TCONS_00018420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018420
Unique NameTCONS_00018420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1242

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018420 ID=TCONS_00018420|Name=TCONS_00018420|organism=Clytia hemisphaerica|type=transcript|length=1242bp
CagtaaataacaaaaaatcaaaatcatcagtATGGTTGACATCAATAGTA
AAATCAATTCGTATTATAAACACATGCAAAGACATTTCCAATCACACGGC
CGTACTAAAGATTTTGTTGGACATTCTTCAAAGGTGCATTCTGTGGGTTG
GAGTTGTGGTGGACGCCATCTTGCTTCTTGTTCGTTCGATAAAACTGTCA
GTGTCTACACATTGGAAAAAGAACGTCTAGTGAAAGAATGTACAATGAAA
GGTCACAGTGACAGTGTCGATCAATTATGTTGGCATCCGACCAATCCAAA
TCTGCTGGTGTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGGACGCAA
GGAATAGTAGCAACAGCAAATGTACAGATGTGGTCAGTACCAAGGGTGAA
AATATCAATATATGTTGGAGTCCCAATGGAAATACTATAGCTGTCGGGAA
TAAGGAAGATTTAATAACTTTCATCGACAcaagaacattcaaaataatGA
GAGAAGAACAATTCAAATTTGAAGTGAACGAAATATCTTGGAATAACACC
AACGATCTTTTCTTTCTAACCAACGGTCATGGATGTGTTATTATATTAAA
TTATCCAAATTTGAAGCAAATTCAAACATTGAATGCACACCCTGCAAATT
GTATTTGTATCAAGTTCGATCCAAAGGGAAAATATTTTGCAACTGGAAGT
GCTGACGCTTTGGTTAGCCTGTGGGATTTAGACGAATTATGTTGTGTTCG
CTGTTTTTCAAGGCTAGATTGGCCAGTGCGAACGATCAGTTTCAGCCACG
ACGGACAAATGCTTGCGTCAGCATCCGAAGACCTCCTTATCGACATCGCC
ATGGTTGAAACTGGTGAGAAGATAGCTGAGGTACCATGCTCAACTCCTAC
ATTCACTGTAGCGTGGCATCCGAAAGAACCAATACTCGCTTTTGCCTGTG
ATGACAAGGACAAGCATGATCGAGATGCTGGTACTATCAAACTGTTTGGT
CTTCAAAGCTCATCTTGATGAAATATCAACGTATAGAATGGAATTGATCG
AGACAAGAGGCCAGTTTGCACTGGAAATCTTTCTTAAAGGATTTATGCGA
GTCTTCATTTGTGAGTGACACGTGGTTAGGTACAGTCGGTGATACCATGG
TAACAACAGTTTGTGACACAAACATTTTATAgggtttttaatgttttgta
aatttttatgtcaagaaaaggaaaaaagataacatCCTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00018420-protein

>TCONS_00018420-protein ID=TCONS_00018420-protein|Name=TCONS_00018420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MVDINSKINSYYKHMQRHFQSHGRTKDFVGHSSKVHSVGWSCGGRHLASC
SFDKTVSVYTLEKERLVKECTMKGHSDSVDQLCWHPTNPNLLVSASGDKT
IRVWDARNSSNSKCTDVVSTKGENINICWSPNGNTIAVGNKEDLITFIDT
RTFKIMREEQFKFEVNEISWNNTNDLFFLTNGHGCVIILNYPNLKQIQTL
NAHPANCICIKFDPKGKYFATGSADALVSLWDLDELCCVRCFSRLDWPVR
TISFSHDGQMLASASEDLLIDIAMVETGEKIAEVPCSTPTFTVAWHPKEP
ILAFACDDKDKHDRDAGTIKLFGLQSSS
Run BLAST on NCBI

transcript from alignment at sc0000300:177015..181214+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018420 ID=TCONS_00018420|Name=TCONS_00018420|organism=Clytia hemisphaerica|type=transcript|length=4200bp|location=Sequence derived from alignment at sc0000300:177015..181214+ (Clytia hemisphaerica)
CagtaaataacaaaaaatcaaaatcatcagtATGGTTGACATCAATAGTA
AAATCAATTCGTATTATAAACACATGCAAAGACATTTCCAATCACACGGC
CGTACTAAAGATTTTGTTGGACATTCTTCAAAGGTAATGGTTGTTTCAGT
TCTtattttcgttcgttcgttcgtttgtccgttcgtccgttcgtccgttc
gtccgtccgtccgtccgtccgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttgcTTCTCTCTTTTacga
aaaattacttttttttccAGGTGCATTCTGTGGGTTGGAGTTGTGGTGGA
CGCCATCTTGCTTCTTGTTCGTTCGATAAAACTGTCAGTGTCTACACATT
GGAAAAAGAACGTCTAGTAAGTACATCAATAATACAATGTAGGTAAGTAT
TTCAGGGTTAATTAAATTcgtgaaaatcattttttggcACAAAATGTATT
TCTATATGGATATCAGTTACAGCTTTGCGCTTTCAATTCTTTCTATCCTT
CTATTACAATGGCGAGGAATTTATGAAGAAGACTTTTTTTGGCAAGGTTC
