TCONS_00018468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018468
Unique NameTCONS_00018468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length6080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018468 ID=TCONS_00018468|Name=TCONS_00018468|organism=Clytia hemisphaerica|type=transcript|length=6080bp
TAATAGCCGACATAAAAAGATCAGTGGATCGCTTCGATGTCAAGCTGTGA
CATTTTGTCATCGATCTCGCATCAGGAGAATGAAACTGGTTTAATAGCGA
AATTGTGATGAAGGAGAAAATCATATTTTGAACGTATAGAAAATCTCAAT
TTGTGACGGACTGGCCATCATTCTGGATGAGATATTTTGACTGTTTTGAT
TTCAGTTTCTAGGAGAGTGATTTTCTCTCAAGTTGGCAACGAGAAGAAAC
TACTAATTAAGAGGATTGGCTTGATACTTTAATAGGATTATACATTGAGT
GATGTTATCGTAAGATCCTTATCTCGCACAAAACTTTATTCACAAACATC
ACTTTTGTTAATTAATGCTTAGAAAGCAGGCTAGGATTCGACTGTTGAGA
GCACAAGGAGAATGGCTATACAGAGGTTTCTACTTCTACTACTGACGTTG
AATGTTTTGTTTCCAATTTGTTTCACCGATGATTCACATAACATGCATGA
AGAAGCAATGTCGGACGGTATTTCTCCTATCTTCATCACACCAGAGATGT
ATTTACACGCCCACTTGTTCCCGCGCGACGAGCAGAAGCGGCCGCAACCA
CAACGCTTTCATCCACATTACGAGCGCCCTGTGCAAGTAAACCTGACCAT
AGCTCTCATTTCAATCGTGGATATCGAACCTCAAAACGAAGTCATCATCA
TCAATGCCAACTTTGAACAGAGTTGGTTCAACCCTAGCATGAGTTGGGAT
CCGCACAATTTTGCTGGCATCAAAAAGATCAACGTTCGTTCAGGAATGAC
TTGGGTTCCCGATATTTTTGTCCACGCCAACGTGGAAAATGACAAGAAGT
ACAACGGTCTGATGGATAAAGTCAACACGTACGTCAAAGTCAATCACGAA
GGGCTCCATACGTGGAATGCCGCCGTCACTCTACGTATGGGTTGCGGAAT
GAACATTGAGAATTATCCTTTCGATACACAAAAATGTCCCTTAAGGTTCG
GCAGCTTGTCCATGGATGCTACGAGGATGAAATTGGTTCCGAAGCCAATC
AACCTGAAGTCTTATGGAGCAAGCCCTGAATGGATTTTCATCTCAATGGA
TCACGTGGGCGAAGAAAAGTCGTACCCAGGTTCCGACCATCCACATACCA
CAGCCGTCTACACCGTGGCCATGCGCAGAAAAGCACTTTACCCGATAACC
ATGCTCATCCTTCCAAATTTAATCTTAGCTGGTTTGACCATTCTCGTCTT
CTCCATCCCAACACCAACAGGCGAGCGAGCCATGTACATTTTCACTATCT
TTCTGGCGGTTGCTTGGTACATGACATCGAATATCGAAACAATGCCCAGC
AGTTCACAAACAATCCCCCTCTACACCAAATTTTTGGCTATCAATCTCAT
CAGTTTGTCCTTACTATGTATCAGCTTGTGCTTCACAATCGTGTGTTTTT
ACACGGATCCACAGATCAGTGACATGCCGGGATGGATCCGAGTCAACATT
CTCGGTCACGGTGCAAAGTTCTTCGGAATGGATGTCGATAAAAAAGTCTC
TGAGTGGAGAGAAGAGCTTTGTGAGGCGAGGCAGTACGACCACCTGCTCC
CTGAAGAATATGAGCCGGACCAGGAAGGGGAGGTTCAGGCTGAAGAAGGA
AACGAGAAGGCACCTGGTGATCTGTGGGTAGACTGTAGCAAGCCCGAAGC
TGGAGCTTTGATGAACATTTTCAACCCAGTTGAAATGAGACAAGTACATC
TGTTGATCGAAGATTATTTGCGAAGGCTGGAAGAGATCGAGGATTCAAAA
TGGGCGCAAAGAGAATGGGAACTCGTGGCGCAAATCCTGGACAAAGCCTT
