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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018418 ID=TCONS_00018418|Name=TCONS_00018418|organism=Clytia hemisphaerica|type=transcript|length=5075bpRun BLAST on NCBI protein sequence of TCONS_00018418-protein >TCONS_00018418-protein ID=TCONS_00018418-protein|Name=TCONS_00018418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1430bp FRFQIFITKKSDYGYIFVNIMARLVEYVAVVGLKRPTVDSTQSPELLRKYRun BLAST on NCBI transcript from alignment at sc0000300:154988..171323+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018418 ID=TCONS_00018418|Name=TCONS_00018418|organism=Clytia hemisphaerica|type=transcript|length=16336bp|location=Sequence derived from alignment at sc0000300:154988..171323+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000300:154988..171323+ >TCONS_00018418 ID=TCONS_00018418|Name=TCONS_00018418|organism=Clytia hemisphaerica|type=CDS|length=103032bp|location=Sequence derived from alignment at sc0000300:154988..171323+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018418 vs. Swiss-Prot (Human)
Match: MADD (MAP kinase-activating death domain protein OS=Homo sapiens GN=MADD PE=1 SV=2) HSP 1 Score: 546.199 bits (1406), Expect = 2.271e-164 Identity = 282/615 (45.85%), Postives = 405/615 (65.85%), Query Frame = 1
Query: 67 RLVEYVAVVGLKRPTVDS-TQSPELLRKYPETDHKDFPLPPDVIFFCQPEGC-ATASKPFSIRQMNSFVFTLTDKETGITRYGICCNFFRPCLGDIPKNKNR--LDKRLXXXXXXXXXXXXXXXXXPDTGVVRRTNSKKRLCRTHSTPVNPERAQKNLH-KNSVLCYSLTSVCIISSYPFFSTFRECLFVFRKLVDSRCAQKNLGPLWSKESFAFFDSNQNIGQSLPLLECRNWSLFCDNSLL--NSQQLKSELLEIDDWIRNFLKIPLPIAGVNRVEVELLPRHIQPPLTFALPEKSRFSFLDFPIHLPLELLGIETCLKILTCIMLEHKVVLQSSDYNALSISVMALTSMLYPLEYMFPIIPLLPTCMKNAEQLLLAPTPYVIGIPSSFFALKTNFEVPTDVLIVDLDTNKMSVPLQMDEIPNLPEPEGTTLRNQLRKCLSHMSLSSPPV---DLYNNKPPAPTSRLQTEHPDDDKSSQS-------LYGNDMDSVDIAVRSALVKFFCSPNILSNFTKHTRVLRLYPRPVVAFLKDVFXXXXXXXXXXXXALVDTQAVEFFAEYMVNPDNTVFRKVQNGILDPRIIGDKPKWYSHYVQPLFFQVHNPHSRLG 1860
RL++Y+ +VG + P+ DS Q+PELLR+YP DH +FPLPPDV+FFCQPEGC + + S+R SFVFTLTDK+TG+TRYGIC NF+R I K K R ++ + +S + + ++G + S + +P RA+ +NS +LTS+C++S YPFFSTFRECL+ ++LVD C+++ LG + +G + W +F + L+ S L +L EI+ WI L+ P+P++G RV++E+LP+ +QP LTFALP+ SRF+ +DFP+HLPLELLG++ CL++LTCI+LEHKVVLQS DYNALS+SVMA +M+YPLEYMFP+IPLLPTCM +AEQLLLAPTPY+IG+P+SFF K +F++P DV +VDLD+N++ P + +P LPEPE L+ L++ L+ MSL++ P+ + ++ P L P +D S +YGND+DSVD+A R A+V+FF S N+L F HTR LRL+PRPVVAF F++SR ++ + L TQAVE+F E+++NP N F+++ N + DP +IGDKPKWY+H +QP+ ++V++ +S+L
Sbjct: 10 RLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHTEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRISKEKGEGGAGSRGKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQSPRGKRRAKAGSRSRNS----TLTSLCVLSHYPFFSTFRECLYTLKRLVDC-CSERLLG--------------KKLGIPRGVQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIP---LLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSNSQLA 602 HSP 2 Score: 300.056 bits (767), Expect = 3.789e-82 Identity = 147/321 (45.79%), Postives = 219/321 (68.22%), Query Frame = 1
Query: 3265 IVRNRSTMWDNLDFWEQSFLDAVAVEREAAGLDLNPSELIARYKALSPXXXXXXXXXXXXXXXXXXHNMIGYMVCMGVTEKNIKFKVRRLLAKAHIGIAQSQRVDKLLSNLTGVTGNDIDLLVPRSKRIKIQNFVVHLGDTQSGLMFFLEVREDCLVLKSTQGNVIERWWYENVVNLSCSPKTKVLCVWIRTGEETDLQKICTKKCKALYDSIKDSMKKAAERLNKEGAGINLVNDYKVVDTISGDQGILKVSLEGVSVVFVERKLCVDVKQLKNCCAKQHTLIVEEYVPHNQSVVKHQFFSEEANEICYAILCLFSYIAA 4227
I + RST+WD + FWE +FLDAV +ERE G+D P E+I RY +L +RK LE+DED LL LLHN+I YM+ M V + +I+ KVRRL+ K+HIG+ SQ+++++L L + G D+ + S+ +K Q FVVH G +G +FF+EV +DC+VL+S G V ERWWYE ++N++ PKTKVLC+W R G ET L K TKKC+ LY +KDSM++AA R G L ++ V D +G+ G+L+V+LEG+++ F+ ++ +++ +K C + ++EE+VP + VV H++ + A+EICY++LCLFSY+AA
Sbjct: 1310 ISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIWSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDLKTGEGGLLQVTLEGINLKFMHNQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAA 1630 HSP 3 Score: 93.9745 bits (232), Expect = 6.712e-19 Identity = 62/176 (35.23%), Postives = 98/176 (55.68%), Query Frame = 1
Query: 2428 QSISAIQKSPLDRTIMEGFESLRGASQSVYNSENQQMITEVVGYVKNGDGIGWLSQKKLRKILNHEQLRQYLIN------QMDIDRRYSANTLLDIHISRGVYRGYMELLKLIIEGYEYSTQWKGLAGLASVFDFLEVTHRYFCGKRYKDDGTMENSEELASPIVGEKAVVNGKGE 2937
Q S I+ SP T+ S +G S + +SENQQ + EVV V +G G+GWL+ KK+R++L EQLR ++++ Q + D R + + D+ ISR VY+G ++LLK + E S GL G+AS+F LE+ ++ K D +E + +P VG+ + G+G+
Sbjct: 913 QKSSVIKHSP---TVKREPPSPQGRSSN--SSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRMVQSEDDAR--QDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKE-PDKRKRSPTESVNTP-VGKDPGLAGRGD 1079 The following BLAST results are available for this feature:
BLAST of TCONS_00018418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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