CATTTTGAAGTTGTTGAAGTTAAATGTATTATTTTTGGATAGTGTTTACG
CGTAAGTAAAATAGATAGTGTCGACATTTTACACCGGTATTCCTGTAATC
TAGGACTTTAAGACagtttttcgattgttttcataGGGTCTACGGCCAGC
CAGCTCGACTATCTAAAAACTGAACGGAGCAtaggaaggagcggggattc
gaatcGCGATACCCTGGTTTGTATGATTTTAACTACTTTGCCATCGCTCC
AATCTTTCTTTTATTAACAGGTGAAAGAATGTACAATGAAAGGTCACAGT
GACAGTGTCGATCAATTATGTTGGCATCCGACCAATCCAAATCTGCTGGT
GTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGGACGCAAGGAGTGAGT
CTTCAAATACACCCTTTATATAAAAACATGACGCTCGAATTTTGGTCAAA
ACCTAGGAACAAATTAAGATGATGCTAGCCTCAGACTtatgaaaaataat
gatttgAATCCCGTTCTAGCCAATAAGTGGATAAGGtactttaggtgtac
aaactttcgcgattttcgcgaattttggcccttttcgcggaagtaaatgt
ctttaaaaattctaggaagggccattcgcgaaagtttatgctcgtgaaaa
atgattgacaaaatctgtaaaacttcaaactttgaataaaatgtaacttt
tatggcactttttagcctgctaaaagactaattagtcaaaggacaaatgt
ttccagccaatccaagaagtatttgtccctctaagccattttttcatgtg
aaaattctcaattttacggcTTGATTCGCGAaggtttatgctcgcgaaaa
atattttccgttaaattcgcgaaagtaaatgccgtaaatttcgcgatttt
tcgtcctcgcgaaaatttctgctggcgaaagtttgtacacctaaagtaAA
CTATAAACATAACATACATAAACAACTTGTTTTTAGATAGTAGCAACAGC
AAATGTACAGATGTGGTCAGTACCAAGGGTGAAAATATCAATATATGTTG
GAGTCCCAATGGAAATACTATAGCTGTCGGGAATAAGGTATCCTCATTTT
TATCAGCTAAATTCTTTCAGGCTGAATTCTTTTAGAACTCCGACTACCAT
TTTTGGAGAACGTTTATCTTCTATTAAGCTGTGCTAAACAATGCTACATT
CAAGATTGAACCAAAAGCAATCGTTTCTTTTTTCATAGGAAGATTTAATA
ACTTTCATCGACAcaagaacattcaaaataatGAGAGAAGAACAATTCAA
ATTTGAAGTAAGTTTTTGCTAATTATCGAATGGTATTATTTGTTATTGGG
GTACACTTGGCGTAATTTCGAACGAAGGGTGGATTTCTTTGAATATCGGC
GTTCGGAAGCTGCTTATGATTCAAAAGAAGAACGCTGATTTCAATGTTGT
TTTTCTCTAAGTATTCATCGCATGTCACTGTAATTCTTTCACGTTTAGGT
GAACGAAATATCTTGGAATAACACCAACGATCTTTTCTTTCTAACCAACG
GTCATGGATGTGTTATTATATTAAAGTAAGACCTTTTCCTGAGTGTTTTC
TTAGAAACGAATGACATAGAAAGGACATGTGTTGAAAAAACTCGATGATA
ATATCTACAAATTGATTCTATATGGTAAACGATTTCGGAAATATTTCTTA
CATCAATTCTACCGTGTGAGCCGAAAAAACAATTGGCCTAACAAATTGTC
CTATAAAATCCTTGGGCTTCTATTATTTAATAAGTAGATCCATCGTTCCT
TCTCTCTCTCATTTCAGTTATCCAAATTTGAAGCAAATTCAAACATTGAA
TGCACACCCTGCAAATTGTATTTGTATCAAGTTCGATCCAAAGGGAAAGT
AAGTACTCCTAGATTTAAATTTCCCATAAAGAATTACTTGACACATGCTT
ATAATGCAcatgttttaatgtttttggtttCTCATAACAAGTGTCTGGTG
CGTGTACTTATATTTTCAAACCGACTTATTAGCATTTATTTAAACCCTAA
CACTGCCTTGgttcctttttcttttctattcagATATTTTGCAACTGGAA
GTGCTGACGCTTTGGTTAGCCTGTGGGATTTAGACGAATTATGTTGTGTT
CGCTGTTTTTCAAGGCTAGAGTAAGtgatttttttgctttattttctgGA
ATGATGATAGCAAATTcatctttttaagaaaattaaaagacattttttat
tattttgagaaTTTCGTGGTTCGACCTGTATTCTGTGTTCAAGGAAAATA
CCACTTGCGGGATTTAAGGGGGTTCTCCCTTTGGTGTTAACTTTGCTGTA
TATCTAGCTGCATTTATTTACCATGACaattcaatttcttcttttcagTT
GGCCAGTGCGAACGATCAGTTTCAGCCACGACGGACAAATGCTTGCGTCA
GCATCCGAAGACCTCCTTATCGACATCGTACGTCtttcttgttttgaatt
tttcgtgCACTTTTAGTTGAATTATCCTCCATACGTGTCACTGTAATTCT
TCTAAATTCATGTCACCAAATCTCCATTTTGAGCTGCTTTGAGATGTAAC
TGAAAATTCTCTATTGATATTTCGTATATTGACGGATAGAAAACTTAAAA
CGTAAAAACAGCAAATTGATCagaaaaatgaagcgactgTTTATGTAGAA
ATTTTCCTCGTCCTCAACATTGACGGGTAAAAAGGCACATCAGCATAGCA
AGTCGCGTGCTACTTCCCGACAATCATCAAACAACAGTTTTGTGAATTCA
CAATTGTGAATAACCAAAAGAATATGCTTAACCCAGTGGCACTTTTCTTT
TTAGGCCATGGTTGAAACTGGTGAGAAGATAGCTGAGGTACCATGCTCAA
CTCCTACATTCACTGTAGCGTGGCATCCGAAAGAACCAATACTCGCTTTT