TCTTTATGTTTTCTCCTCGGCCCTGACGTTAACAGTGGTTTCGTGTTCGA
TCCATATCCTGAACCTNTCTACTGCTATGGAATttcactgcatttcaaac
catacccccttggaatagaaatggactcctcaacagggggtgcacggttt
ttttctggaaaagcccattcctcgagggaattctattataatacaattga
aacaatcccacaatgtatcgctttttaagaaaaatcaaaaactccgataa
ggtctattcaaCGAAAATGCGATAGATTTACTGGAAACGTTTTCAACGAT
AGGTAAAACAGTTTCAAGGACCCGATGAAGAAGATTTTGGAAAGTCTTAG
AATAAGAGATATGACTAATTGATTTTTAGAATAACATTATTATTGATTCt
ctcggtcaaaatattaatttgTCTTATTATGGTTATATCTAATTGGAATT
ATTTCCTGAGTTGACAAACCGAATTCCCCAAAGTTGGCGACTCGGCATCA
TTACTACGTCATTAATGAACAGTGCCCGGTCTTTTGAAGATATTACATTT
GACCTCAAGCTTCCTCTTGTTGTGTTGCAAAACCTACGCCAATAAAACTC
ATTAAGGAAACCGAAGCTTATCTCGAAAagaattattcgaattagaattt
acaaatattttttgtgttgGAACGTTTCCACAGGGGAATGTAGACAACTC
AAACTCTTAATACATAACTCTCTTAGAAAATTTTCCCATCCATCGAGCTC
TCTATGAATAATTTGTGACGTCATCTTCAGTTTTCAGCAACGTCTTCTCT
TTGACTTAtctaaaaaatgaattaaaataaaaactatctattttatttaa
aaatctaaaattctcATAAAAGTATCTAATAAAGACTTTCAAGAAAAAac
tatctttgaaaaaattcctaCAAATTTACTATTTTCTCCGTAAAAATATT
ACAACCGCGTAAAATGAGATCAGTTTAGCCTCTTCTTCATGGAGGGACGG
GGGAGAGCGGGAGGAGAGGAGCAGGAGGTTGCTCTTCACCGTAGTGATTA
TTACTTCCATTGTTATTTTCGTTGTTTAGCGGAAGTGGTGGTTTAATATT
AAACGGTTTGCTCTCTTCCGTTGTGTTTCCGGTGGCTGAGGGAGTTCCGG
TTGTCCCACTCGAGCCACCGCCGTGAGCAAAATTAATATGAAGTTGCATT
TTGTCTTTTCTTACAAAACCTTTGTTGCATTCGGGGCATTTAAGTGGAAG
TTCGTTATTAGGTAAATGAGTGTACATGTGTCGGTTCAAATCCCCTTTCC
AGCGATAACGTCTTTGGCAAATATTACACCCGaatggtttttcattttta
tgcgCTAATAAATGCTGTTTTAATCCCGTTCCCGATCGGTACTCTTTCCC
GCATAGATAACAAAAGAAAGTCTTTTTATGAGTCGGCATATTCTCTTCGT
ACACTCCGTGAGTGTTGTGAGTATTGTGAGGAGAAGCAGAATTGCGACGA
ACAGAATAAGTTGACACAACTTGTAGTTCGTGTGGATCCCGATGTCCGGT
GTTCGGGGATAAAGCGGAAGGGAGCCGATAATTCGGTGACCCGTACAAGT
CTCTAGTGGCCGCTAACGGCTTTTCCATACTCATTGGAAAACCACGATGT
TCGGGAGGGACGTGCGTGGGAAGCCCTTCTAAGCGCGTGAAGGGGTTATA
AAGGTGATCGGCTTCTCGTCTATCCTCGCGCTCtctttctctttctctct
cACGTTCAACGGTAGTTGTGATTTCTTGCTTGATTTGAGTGGCGCGTTCA
TGATCCATGTACTGTGGCTCGGGCGGCTCTTCATCGTTCGTGCCGGGCGT
TTGTAAGGGTGGAGGTGGTGGTAAATGCTCGTTTGGTTCACTAGTGGGCG
GTAATGGGCGGGGTTGGCGTTGCTTCAAGATTTTCATCCTTTTATGTCCG
AGGATAGAGATTTTTTCGCTGTCCAAATACATATCCTCTGTCCGATCTAC
GTCCGAATTTTCTTCGTCGTTGTATGTATCGAAATTGACGCTGGACGAAT
TATCTTGTTCCGTGTTACGTTCATGTTTGTCGGAGTTTGACGGCGCAACC
ACTTGAAGTTCTTCACGANTCTACTGCTATGGAATttcactgcatttcaa
