TCONS_00018435 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018435
Unique Name	TCONS_00018435
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1686

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000300:314466..318646+
coding sequence from alignment at sc0000300:314466..318646+

transcript sequence

>TCONS_00018435 ID=TCONS_00018435|Name=TCONS_00018435|organism=Clytia hemisphaerica|type=transcript|length=1686bp
TTCACTTTCGTTTGAGACAGATTTGTTTATCAGTAGGGGCGAGTAAAGAG
AGATTGTTGAGTTTTTTCGATATGAGACCATTCATCCATCCATTTTCAAG
AGAGTTTACTccagcgaaaattttttttgcaaatctaACCTCGACCTTGT
GAGTGAGTACCACCCCTACGTCTTTATTACTCTTTGTACTTTACGCTGTT
TAACCACTGACAGTTTAAAGAACGATGAATGACGCATGCGTATTATATGG
GCTGAAATCGGTGCATCAACTGTATAATACAtgtcaataaaatttataac
ttttttctaatttcttGCAAGAATATATAGTACTGTATTTAGTTGAAATA
AGAGTAATGATGATATGATATTGCAACCTTTGGATGAAAAAACAATGTCA
GGATAAATGTGATGGGCGTGTGTGGGCGTGTGTGGGCGTGATGGGTATGA
AGAatagtaaacaaaagaaaaaagcgAAAGCAGTCATTGAGCACCTCAAA
GAAACAACATACTTCAGTGAAAAAGAGTTGACGCGATGGTACAAAGGATT
TCTGAAAGATTGCCCCAGTGGTAAACTTGGAAAAGAGGAGTTTCACAAGA
TCTACAAACAATTCTTTCCGTATGGCAACCCAGAAAATTTCTCATCGTTT
GTCTTTGGTGTCTTTGATCAGAATCACGATGGTTGTATAGAATTTGACGA
ATTCATCAAAGCGCTTTCCATAACGTCACGTGGATCGATGGAAGAAAAGC
TAAGATGGGCATTTCGTTTGTACGATCAAGACGAAGATGGTTACATCACA
AAAGAAGAAATGTTAAGCATTGTCCAATCAATTTACGTCATGGTGGATCG
AATGGCGAATTTTCCGGTGGACGAAAACACGCCAGAGAAACGAGTGGAGA
AAATCTTTTCGACGATGGATAAGAATTCCGATGGTGTTTTATCTATCGAT
GAATTCATTAACGGTTGTAAAGCTGATCCTTCGGTTATTCAAGCTCTCTC
CATTTACGATGGAGTCATGTGAGCATTTAACTTGGTAGGCTTCAAGACGT
ATTTCTCCTGGAACGATAGAATATAGTTATATACCAAGTTCGCCTGCCGA
TttataaaaaggaaaacaaTTTCATATCATATATTGCATTGTTCAAAAAG
TCTGCAGTTTTTTCTCCGGTGTTTATCTCGACCCTCTCTATATGGTGGTT
AGATTCCCTGCGCTTCTTTTGGTATAACGGAATTCGAGTAAATTCTGTTA
TATGGAAAAGTAAGCAAATGATTCACCATGGGAAAATTTTAGTCATTGTA
TCACGAATTTCAACTTTCTCTGACTTTTCCActtacagtagagtctccat
aactcgaacacaaaTTGGttcaagttgagaacatttcgagttatggagta
aggtttatatgGTTAAATGAAGGGACCATAAAGCTTTTTTGGGTTACAGa
atttcgaattaaagagactcGATTGCATAAGGAATTCCAAACATGCCGCT
TTGATTATTATTTAGACATCCCCTTCACAATCGGATTCCTTAGTAGTTGG
TAAACTGATTATTTTTGCTGGCTCAAAAGTATAAAgttatatttattatt
tatccGCCGAAAAAAATAACTTGTAAATATGAGAGTAGGAAATATCATGT
GATAATGTATAGTAAAGAAAATTTGTTGTTTTGCAC

Run BLAST on NCBI

protein sequence of TCONS_00018435-protein

>TCONS_00018435-protein ID=TCONS_00018435-protein|Name=TCONS_00018435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MKKQCQDKCDGRVWACVGVMGMKNSKQKKKAKAVIEHLKETTYFSEKELT
RWYKGFLKDCPSGKLGKEEFHKIYKQFFPYGNPENFSSFVFGVFDQNHDG
CIEFDEFIKALSITSRGSMEEKLRWAFRLYDQDEDGYITKEEMLSIVQSI
YVMVDRMANFPVDENTPEKRVEKIFSTMDKNSDGVLSIDEFINGCKADPS
VIQALSIYDGVM