GCCTGTGATGACAAGGTAAAATAAACTTTAATCAAACTTACATATCGCTT
CCCCTCCCTTCGTGCCTACAAATTAGGTACACTTCAAATTAGCGGACGTT
TTTCTTATTTACAAAGGATATCTACTTCTAATTGGAGTCGGGCTTGTATT
GCGTTTGGTTCTAACATATATAGTCTAGcaagacgactaattcagacaaa
gtagaaataaaacaaaGAGTAATgaagggaacaaattttagttagtttat
acaaactgaatcccgtaacaataatcgtattatcatataacgcctatact
actgtattacacgcattataaacaaCTCCAGTCTAATCTAACATGTTTCT
GACTCTTTTCTCACAGGACAAGCATGATCGAGATGCTGGTACTATCAAAC
TGTTTGGTCTTCAAAGCTCATCTTGATGAAATATCAACGTATAGAATGGA
ATTGATCGAGACAAGAGGCCAGTTTGCACTGGAAATCTTTCTTAAAGGAT
TTATGCGAGTCTTCATTTGTGAGTGACACGTGGTTAGGTACAGTCGGTGA
TACCATGGTAACAACAGTTTGTGACACAAACATTTTATAgggtttttaat
gttttgtaaatttttatgtcaagaaaaggaaaaaagataacatCCTCAAT

Coding sequence (CDS) from alignment at sc0000300:177015..181214+

>TCONS_00018420 ID=TCONS_00018420|Name=TCONS_00018420|organism=Clytia hemisphaerica|type=CDS|length=10857bp|location=Sequence derived from alignment at sc0000300:177015..181214+ (Clytia hemisphaerica)
ATGGTTGACATCAATAGTAAAATCAATTCGTATTATAAACACATGCAAAG
ACATTTCCAATCACACGGCCGTACTAAAGATTTTGTTGGACATTCTTCAA
AGGTGCATTCTGTGGGTTGGAGTTGTGGTGGACGCCATCTTGCTTCTTGT
TCGTTCGATAAAACTGTCAGTGTCTACACATTGGAAAAAGAACGTCTAGT
GAAAGAATGTACAATGAAAGGTCACAGTGACAGTGTCGATCAATTATGTT
GGCATCCGACCAATCCAAATCTGCTGGTGTCTGCTTCAGGCGATAAAACC
ATAAGAGTGTGGGACGCAAGGAATAGTAGCAACAGCAAATGTACAGATGT
GGTCAGTACCAAGGGTGAAAATATCAATATATGTTGGAGTCCCAATGGAA
ATACTATAGCTGTCGGGAATAAGGAAGATTTAATAACTTTCATCGACAca
agaacattcaaaataatGAGAGAAGAACAATTCAAATTTGAAGTGAACGA
AATATCTTGGAATAACACCAACGATCTTTTCTTTCTAACCAACGGTCATG
GATGTGTTATTATATTAAATTATCCAAATTTGAAGCAAATTCAAACATTG
AATGCACACCCTGCAAATTGTATTTGTATCAAGTTCGATCCAAAGGGAAA
ATATTTTGCAACTGGAAGTGCTGACGCTTTGGTTAGCCTGTGGGATTTAG
ACGAATTATGTTGTGTTCGCTGTTTTTCAAGGCTAGATTGGCCAGTGCGA
ACGATCAGTTTCAGCCACGACGGACAAATGCTTGCGTCAGCATCCGAAGA
CCTCCTTATCGACATCGCCATGGTTGAAACTGGTGAGAAGATAGCTGAGG
TACCATGCTCAACTCCTACATTCACTGTAGCGTGGCATCCGAAAGAACCA
ATACTCGCTTTTGCCTGTGATGACAAGGACAAGCATGATCGAGATGCTGG
TACTATCAAACTGTTTGGTCTTCAAAGCTCATCTTGAATGGTTGACATCA
ATAGTAAAATCAATTCGTATTATAAACACATGCAAAGACATTTCCAATCA
CACGGCCGTACTAAAGATTTTGTTGGACATTCTTCAAAGGTGCATTCTGT
GGGTTGGAGTTGTGGTGGACGCCATCTTGCTTCTTGTTCGTTCGATAAAA
CTGTCAGTGTCTACACATTGGAAAAAGAACGTCTAGTGAAAGAATGTACA
ATGAAAGGTCACAGTGACAGTGTCGATCAATTATGTTGGCATCCGACCAA
TCCAAATCTGCTGGTGTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGG
ACGCAAGGAATAGTAGCAACAGCAAATGTACAGATGTGGTCAGTACCAAG
GGTGAAAATATCAATATATGTTGGAGTCCCAATGGAAATACTATAGCTGT
CGGGAATAAGGAAGATTTAATAACTTTCATCGACAcaagaacattcaaaa
taatGAGAGAAGAACAATTCAAATTTGAAGTGAACGAAATATCTTGGAAT
AACACCAACGATCTTTTCTTTCTAACCAACGGTCATGGATGTGTTATTAT
ATTAAATTATCCAAATTTGAAGCAAATTCAAACATTGAATGCACACCCTG
CAAATTGTATTTGTATCAAGTTCGATCCAAAGGGAAAATATTTTGCAACT
GGAAGTGCTGACGCTTTGGTTAGCCTGTGGGATTTAGACGAATTATGTTG
TGTTCGCTGTTTTTCAAGGCTAGATTGGCCAGTGCGAACGATCAGTTTCA
GCCACGACGGACAAATGCTTGCGTCAGCATCCGAAGACCTCCTTATCGAC
ATCGCCATGGTTGAAACTGGTGAGAAGATAGCTGAGGTACCATGCTCAAC
TCCTACATTCACTGTAGCGTGGCATCCGAAAGAACCAATACTCGCTTTTG
CCTGTGATGACAAGGACAAGCATGATCGAGATGCTGGTACTATCAAACTG
TTTGGTCTTCAAAGCTCATCTTGAATGGTTGACATCAATAGTAAAATCAA
TTCGTATTATAAACACATGCAAAGACATTTCCAATCACACGGCCGTACTA