accatacccccttggaatagaaatggactcctcaacagggggtgcacggt
ttttttctggaaaagcccattcctcgagggaattctattataatacaatt
gaaacaatcccacaatgtatcgctttttaagaaaaatcaaaaactccgat
aaggtctattcaaCGAAAATGCGATAGATTTACTGGAAACGTTTTCAACG
ATAGGTAAAACAGTTTCAAGGACCCGATGAAGAAGATTTTGGAAAGTCTT
AGAATAAGAGATATGACTAATTGATTTTTAGAATAACATTATTATTGATT
CtctcggtcaaaatattaatttgTCTTATTATGGTTATATCTAATTGGAA
TTATTTCCTGAGTTGACAAACCGAATTCCCCAAAGTTGGCGACTCGGCAT
CATTACTACGTCATTAATGAACAGTGCCCGGTCTTTTGAAGATATTACAT
TTGACCTCAAGCTTCCTCTTGTTGTGTTGCAAAACCTACGCCAATAAAAC
TCATTAAGGAAACCGAAGCTTATCTCGAAAagaattattcgaattagaat
ttacaaatattttttgtgttgGAACGTTTCCACAGGGGAATGTAGACAAC
TCAAACTCTTAATACATAACTCTCTTAGAAAATTTTCCCATCCATCGAGC
TCTCTATGAATAATTTGTGACGTCATCTTCAGTTTTCAGCAACGTCTTCT
CTTTGACTTAtctaaaaaatgaattaaaataaaaactatctattttattt
aaaaatctaaaattctcATAAAAGTATCTAATAAAGACTTTCAAGAAAAA
actatctttgaaaaaattcctaCAAATTTACTATTTTCTCCGTAAAAATA
TTACAACCGCGTAAAATGAGATCAGTTTAGCCTCTTCTTCATGGAGGGAC
GGGGGAGAGCGGGAGGAGAGGAGCAGGAGGTTGCTCTTCACCGTAGTGAT
TATTACTTCCATTGTTATTTTCGTTGTTTAGCGGAAGTGGTGGTTTAATA
TTAAACGGTTTGCTCTCTTCCGTTGTGTTTCCGGTGGCTGAGGGAGTTCC
GGTTGTCCCACTCGAGCCACCGCCGTGAGCAAAATTAATATGAAGTTGCA
TTTTGTCTTTTCTTACAAAACCTTTGTTGCATTCGGGGCATTTAAGTGGA
AGTTCGTTATTAGGTAAATGAGTGTACATGTGTCGGTTCAAATCCCCTTT
CCAGCGATAACGTCTTTGACAAATATTACACCCGaatggtttttcatttt
tatgtgcTAATAAATGCTGTTTTAATCCCGTTCCCGATCGGTACTCTTTC
CCGCATAGATAACAAAAGAAAGTCTTTTTATGAGTCGGCATATTCTCTTC
GTACACTCCGTGAGTGTTGTGAGTATTGTGAGGAGAAGCAGAATTGCGAC
GAACAGAATAAGTTGACACAACTTGTAGTTCGTGTGGATCCCGATGTCCG
GTGTTCGGGGATAAAGCGGAAGGGAGCCGATAATTCAGTGACCCGTACAA
GTCTCTAGTGGCCGCTAACGGCTTTTCCATACTCATTGGAAAACCACGAT
GTTCGGGAGGGACGTGCGTGGGAAGCCCTTCTAAGCGCGTGAAGGGGTTA
TAAAGGTGATCGGCTTCTCGTCTATCCTCGCGCTCtctttctctttctct
ctcACGTTCAACGGTAGTTGTGATTTCTTGCTTGATTTGAGTGGCGCGTT
CATGATCCATGTACTGTGGCTCGGGCGGCTCTTCATCGTTCGTGCTGGGC
GTTTGTAAGGGTGGAGGTGGTGGTAAATGCTCGTTTGGTTCACTAGTGGG
CGGTAATGGGCGGGGTTGGCGTTGCTTCAAGATTTTCATCCTTTTATGTC
CGAGGATGGAGATTTTTTCGCTGTCCAAATACATATCCTCTGTCCGATCT
ACGTCCGAATTTTCTTCGTCGTTGTATGTATCGAAATTGACGCTGGACGA
ATTATCTTGTTCCGTGTTACGTTCATGTTTGTCGGAGTTTGACGGCGCAA
CCACTTGAAGTTCTTCACGAGATTCAGAGTCTGACGTCAACACGTAAACC
TGCGGTGTCTGGTCACACGGTGAATCAATC
Run BLAST on NCBI