Run BLAST on NCBI

transcript from alignment at sc0000300:314466..318646+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018435 ID=TCONS_00018435|Name=TCONS_00018435|organism=Clytia hemisphaerica|type=transcript|length=4181bp|location=Sequence derived from alignment at sc0000300:314466..318646+ (Clytia hemisphaerica)
TTCACTTTCGTTTGAGACAGATTTGTTTATCAGTAGGGGCGAGTAAAGAG
AGATTGTTGAGTTTTTTCGATATGAGACCATTCATCCATCCATTTTCAAG
AGAGTTTACTccagcgaaaattttttttgcaaatctaACCTCGACCTTGT
GAGTGAGTACCACCCCTACGTCTTTATTACTCTTTGTACTTTACGCTGTT
TAACCACTGACAGTTTAAAGAACGATGAATGACGCATGCGTATTATATGG
GCTGAAATCGGTGCATCAACTGTATAATACAtgtcaataaaatttataac
ttttttctaatttcttGCAAGAATATATAGTACTGTATTTAGTTGAAATA
AGAGTAATGATGATATGATATTGCAACCTTTGGATGAAAAAACAATGTCA
GGATAAATGTGATGGGCGTGTGTGGGCGTGTGTGGGCGTGATGGGTATGA
AGAatagtaaacaaaagaaaaaagcgAAAGCAGTCATTGAGCACCTCAAA
GAAACAACATACTGTAAGTATGGGGAAAATCCTCCCAAAAATACACCTTG
ACATTTAAAGTGAATCAACGGCTATTATATGTAATCATTGGAAAAGTTTA
TTCTGATTCTATCTGTGCTAAGCGCTCTTCACCAACCTTTATCACCACGA
CTAAGCTTGCTTTTACTCCGATGAAATAGTCCTTTGGAGCAATTTACTGA
GAGAttgtttttcttctgaaaatgtACTATTAACAATTTTCTGAGTATTT
ATGTGCAAATTCccaaaaatcgggtgttttccgctgagccttgaaatatt
ctttgcTTGTTCTCAcctaatattttggccatcgaagctctATGTTTTTG
TacagtttgctcttataaaatattattttacctGCTATGGTATTTCCCTA
TTCTAAATGAATtcatcttctttcttttgcagTCAGTGAAAAAGAGTTGA
CGCGATGGTATGAACTATTGTATTGTTTTTGTCATTTATTCTATGTGAAA
AAATACTTAAGTCGAACAGAGTTGAACCCAAACCACTGGCCCAAAGTCTG
TCGAAAGCTATAATGCTTCTTTCTACCTTTGAAACGtagaattttacttt
ttttatcacCTCGCTTCTTCAGCCAACCATTATTTCATTCTTCACATTCT
TCTAGGTACAAAGGATTTCTGAAAGATTGCCCCAGTGGTAAACTTGGAAA
AGAGGTCAGTAATTTTAATTGAATCTCAATGAAATATAAGATAAAAAACA
ACACTTGAGAAACCCCCAATCGATAGTTGACTTGCCAAGTCCCTCCTACA
TACCtttaaagaatctaaaatttCATAGTTTGAAGAATAAATACCTGCAt
tgagaaattttcagaagTCCAACCTAAACTTGTCTAGTCTACCTAAGACT
ACTTCCTTTATCTGAAAGTCCACACAGAGTGTGCACACTATGTAGTCGAT
TACAGAATTTTCTTTCGTTTAGGAGTTTCACAAGATCTACAAACAATTCT
TTCCGTATGGCAACCCAGAAAATTTCTCATCGTTTGTCTTTGGTGTCTTT
GATCAGAATCACGTGAGTAAAATTGTTGTATTCAAATCATTATGGTTCCG
TATCGTCCCGGTGTGGTTTCCGTTACTGATtgagagtgttcatattggtt
tctgagcaagaaaacggagcagttccgttccgatgaaaaaagtggagcgt
aACTGTTTAGATCCGTTTTGCTTcttaacgtcttcttttttgacgtttca
aatttttgatgtcCATACAGTGTTTCGGTACCGTTTTGTTTCGAACCGTA
ATGTctgaacattttcattttcccttACCATCACCTCCGTGCCAACTGCA
GATGTGAAATTTTTCTGGTTCATTCATTCTTCCAAATAAGGCCATAGTTT
TAATTTCACAGGTCAAAGGATGTTCTTGCGGTGGCTGTGCTTGAATGATA