AAGATTTTGTTGGACATTCTTCAAAGGTGCATTCTGTGGGTTGGAGTTGT
GGTGGACGCCATCTTGCTTCTTGTTCGTTCGATAAAACTGTCAGTGTCTA
CACATTGGAAAAAGAACGTCTAGTGAAAGAATGTACAATGAAAGGTCACA
GTGACAGTGTCGATCAATTATGTTGGCATCCGACCAATCCAAATCTGCTG
GTGTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGGACGCAAGGAATAG
TAGCAACAGCAAATGTACAGATGTGGTCAGTACCAAGGGTGAAAATATCA
ATATATGTTGGAGTCCCAATGGAAATACTATAGCTGTCGGGAATAAGGAA
GATTTAATAACTTTCATCGACAcaagaacattcaaaataatGAGAGAAGA
ACAATTCAAATTTGAAGTGAACGAAATATCTTGGAATAACACCAACGATC
TTTTCTTTCTAACCAACGGTCATGGATGTGTTATTATATTAAATTATCCA
AATTTGAAGCAAATTCAAACATTGAATGCACACCCTGCAAATTGTATTTG
TATCAAGTTCGATCCAAAGGGAAAATATTTTGCAACTGGAAGTGCTGACG
CTTTGGTTAGCCTGTGGGATTTAGACGAATTATGTTGTGTTCGCTGTTTT
TCAAGGCTAGATTGGCCAGTGCGAACGATCAGTTTCAGCCACGACGGACA
AATGCTTGCGTCAGCATCCGAAGACCTCCTTATCGACATCGCCATGGTTG
AAACTGGTGAGAAGATAGCTGAGGTACCATGCTCAACTCCTACATTCACT
GTAGCGTGGCATCCGAAAGAACCAATACTCGCTTTTGCCTGTGATGACAA
GGACAAGCATGATCGAGATGCTGGTACTATCAAACTGTTTGGTCTTCAAA
GCTCATCTTGAATGGTTGACATCAATAGTAAAATCAATTCGTATTATAAA
CACATGCAAAGACATTTCCAATCACACGGCCGTACTAAAGATTTTGTTGG
ACATTCTTCAAAGGTGCATTCTGTGGGTTGGAGTTGTGGTGGACGCCATC
TTGCTTCTTGTTCGTTCGATAAAACTGTCAGTGTCTACACATTGGAAAAA
GAACGTCTAGTGAAAGAATGTACAATGAAAGGTCACAGTGACAGTGTCGA
TCAATTATGTTGGCATCCGACCAATCCAAATCTGCTGGTGTCTGCTTCAG
GCGATAAAACCATAAGAGTGTGGGACGCAAGGAATAGTAGCAACAGCAAA
TGTACAGATGTGGTCAGTACCAAGGGTGAAAATATCAATATATGTTGGAG
TCCCAATGGAAATACTATAGCTGTCGGGAATAAGGAAGATTTAATAACTT
TCATCGACAcaagaacattcaaaataatGAGAGAAGAACAATTCAAATTT
GAAGTGAACGAAATATCTTGGAATAACACCAACGATCTTTTCTTTCTAAC
CAACGGTCATGGATGTGTTATTATATTAAATTATCCAAATTTGAAGCAAA
TTCAAACATTGAATGCACACCCTGCAAATTGTATTTGTATCAAGTTCGAT
CCAAAGGGAAAATATTTTGCAACTGGAAGTGCTGACGCTTTGGTTAGCCT
GTGGGATTTAGACGAATTATGTTGTGTTCGCTGTTTTTCAAGGCTAGATT
GGCCAGTGCGAACGATCAGTTTCAGCCACGACGGACAAATGCTTGCGTCA
GCATCCGAAGACCTCCTTATCGACATCGCCATGGTTGAAACTGGTGAGAA
GATAGCTGAGGTACCATGCTCAACTCCTACATTCACTGTAGCGTGGCATC
CGAAAGAACCAATACTCGCTTTTGCCTGTGATGACAAGGACAAGCATGAT
CGAGATGCTGGTACTATCAAACTGTTTGGTCTTCAAAGCTCATCTTGAAT
GGTTGACATCAATAGTAAAATCAATTCGTATTATAAACACATGCAAAGAC
ATTTCCAATCACACGGCCGTACTAAAGATTTTGTTGGACATTCTTCAAAG
GTGCATTCTGTGGGTTGGAGTTGTGGTGGACGCCATCTTGCTTCTTGTTC
GTTCGATAAAACTGTCAGTGTCTACACATTGGAAAAAGAACGTCTAGTGA
AAGAATGTACAATGAAAGGTCACAGTGACAGTGTCGATCAATTATGTTGG
CATCCGACCAATCCAAATCTGCTGGTGTCTGCTTCAGGCGATAAAACCAT
AAGAGTGTGGGACGCAAGGAATAGTAGCAACAGCAAATGTACAGATGTGG
TCAGTACCAAGGGTGAAAATATCAATATATGTTGGAGTCCCAATGGAAAT
ACTATAGCTGTCGGGAATAAGGAAGATTTAATAACTTTCATCGACAcaag
aacattcaaaataatGAGAGAAGAACAATTCAAATTTGAAGTGAACGAAA
TATCTTGGAATAACACCAACGATCTTTTCTTTCTAACCAACGGTCATGGA
TGTGTTATTATATTAAATTATCCAAATTTGAAGCAAATTCAAACATTGAA
TGCACACCCTGCAAATTGTATTTGTATCAAGTTCGATCCAAAGGGAAAAT
ATTTTGCAACTGGAAGTGCTGACGCTTTGGTTAGCCTGTGGGATTTAGAC
GAATTATGTTGTGTTCGCTGTTTTTCAAGGCTAGATTGGCCAGTGCGAAC
GATCAGTTTCAGCCACGACGGACAAATGCTTGCGTCAGCATCCGAAGACC
TCCTTATCGACATCGCCATGGTTGAAACTGGTGAGAAGATAGCTGAGGTA
CCATGCTCAACTCCTACATTCACTGTAGCGTGGCATCCGAAAGAACCAAT
ACTCGCTTTTGCCTGTGATGACAAGGACAAGCATGATCGAGATGCTGGTA
CTATCAAACTGTTTGGTCTTCAAAGCTCATCTTGAATGGTTGACATCAAT
AGTAAAATCAATTCGTATTATAAACACATGCAAAGACATTTCCAATCACA
