TCONS_00018401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018401
Unique NameTCONS_00018401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018401 ID=TCONS_00018401|Name=TCONS_00018401|organism=Clytia hemisphaerica|type=transcript|length=363bp
GGTTTTCTCAGAAACTCAATCTTAAATTGAGTTATGAAACTCAATCTtca
cgaaaaaaaattctgctCTGAAAAAGTTTTGTAATCTTGTGTACATGTTT
ACTCGTTTACTCTTTGCCAGATGATGTAAACTTATTGATAGAGCACGGAA
AGAAGTGGTTAGGGTTCTCCATCTTTGTTAGCTGATGGCAAAGAATCTGT
TCAGCCAGCATTGAATGGGCCAAACTTGATTGTCTAGTAcaagtatttca
aaaaaattgctctggatcgtgttcaaaaataaaggcctgttttgtgacat
tttcaaagttggctgacaattatgttaataaaatgagtatttttggtgGC
TAACCGTTTATTT
Run BLAST on NCBI

transcript from alignment at sc0000297:90607..90969

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018401 ID=TCONS_00018401|Name=TCONS_00018401|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0000297:90607..90969 (Clytia hemisphaerica)
AAATAAACGGTTAGCcaccaaaaatactcattttattaacataattgtca
gccaactttgaaaatgtcacaaaacaggcctttatttttgaacacgatcc
agagcaatttttttgaaatacttgTACTAGACAATCAAGTTTGGCCCATT
CAATGCTGGCTGAACAGATTCTTTGCCATCAGCTAACAAAGATGGAGAAC
CCTAACCACTTCTTTCCGTGCTCTATCAATAAGTTTACATCATCTGGCAA
AGAGTAAACGAGTAAACATGTACACAAGATTACAAAACTTTTTCAGagca
gaattttttttcgtgaAGATTGAGTTTCATAACTCAATTTAAGATTGAGT
TTCTGAGAAAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010318XLOC_010318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018401-exon-sc0000297-1491911889:90607..90969TCONS_00018401-exon-sc0000297-1491911889:90607..90969Clytia hemisphaericaexon
TCONS_00018401-exon-sc0000297-1510915933:90607..90969TCONS_00018401-exon-sc0000297-1510915933:90607..90969Clytia hemisphaericaexon
TCONS_00018401-exon-sc0000297-1575043694:90607..90969TCONS_00018401-exon-sc0000297-1575043694:90607..90969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000297supercontigsc0000297:90607..90969 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78327	0.895058	2.38659	1.17775	1.43517	2.08868	1.03638	1.93192	1.1648	1.3267	1.38112	1.90952	0.720849	1.60336	1.19935	0.335947	0.174631	0.981875	2.05354	0.336838	3.64639	2.78193	1.33979	0	1.23672	1.93175	2.33265	2.40812	1.36206	2.26571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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