GTTCTcgaatgggctttttcagaaattgTCCGCCCCCCTCGTGTTAAGGA
TATTCAATTTCGGGTTCCACAGCCCCCTGGATGTCTGGCTTATAAATAAA
GACTGTATATCCTGGATGTCCAAGTGGATAGAAGGGCTGATGATATCCAC
TACAATTTCGTTctgtaccccctggatatccaggcattTTGCCCGGTACC
GCTTGATATCTTCTCCCTCTTATAAGGTCATACACCCTAGATATCCCAGA
TAGCATTGAACCCCCTGGATGTCCATACAATATAATATTGTCAGTCTAAc
tgaaaacataaaattttattttgttggtAGGATGGTTGTATAGAATTTGA
CGAATTCATCAAAGCGCTTTCCATAACGTCACGTGGATCGATGGAAGAAA
AGCTAAGATGTAAGTCCAACACTTTTTAGCAGGTATTCATGACGGTGGAC
AGACCTGTTTGTATGAAAAAAACTGAACTTTCATTAGATGGGAGTTCGGA
CCTGATGGAAGGAGTTAAATTATCGTTAATGCTCTCACGGCGAAAGAATC
CAAGCTCAAAATGAAAACGAGGATctcttaagaaaaaaaaaacattttta
gttttctcagaCACTGATTTTAAGATAGAGCCTTTCTTTCGGCGgtattg
attttgaaaattggaaataGCTTGTCCAATGAGGGTAAATCAAATTTATG
CTTGTACAAAACAGATATTTTAGATTTCATGATAAATGCTCAACAAACTC
CTAATACTGAAAACCACACCAGTCTGTCGACAGCTTTGATTTTTCGATTG
ACGGATAGTTAGTTAACCCAGGGAAACATTTTGCTATTGAACTCATTCAC
CCAacttatttttcattgcatGACAGGGGCATTTCGTTTGTACGATCAAG
ACGAAGATGGTTACATCACAAAAGAAGAAATGTTAAGCATTGTCCAATCA
ATTTACGTCATGGTGGTAAGTCAATTTTGTGATGAGGTTTAGGCCCTGtc
cacatttttattttcagctgTTGTATCAAGTCAGAACATGTCGCACTTAT
CCGAAATCGGGATTTAGAACAAATCCCTCGTCAACTGTACCAACAGAAAG
CCTTTCGTACTGGATAGTTCTGAATTGTTCTCTAGTTCACTGCTACCGCG
AAACAACAACATCAACACTGAAATTTCTGAATATCTGCTTTGCTGATTTT
CGGCTTGTTCTTGTCCGTGAGTTGAGACACGAAAAGCCTTATTCAATGAG
TTTCATTTCCTTTGAAGAAGCTGTGGAAAATCACAGAAGATCTTACTCAA
ATTTACTGTGTGATGTTTTTAAAGGTTTAAGCGTGACTCTGAGAATCTGA
GATATTTTGAATAACTGATgtattttttccctttttcaagGATCGAATGG
CGAATTTTCCGGTGGACGAAAACACGCCAGAGAAACGAGTGGAGAAAATC
TTTTCGACGATGGATAAGAATTCCGATGGTGTTTTATCTATCGATGAATT
CATTAACGGTTGTAAAGCTGATCCTTCGGTTATTCAAGCTCTCTCCATTT
ACGATGGAGTCATGTGAGCATTTAACTTGGTAGGCTTCAAGACGTATTTC
TCCTGGAACGATAGAATATAGTTATATACCAAGTTCGCCTGCCGATttat
aaaaaggaaaacaaTTTCATATCATATATTGCATTGTTCAAAAAGTCTGC
AGTTTTTTCTCCGGTGTTTATCTCGACCCTCTCTATATGGTGGTTAGATT
CCCTGCGCTTCTTTTGGTATAACGGAATTCGAGTAAATTCTGTTATATGG
AAAAGTAAGCAAATGATTCACCATGGGAAAATTTTAGTCATTGTATCACG
AATTTCAACTTTCTCTGACTTTTCCActtacagtagagtctccataactc
gaacacaaaTTGGttcaagttgagaacatttcgagttatggagtaaggtt
tatatgGTTAAATGAAGGGACCATAAAGCTTTTTTGGGTTACAGaatttc
gaattaaagagactcGATTGCATAAGGAATTCCAAACATGCCGCTTTGAT
TATTATTTAGACATCCCCTTCACAATCGGATTCCTTAGTAGTTGGTAAAC
TGATTATTTTTGCTGGCTCAAAAGTATAAAgttatatttattatttatcc
GCCGAAAAAAATAACTTGTAAATATGAGAGTAGGAAATATCATGTGATAA
TGTATAGTAAAGAAAATTTGTTGTTTTGCAC