CGGCCGTACTAAAGATTTTGTTGGACATTCTTCAAAGGTGCATTCTGTGG
GTTGGAGTTGTGGTGGACGCCATCTTGCTTCTTGTTCGTTCGATAAAACT
GTCAGTGTCTACACATTGGAAAAAGAACGTCTAGTGAAAGAATGTACAAT
GAAAGGTCACAGTGACAGTGTCGATCAATTATGTTGGCATCCGACCAATC
CAAATCTGCTGGTGTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGGAC
GCAAGGAATAGTAGCAACAGCAAATGTACAGATGTGGTCAGTACCAAGGG
TGAAAATATCAATATATGTTGGAGTCCCAATGGAAATACTATAGCTGTCG
GGAATAAGGAAGATTTAATAACTTTCATCGACAcaagaacattcaaaata
atGAGAGAAGAACAATTCAAATTTGAAGTGAACGAAATATCTTGGAATAA
CACCAACGATCTTTTCTTTCTAACCAACGGTCATGGATGTGTTATTATAT
TAAATTATCCAAATTTGAAGCAAATTCAAACATTGAATGCACACCCTGCA
AATTGTATTTGTATCAAGTTCGATCCAAAGGGAAAATATTTTGCAACTGG
AAGTGCTGACGCTTTGGTTAGCCTGTGGGATTTAGACGAATTATGTTGTG
TTCGCTGTTTTTCAAGGCTAGATTGGCCAGTGCGAACGATCAGTTTCAGC
CACGACGGACAAATGCTTGCGTCAGCATCCGAAGACCTCCTTATCGACAT
CGCCATGGTTGAAACTGGTGAGAAGATAGCTGAGGTACCATGCTCAACTC
CTACATTCACTGTAGCGTGGCATCCGAAAGAACCAATACTCGCTTTTGCC
TGTGATGACAAGGACAAGCATGATCGAGATGCTGGTACTATCAAACTGTT
TGGTCTTCAAAGCTCATCTTGAATGGTTGACATCAATAGTAAAATCAATT
CGTATTATAAACACATGCAAAGACATTTCCAATCACACGGCCGTACTAAA
GATTTTGTTGGACATTCTTCAAAGGTGCATTCTGTGGGTTGGAGTTGTGG
TGGACGCCATCTTGCTTCTTGTTCGTTCGATAAAACTGTCAGTGTCTACA
CATTGGAAAAAGAACGTCTAGTGAAAGAATGTACAATGAAAGGTCACAGT
GACAGTGTCGATCAATTATGTTGGCATCCGACCAATCCAAATCTGCTGGT
GTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGGACGCAAGGAATAGTA
GCAACAGCAAATGTACAGATGTGGTCAGTACCAAGGGTGAAAATATCAAT
ATATGTTGGAGTCCCAATGGAAATACTATAGCTGTCGGGAATAAGGAAGA
TTTAATAACTTTCATCGACAcaagaacattcaaaataatGAGAGAAGAAC
AATTCAAATTTGAAGTGAACGAAATATCTTGGAATAACACCAACGATCTT
TTCTTTCTAACCAACGGTCATGGATGTGTTATTATATTAAATTATCCAAA
TTTGAAGCAAATTCAAACATTGAATGCACACCCTGCAAATTGTATTTGTA
TCAAGTTCGATCCAAAGGGAAAATATTTTGCAACTGGAAGTGCTGACGCT
TTGGTTAGCCTGTGGGATTTAGACGAATTATGTTGTGTTCGCTGTTTTTC
AAGGCTAGATTGGCCAGTGCGAACGATCAGTTTCAGCCACGACGGACAAA
TGCTTGCGTCAGCATCCGAAGACCTCCTTATCGACATCGCCATGGTTGAA
ACTGGTGAGAAGATAGCTGAGGTACCATGCTCAACTCCTACATTCACTGT
AGCGTGGCATCCGAAAGAACCAATACTCGCTTTTGCCTGTGATGACAAGG
ACAAGCATGATCGAGATGCTGGTACTATCAAACTGTTTGGTCTTCAAAGC
TCATCTTGAATGGTTGACATCAATAGTAAAATCAATTCGTATTATAAACA
CATGCAAAGACATTTCCAATCACACGGCCGTACTAAAGATTTTGTTGGAC
ATTCTTCAAAGGTGCATTCTGTGGGTTGGAGTTGTGGTGGACGCCATCTT
GCTTCTTGTTCGTTCGATAAAACTGTCAGTGTCTACACATTGGAAAAAGA
ACGTCTAGTGAAAGAATGTACAATGAAAGGTCACAGTGACAGTGTCGATC
AATTATGTTGGCATCCGACCAATCCAAATCTGCTGGTGTCTGCTTCAGGC
GATAAAACCATAAGAGTGTGGGACGCAAGGAATAGTAGCAACAGCAAATG
TACAGATGTGGTCAGTACCAAGGGTGAAAATATCAATATATGTTGGAGTC
CCAATGGAAATACTATAGCTGTCGGGAATAAGGAAGATTTAATAACTTTC
ATCGACAcaagaacattcaaaataatGAGAGAAGAACAATTCAAATTTGA
AGTGAACGAAATATCTTGGAATAACACCAACGATCTTTTCTTTCTAACCA
ACGGTCATGGATGTGTTATTATATTAAATTATCCAAATTTGAAGCAAATT
CAAACATTGAATGCACACCCTGCAAATTGTATTTGTATCAAGTTCGATCC
AAAGGGAAAATATTTTGCAACTGGAAGTGCTGACGCTTTGGTTAGCCTGT
GGGATTTAGACGAATTATGTTGTGTTCGCTGTTTTTCAAGGCTAGATTGG
CCAGTGCGAACGATCAGTTTCAGCCACGACGGACAAATGCTTGCGTCAGC
ATCCGAAGACCTCCTTATCGACATCGCCATGGTTGAAACTGGTGAGAAGA
TAGCTGAGGTACCATGCTCAACTCCTACATTCACTGTAGCGTGGCATCCG
AAAGAACCAATACTCGCTTTTGCCTGTGATGACAAGGACAAGCATGATCG
AGATGCTGGTACTATCAAACTGTTTGGTCTTCAAAGCTCATCTTGAATGG
TTGACATCAATAGTAAAATCAATTCGTATTATAAACACATGCAAAGACAT