transcript from alignment at sc0000300:122493..129729-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018468 ID=TCONS_00018468|Name=TCONS_00018468|organism=Clytia hemisphaerica|type=transcript|length=7237bp|location=Sequence derived from alignment at sc0000300:122493..129729- (Clytia hemisphaerica)
TAATAGCCGACATAAAAAGATCAGTGGATCGCTTCGATGTCAAGCTGTGA
CATTTTGTCATCGATCTCGCATCAGGAGAATGAAACTGGTTTAATAGCGA
AATTGTGATGAAGGAGAAAATCATATTTTGAACGTATAGAAAATCTCAAT
TTGTGACGGACTGGCCATCATTCTGGATGAGATATTTTGACTGTTTTGAT
TTCAGTTTCTAGGAGAGTGATTTTCTCTCAAGTTGGCAACGAGAAGAAAC
TACTAATTAAGAGGATTGGCTTGATACTTTAATAGGATTATACATTGAGT
GATGTTATCGTAAGATCCTTATCTCGCACAAAACTTTATTCACAAACATC
ACTTTTGTTAATTAATGCTTAGAAAGCAGGCTAGGATTCGACTGTTGAGA
GCACAAGGAGAATGGCTATACAGAGGTTTCTACTTCTACTACTGACGTTG
AATGTTTTGTTTCCAATTTGTTTCACCGATGATTCACATAACATGCATGA
AGAAGCAATGTCGGACGGTATTTGTAAGTATCAAGACTTACAAATTAACT
TTTTCGTCTTTTTTACTCAAGAACTTACCAGAAAACATCCCTGACTGATC
CCCAACACGAGTAGGTGGGACTCCCTCCTCACTCCCGTCCTCACTTCAAT
AGTTATCCTGAAAATCAACTTAAAATCTCACTGGTTAATAATTTCTCACT
AAACAGCGAAATTGTGATTATAAAGAAAACAATTTTGAGCGTTCTTGAAA
ATCATCAGGAAGAAATACTATACAAGATTGAATTGTTCTCTTTCCAGCTC
CTATCTTCATCACACCAGAGATGTATTTACACGCCCACTTGTTCCCGCGC
GACGAGCAGAAGCGGCCGCAACCACAACGCTTTCATCCACATTACGAGCG
CCCTGTGCAAGTAAACCTGACCATAGCTCTCATTTCAATCGTGGATATCG
AACCTCAAAACGAAGTCATCATCATCAATGCCAACTTTGAACAGGTACTT
CAAGAAAGAAGCATATTGTGAAAAATCTAAACAGTTTTCTTTAATGTCTC
GACTTGCTGTCTTTGGAAGCTCTTCAATCCAACCTCAGAACAATCGATAT
CACTCCTACTAAATGATAATGAGGATTTGTCGGTGTCTCGATGGCTTGAA
CGAAGAGCTTCCAAATTAAAATTGTTTTGAAATAACAGAAAATAAGACAA
GAGTAAAAGGAACCTAAACGTTCTTACTCAAACAACTTTTTTCCTCCACA
GAGTTGGTTCAACCCTAGCATGAGTTGGGATCCGCACAATTTTGCTGGCA
TCAAAAAGATCAACGTTCGTTCAGGAATGACTTGGGTTCCCGATATTTTT
GTCCACGCCAAGTAAGAAAATAGCATCTCGTTTGACATCTAGTAACCCGT
CTAAATGTACTGTACACCCCTGTATCCGCACATTTCAGCCAGTTTTTCGT
AATCTTAGTTTCCAAAATGGGGAAAAAGTTTTAACTGTTTTGAACTTGAC
GAATTCTTTGTTCCTCTTGTCAAGAACTAGGGTTGTTGACAGATAAAGCG
TGGATTCTATACAGTAGATTTAAAGATCACTCATCCCAATTGTTTTCCAT
GATTCACCAAACAGCGTGGAAAATGACAAGAAGTACAACGGTCTGATGGA
TAAAGTCAACACGTACGTCAAAGTCAATCACGAAGGGCTCCATACGTGGA
ATGCCGCCGTCACTCTACGTATGGGTTGCGGAATGAACATTGAGAATTAT
CCTTTCGATACACAAAAATGTCCCTTAAGGTTCGGCAGCTTGTCCATGGA
TGCTACGAGGATGAAATTGGTTCCGAAGCCAATCAACCTGAAGTCTTATG
GAGGTAAGTGAGAGCTTTCGGGATTTTTTCTTCTTCTTTTTCGTGCTGGT