Coding sequence (CDS) from alignment at sc0000300:314466..318646+

>TCONS_00018435 ID=TCONS_00018435|Name=TCONS_00018435|organism=Clytia hemisphaerica|type=CDS|length=4473bp|location=Sequence derived from alignment at sc0000300:314466..318646+ (Clytia hemisphaerica)
ATGAAAAAACAATGTCAGGATAAATGTGATGGGCGTGTGTGGGCGTGTGT
GGGCGTGATGGGTATGAAGAatagtaaacaaaagaaaaaagcgAAAGCAG
TCATTGAGCACCTCAAAGAAACAACATACTTCAGTGAAAAAGAGTTGACG
CGATGGTACAAAGGATTTCTGAAAGATTGCCCCAGTGGTAAACTTGGAAA
AGAGGAGTTTCACAAGATCTACAAACAATTCTTTCCGTATGGCAACCCAG
AAAATTTCTCATCGTTTGTCTTTGGTGTCTTTGATCAGAATCACGATGGT
TGTATAGAATTTGACGAATTCATCAAAGCGCTTTCCATAACGTCACGTGG
ATCGATGGAAGAAAAGCTAAGATGGGCATTTCGTTTGTACGATCAAGACG
AAGATGGTTACATCACAAAAGAAGAAATGTTAAGCATTGTCCAATCAATT
TACGTCATGGTGGATCGAATGGCGAATTTTCCGGTGGACGAAAACACGCC
AGAGAAACGAGTGGAGAAAATCTTTTCGACGATGGATAAGAATTCCGATG
GTGTTTTATCTATCGATGAATTCATTAACGGTTGTAAAGCTGATCCTTCG
GTTATTCAAGCTCTCTCCATTTACGATGGAGTCATGTGAATGAAAAAACA
ATGTCAGGATAAATGTGATGGGCGTGTGTGGGCGTGTGTGGGCGTGATGG
GTATGAAGAatagtaaacaaaagaaaaaagcgAAAGCAGTCATTGAGCAC
CTCAAAGAAACAACATACTTCAGTGAAAAAGAGTTGACGCGATGGTACAA
AGGATTTCTGAAAGATTGCCCCAGTGGTAAACTTGGAAAAGAGGAGTTTC
ACAAGATCTACAAACAATTCTTTCCGTATGGCAACCCAGAAAATTTCTCA
TCGTTTGTCTTTGGTGTCTTTGATCAGAATCACGATGGTTGTATAGAATT
TGACGAATTCATCAAAGCGCTTTCCATAACGTCACGTGGATCGATGGAAG
AAAAGCTAAGATGGGCATTTCGTTTGTACGATCAAGACGAAGATGGTTAC
ATCACAAAAGAAGAAATGTTAAGCATTGTCCAATCAATTTACGTCATGGT
GGATCGAATGGCGAATTTTCCGGTGGACGAAAACACGCCAGAGAAACGAG
TGGAGAAAATCTTTTCGACGATGGATAAGAATTCCGATGGTGTTTTATCT
ATCGATGAATTCATTAACGGTTGTAAAGCTGATCCTTCGGTTATTCAAGC
TCTCTCCATTTACGATGGAGTCATGTGAATGAAAAAACAATGTCAGGATA
AATGTGATGGGCGTGTGTGGGCGTGTGTGGGCGTGATGGGTATGAAGAat
agtaaacaaaagaaaaaagcgAAAGCAGTCATTGAGCACCTCAAAGAAAC
AACATACTTCAGTGAAAAAGAGTTGACGCGATGGTACAAAGGATTTCTGA
AAGATTGCCCCAGTGGTAAACTTGGAAAAGAGGAGTTTCACAAGATCTAC
AAACAATTCTTTCCGTATGGCAACCCAGAAAATTTCTCATCGTTTGTCTT
TGGTGTCTTTGATCAGAATCACGATGGTTGTATAGAATTTGACGAATTCA
TCAAAGCGCTTTCCATAACGTCACGTGGATCGATGGAAGAAAAGCTAAGA
TGGGCATTTCGTTTGTACGATCAAGACGAAGATGGTTACATCACAAAAGA
AGAAATGTTAAGCATTGTCCAATCAATTTACGTCATGGTGGATCGAATGG
CGAATTTTCCGGTGGACGAAAACACGCCAGAGAAACGAGTGGAGAAAATC
TTTTCGACGATGGATAAGAATTCCGATGGTGTTTTATCTATCGATGAATT
CATTAACGGTTGTAAAGCTGATCCTTCGGTTATTCAAGCTCTCTCCATTT
ACGATGGAGTCATGTGAATGAAAAAACAATGTCAGGATAAATGTGATGGG
CGTGTGTGGGCGTGTGTGGGCGTGATGGGTATGAAGAatagtaaacaaaa
gaaaaaagcgAAAGCAGTCATTGAGCACCTCAAAGAAACAACATACTTCA
GTGAAAAAGAGTTGACGCGATGGTACAAAGGATTTCTGAAAGATTGCCCC
AGTGGTAAACTTGGAAAAGAGGAGTTTCACAAGATCTACAAACAATTCTT
TCCGTATGGCAACCCAGAAAATTTCTCATCGTTTGTCTTTGGTGTCTTTG
ATCAGAATCACGATGGTTGTATAGAATTTGACGAATTCATCAAAGCGCTT
TCCATAACGTCACGTGGATCGATGGAAGAAAAGCTAAGATGGGCATTTCG
TTTGTACGATCAAGACGAAGATGGTTACATCACAAAAGAAGAAATGTTAA