TTCCAATCACACGGCCGTACTAAAGATTTTGTTGGACATTCTTCAAAGGT
GCATTCTGTGGGTTGGAGTTGTGGTGGACGCCATCTTGCTTCTTGTTCGT
TCGATAAAACTGTCAGTGTCTACACATTGGAAAAAGAACGTCTAGTGAAA
GAATGTACAATGAAAGGTCACAGTGACAGTGTCGATCAATTATGTTGGCA
TCCGACCAATCCAAATCTGCTGGTGTCTGCTTCAGGCGATAAAACCATAA
GAGTGTGGGACGCAAGGAATAGTAGCAACAGCAAATGTACAGATGTGGTC
AGTACCAAGGGTGAAAATATCAATATATGTTGGAGTCCCAATGGAAATAC
TATAGCTGTCGGGAATAAGGAAGATTTAATAACTTTCATCGACAcaagaa
cattcaaaataatGAGAGAAGAACAATTCAAATTTGAAGTGAACGAAATA
TCTTGGAATAACACCAACGATCTTTTCTTTCTAACCAACGGTCATGGATG
TGTTATTATATTAAATTATCCAAATTTGAAGCAAATTCAAACATTGAATG
CACACCCTGCAAATTGTATTTGTATCAAGTTCGATCCAAAGGGAAAATAT
TTTGCAACTGGAAGTGCTGACGCTTTGGTTAGCCTGTGGGATTTAGACGA
ATTATGTTGTGTTCGCTGTTTTTCAAGGCTAGATTGGCCAGTGCGAACGA
TCAGTTTCAGCCACGACGGACAAATGCTTGCGTCAGCATCCGAAGACCTC
CTTATCGACATCGCCATGGTTGAAACTGGTGAGAAGATAGCTGAGGTACC
ATGCTCAACTCCTACATTCACTGTAGCGTGGCATCCGAAAGAACCAATAC
TCGCTTTTGCCTGTGATGACAAGGACAAGCATGATCGAGATGCTGGTACT
ATCAAACTGTTTGGTCTTCAAAGCTCATCTTGAATGGTTGACATCAATAG
TAAAATCAATTCGTATTATAAACACATGCAAAGACATTTCCAATCACACG
GCCGTACTAAAGATTTTGTTGGACATTCTTCAAAGGTGCATTCTGTGGGT
TGGAGTTGTGGTGGACGCCATCTTGCTTCTTGTTCGTTCGATAAAACTGT
CAGTGTCTACACATTGGAAAAAGAACGTCTAGTGAAAGAATGTACAATGA
AAGGTCACAGTGACAGTGTCGATCAATTATGTTGGCATCCGACCAATCCA
AATCTGCTGGTGTCTGCTTCAGGCGATAAAACCATAAGAGTGTGGGACGC
AAGGAATAGTAGCAACAGCAAATGTACAGATGTGGTCAGTACCAAGGGTG
AAAATATCAATATATGTTGGAGTCCCAATGGAAATACTATAGCTGTCGGG
AATAAGGAAGATTTAATAACTTTCATCGACAcaagaacattcaaaataat
GAGAGAAGAACAATTCAAATTTGAAGTGAACGAAATATCTTGGAATAACA
CCAACGATCTTTTCTTTCTAACCAACGGTCATGGATGTGTTATTATATTA
AATTATCCAAATTTGAAGCAAATTCAAACATTGAATGCACACCCTGCAAA
TTGTATTTGTATCAAGTTCGATCCAAAGGGAAAATATTTTGCAACTGGAA
GTGCTGACGCTTTGGTTAGCCTGTGGGATTTAGACGAATTATGTTGTGTT
CGCTGTTTTTCAAGGCTAGATTGGCCAGTGCGAACGATCAGTTTCAGCCA
CGACGGACAAATGCTTGCGTCAGCATCCGAAGACCTCCTTATCGACATCG
CCATGGTTGAAACTGGTGAGAAGATAGCTGAGGTACCATGCTCAACTCCT
ACATTCACTGTAGCGTGGCATCCGAAAGAACCAATACTCGCTTTTGCCTG
TGATGACAAGGACAAGCATGATCGAGATGCTGGTACTATCAAACTGTTTG
GTCTTCAAAGCTCATCTTGAATGGTTGACATCAATAGTAAAATCAATTCG
TATTATAAACACATGCAAAGACATTTCCAATCACACGGCCGTACTAAAGA
TTTTGTTGGACATTCTTCAAAGGTGCATTCTGTGGGTTGGAGTTGTGGTG
GACGCCATCTTGCTTCTTGTTCGTTCGATAAAACTGTCAGTGTCTACACA
TTGGAAAAAGAACGTCTAGTGAAAGAATGTACAATGAAAGGTCACAGTGA
CAGTGTCGATCAATTATGTTGGCATCCGACCAATCCAAATCTGCTGGTGT
CTGCTTCAGGCGATAAAACCATAAGAGTGTGGGACGCAAGGAATAGTAGC
AACAGCAAATGTACAGATGTGGTCAGTACCAAGGGTGAAAATATCAATAT
ATGTTGGAGTCCCAATGGAAATACTATAGCTGTCGGGAATAAGGAAGATT
TAATAACTTTCATCGACAcaagaacattcaaaataatGAGAGAAGAACAA
TTCAAATTTGAAGTGAACGAAATATCTTGGAATAACACCAACGATCTTTT
CTTTCTAACCAACGGTCATGGATGTGTTATTATATTAAATTATCCAAATT
TGAAGCAAATTCAAACATTGAATGCACACCCTGCAAATTGTATTTGTATC
AAGTTCGATCCAAAGGGAAAATATTTTGCAACTGGAAGTGCTGACGCTTT
GGTTAGCCTGTGGGATTTAGACGAATTATGTTGTGTTCGCTGTTTTTCAA
GGCTAGATTGGCCAGTGCGAACGATCAGTTTCAGCCACGACGGACAAATG
CTTGCGTCAGCATCCGAAGACCTCCTTATCGACATCGCCATGGTTGAAAC
TGGTGAGAAGATAGCTGAGGTACCATGCTCAACTCCTACATTCACTGTAG
CGTGGCATCCGAAAGAACCAATACTCGCTTTTGCCTGTGATGACAAGGAC
AAGCATGATCGAGATGCTGGTACTATCAAACTGTTTGGTCTTCAAAGCTC
ATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010334XLOC_010334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018420-proteinTCONS_00018420-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018420-exon-sc0000300-1491911889:177015..177147TCONS_00018420-exon-sc0000300-1491911889:177015..177147Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:177015..177147TCONS_00018420-exon-sc0000300-1510915933:177015..177147Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:177015..177147TCONS_00018420-exon-sc0000300-1575043694:177015..177147Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:177335..177430TCONS_00018420-exon-sc0000300-1491911889:177335..177430Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:177335..177430TCONS_00018420-exon-sc0000300-1510915933:177335..177430Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:177335..177430TCONS_00018420-exon-sc0000300-1575043694:177335..177430Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:177885..178008TCONS_00018420-exon-sc0000300-1491911889:177885..178008Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:177885..178008TCONS_00018420-exon-sc0000300-1510915933:177885..178008Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:177885..178008TCONS_00018420-exon-sc0000300-1575043694:177885..178008Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:178601..178701TCONS_00018420-exon-sc0000300-1491911889:178601..178701Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:178601..178701TCONS_00018420-exon-sc0000300-1510915933:178601..178701Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:178601..178701TCONS_00018420-exon-sc0000300-1575043694:178601..178701Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:178853..178921TCONS_00018420-exon-sc0000300-1491911889:178853..178921Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:178853..178921TCONS_00018420-exon-sc0000300-1510915933:178853..178921Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:178853..178921TCONS_00018420-exon-sc0000300-1575043694:178853..178921Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:179113..179189TCONS_00018420-exon-sc0000300-1491911889:179113..179189Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:179113..179189TCONS_00018420-exon-sc0000300-1510915933:179113..179189Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:179113..179189TCONS_00018420-exon-sc0000300-1575043694:179113..179189Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:179432..179512TCONS_00018420-exon-sc0000300-1491911889:179432..179512Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:179432..179512TCONS_00018420-exon-sc0000300-1510915933:179432..179512Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:179432..179512TCONS_00018420-exon-sc0000300-1575043694:179432..179512Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:179698..179784TCONS_00018420-exon-sc0000300-1491911889:179698..179784Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:179698..179784TCONS_00018420-exon-sc0000300-1510915933:179698..179784Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:179698..179784TCONS_00018420-exon-sc0000300