GCATTGTCCAATCAATTTACGTCATGGTGGATCGAATGGCGAATTTTCCG
GTGGACGAAAACACGCCAGAGAAACGAGTGGAGAAAATCTTTTCGACGAT
GGATAAGAATTCCGATGGTGTTTTATCTATCGATGAATTCATTAACGGTT
GTAAAGCTGATCCTTCGGTTATTCAAGCTCTCTCCATTTACGATGGAGTC
ATGTGAATGAAAAAACAATGTCAGGATAAATGTGATGGGCGTGTGTGGGC
GTGTGTGGGCGTGATGGGTATGAAGAatagtaaacaaaagaaaaaagcgA
AAGCAGTCATTGAGCACCTCAAAGAAACAACATACTTCAGTGAAAAAGAG
TTGACGCGATGGTACAAAGGATTTCTGAAAGATTGCCCCAGTGGTAAACT
TGGAAAAGAGGAGTTTCACAAGATCTACAAACAATTCTTTCCGTATGGCA
ACCCAGAAAATTTCTCATCGTTTGTCTTTGGTGTCTTTGATCAGAATCAC
GATGGTTGTATAGAATTTGACGAATTCATCAAAGCGCTTTCCATAACGTC
ACGTGGATCGATGGAAGAAAAGCTAAGATGGGCATTTCGTTTGTACGATC
AAGACGAAGATGGTTACATCACAAAAGAAGAAATGTTAAGCATTGTCCAA
TCAATTTACGTCATGGTGGATCGAATGGCGAATTTTCCGGTGGACGAAAA
CACGCCAGAGAAACGAGTGGAGAAAATCTTTTCGACGATGGATAAGAATT
CCGATGGTGTTTTATCTATCGATGAATTCATTAACGGTTGTAAAGCTGAT
CCTTCGGTTATTCAAGCTCTCTCCATTTACGATGGAGTCATGTGAATGAA
AAAACAATGTCAGGATAAATGTGATGGGCGTGTGTGGGCGTGTGTGGGCG
TGATGGGTATGAAGAatagtaaacaaaagaaaaaagcgAAAGCAGTCATT
GAGCACCTCAAAGAAACAACATACTTCAGTGAAAAAGAGTTGACGCGATG
GTACAAAGGATTTCTGAAAGATTGCCCCAGTGGTAAACTTGGAAAAGAGG
AGTTTCACAAGATCTACAAACAATTCTTTCCGTATGGCAACCCAGAAAAT
TTCTCATCGTTTGTCTTTGGTGTCTTTGATCAGAATCACGATGGTTGTAT
AGAATTTGACGAATTCATCAAAGCGCTTTCCATAACGTCACGTGGATCGA
TGGAAGAAAAGCTAAGATGGGCATTTCGTTTGTACGATCAAGACGAAGAT
GGTTACATCACAAAAGAAGAAATGTTAAGCATTGTCCAATCAATTTACGT
CATGGTGGATCGAATGGCGAATTTTCCGGTGGACGAAAACACGCCAGAGA
AACGAGTGGAGAAAATCTTTTCGACGATGGATAAGAATTCCGATGGTGTT
TTATCTATCGATGAATTCATTAACGGTTGTAAAGCTGATCCTTCGGTTAT
TCAAGCTCTCTCCATTTACGATGGAGTCATGTGAATGAAAAAACAATGTC
AGGATAAATGTGATGGGCGTGTGTGGGCGTGTGTGGGCGTGATGGGTATG
AAGAatagtaaacaaaagaaaaaagcgAAAGCAGTCATTGAGCACCTCAA
AGAAACAACATACTTCAGTGAAAAAGAGTTGACGCGATGGTACAAAGGAT
TTCTGAAAGATTGCCCCAGTGGTAAACTTGGAAAAGAGGAGTTTCACAAG
ATCTACAAACAATTCTTTCCGTATGGCAACCCAGAAAATTTCTCATCGTT
TGTCTTTGGTGTCTTTGATCAGAATCACGATGGTTGTATAGAATTTGACG
AATTCATCAAAGCGCTTTCCATAACGTCACGTGGATCGATGGAAGAAAAG
CTAAGATGGGCATTTCGTTTGTACGATCAAGACGAAGATGGTTACATCAC
AAAAGAAGAAATGTTAAGCATTGTCCAATCAATTTACGTCATGGTGGATC
GAATGGCGAATTTTCCGGTGGACGAAAACACGCCAGAGAAACGAGTGGAG
AAAATCTTTTCGACGATGGATAAGAATTCCGATGGTGTTTTATCTATCGA
TGAATTCATTAACGGTTGTAAAGCTGATCCTTCGGTTATTCAAGCTCTCT
CCATTTACGATGGAGTCATGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010341	XLOC_010341	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018435-protein	TCONS_00018435-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:314466..318646 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.75218	8.85405	3.26362	2.34149	2.46183	2.09895	2.00731	2.37071	5.36395	4.93921	2.67692	4.59122	6.42197	5.12638	1.36394	1.41981	7.62746	8.79745	9.80503	12.852	15.0027	15.3266	9.52919	11.1172	8.40733	15.8123	16.7646	20.4928	3.51918	3.34103

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

Blast

[Close]

BLAST of TCONS_00018435 vs. Swiss-Prot (Human)
Match: NCS1 (Neuronal calcium sensor 1 OS=Homo sapiens GN=NCS1 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 3.532e-80
Identity = 113/179 (63.13%), Postives = 144/179 (80.45%), Query Frame = 3

Query:  483 VIEHLKETTYFSEKELTRWYKGFLKDCPSGKLGKEEFHKIYKQFFPYGNPENFSSFVFGVFDQNHDGCIEFDEFIKALSITSRGSMEEKLRWAFRLYDQDEDGYITKEEMLSIVQSIYVMVDRMANFPVDENTPEKRVEKIFSTMDKNSDGVLSIDEFINGCKADPSVIQALSIYDGVM 1019
            V+E L   TYF+EKE+ +WYKGF+KDCPSG+L    F KIYKQFFP+G+P  F++FVF VFD+N DG IEF EFI+ALS+TSRG+++EKLRWAF+LYD D DGYIT+ EML IV +IY MV      P +ENTPEKRV++IF+ MDKN+DG L++ EF  G KADPS++QALS+YDG++
Sbjct:   12 VVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALSLYDGLV 190

The following BLAST results are available for this feature:

BLAST of TCONS_00018435 vs. Swiss-Prot (Human)

BLAST of TCONS_00018435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCS1	3.532e-80	63.13	Neuronal calcium sensor 1 OS=Homo sapiens GN=NCS1 ...	[more]

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TCONS_00018435 (transcript) - C. hemisphaerica