-1575043694:179698..179784Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:180013..180091TCONS_00018420-exon-sc0000300-1491911889:180013..180091Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:180013..180091TCONS_00018420-exon-sc0000300-1510915933:180013..180091Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:180013..180091TCONS_00018420-exon-sc0000300-1575043694:180013..180091Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:180469..180579TCONS_00018420-exon-sc0000300-1491911889:180469..180579Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:180469..180579TCONS_00018420-exon-sc0000300-1510915933:180469..180579Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:180469..180579TCONS_00018420-exon-sc0000300-1575043694:180469..180579Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1491911889:180931..181214TCONS_00018420-exon-sc0000300-1491911889:180931..181214Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1510915933:180931..181214TCONS_00018420-exon-sc0000300-1510915933:180931..181214Clytia hemisphaericaexon
TCONS_00018420-exon-sc0000300-1575043694:180931..181214TCONS_00018420-exon-sc0000300-1575043694:180931..181214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:177015..181214 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.976	82.2543	121.559	129.008	33.2544	25.4729	28.6125	32.8633	36.5819	28.8581	29.6805	30.6043	25.9021	29.5326	32.6071	37.8387	34.8833	38.7668	13.9829	12.2252	24.9378	24.3923	45.8367	39.7031	21.9769	36.4634	19.261	16.887	26.2263	29.8274
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR013979TIF_beta_prop-like
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00018420 vs. Swiss-Prot (Human)
Match: THOC3 (THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1)

HSP 1 Score: 487.263 bits (1253), Expect = 3.587e-171
Identity = 230/328 (70.12%), Postives = 274/328 (83.54%), Query Frame = 2 
Query:   41 INSKINSYYKHMQRHFQSHGRTKDFVGHSSKVHSVGWSCGGRHLASCSFDKTVSVYTLEKERLVKECTMKGHSDSVDQLCWHPTNPNLLVSASGDKTIRVWDARNSSNSKCTDVVSTKGENINICWSPNGNTIAVGNKEDLITFIDTRTFKIMREEQFKFEVNEISWNNTNDLFFLTNGHGCVIILNYPNLKQIQTLNAHPANCICIKFDPKGKYFATGSADALVSLWDLDELCCVRCFSRLDWPVRTISFSHDGQMLASASEDLLIDIAMVETGEKIAEVPCSTPTFTVAWHPKEPILAFACDDKD-KHD--RDAGTIKLFGLQSSS 1015
            ++S  + Y   MQ  F+ H +T++F+ HS+KVHSV WSC GR LAS SFDKT SV+ LEK+RLVKE   +GH DSVDQLCWHP+NP+L V+ASGDKTIR+WD R +   KC   V+TKGENINICWSP+G TIAVGNK+D++TFID +T +   EEQFKFEVNEISWNN N++FFLTNG+GC+ IL+YP LK +Q++NAHP+NCICIKFDP GKYFATGSADALVSLWD+DEL CVRCFSRLDWPVRT+SFSHDG+MLASASED  IDIA VETG+K+ EV C +PTFTVAWHPK P+LAFACDDKD K+D  R+AGT+KLFGL + S
Sbjct:   27 VSSGPSRYVLGMQELFRGHSKTREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGDSVDQLCWHPSNPDLFVTASGDKTIRIWDVRTT---KCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPNDS 351
The following BLAST results are available for this feature:
BLAST of TCONS_00018420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THOC33.587e-17170.12THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=... [more]
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