TGACAAGGAAACAAAGATTGGAGATATCACCCTTCTGTACAAATTTTAAA
CCTCTCTTCACGAGGAGGCGTTAAGCTTTCTTTTGAAAAGAAATCAGAGC
TTTATGGAATATTTGGAATATATGGAAAGTGGCATCTTTATCATACATTT
TTAGCAAGCCCTGAATGGATTTTCATCTCAATGGATCACGTGGGCGAAGA
AAAGTCGTACCCAGGTTCCGACCATCCACATACCACAGCCGTCTACACCG
TGGCCATGCGCAGAAAAGCACTTTACCCGATAACCATGCTCATCCTTCCA
AATTTAATCTTAGCTGGTTTGACCATTCTCGTCTTCTCCATCCCAACACC
AACAGGTAGTCATTCTTTATACATTATTCTTCTTCGTAAGCGTATGGTAG
TTTGAACATTTACAACGCAGATCAAAACAATTATTCTCCGAAATCAATTC
ATCAACAAACCTCACTCAGAACAAGTAAAAAGAAGCACACATTATTTGAA
TTAAATACATTACTTATTTGATTTCAGGCGAGCGAGCCATGTACATTTTC
ACTATCTTTCTGGCGGTTGCTTGGTACATGACATCGAATATCGAAACAAT
GCCCAGCAGTTCACAAACAATCCCCCTCTACACCAAATTTTTGGCTATCA
ATCTCATCAGTTTGTCCTTACTATGTATCAGCTTGTGCTTCACAATCGTG
TGTTTTTACACGGATCCACAGATCAGTGACATGCCGGGATGGATCCGAGT
CAACATTCTCGGTCACGGTGCAAAGTTCTTCGGAATGGATGTCGATAAAA
AAGTCTCTGAGTGGAGAGAAGAGCTTTGTGAGGCGAGGCAGTACGACCAC
CTGCTCCCTGAAGAATATGAGCCGGACCAGGAAGGGGAGGTTCAGGCTGA
AGAAGGAAACGAGAAGGCACCTGGTGATCTGTGGGTAGACTGTAGCAAGC
CCGAAGCTGGAGCTTTGATGAACATTTTCAACCCAGTTGAAATGAGACAA
GTACATCTGTTGATCGAAGATTATTTGCGAAGGCTGGAAGAGATCGAGGA
TTCAAAATGGGCGCAAAGAGAATGGGAACTCGTGGCGCAAATCCTGGACA
AAGCCTTTCTTTATGTTTTCTCCTCGGCCCTGACGTTAACAGTGGTTTCG
TGTTCGATCCATATCCTGAACCTNTCTACTGCTATGGAATTTCACTGCAT
TTCAAACCATACCCCCTTGGAATAGAAATGGACTCCTCAACAGGGGGTGC
ACGGTTTTTTTCTGGAAAAGCCCATTCCTCGAGGGAATTCTATTATAATA
CAATTGAAACAATCCCACAATGTATCGCTTTTTAAGAAAAATCAAAAACT
CCGATAAGGTCTATTCAACGAAAATGCGATAGATTTACTGGAAACGTTTT
CAACGATAGGTAAAACAGTTTCAAGGACCCGATGAAGAAGATTTTGGAAA
GTCTTAGAATAAGAGATATGACTAATTGATTTTTAGAATAACATTATTAT
TGATTCTCTCGGTCAAAATATTAATTTGTCTTATTATGGTTATATCTAAT
TGGAATTATTTCCTGAGTTGACAAACCGAATTCCCCAAAGTTGGCGACTC
GGCATCATTACTACGTCATTAATGAACAGTGCCCGGTCTTTTGAAGATAT
TACATTTGACCTCAAGCTTCCTCTTGTTGTGTTGCAAAACCTACGCCAAT
AAAACTCATTAAGGAAACCGAAGCTTATCTCGAAAAGAATTATTCGAATT
AGAATTTACAAATATTTTTTGTGTTGGAACGTTTCCACAGGGGAATGTAG
ACAACTCAAACTCTTAATACATAACTCTCTTAGAAAATTTTCCCATCCAT
CGAGCTCTCTATGAATAATTTGTGACGTCATCTTCAGTTTTCAGCAACGT
CTTCTCTTTGACTTATCTAAAAAATGAATTAAAATAAAAACTATCTATTT
TATTTAAAAATCTAAAATTCTCATAAAAGTATCTAATAAAGACTTTCAAG
AAAAAACTATCTTTGAAAAAATTCCTACAAATTTACTATTTTCTCCGTAA
AAATATTACAACCGCGTAAAATGAGATCAGTTTAGCCTCTTCTTCATGGA
GGGACGGGGGAGAGCGGGAGGAGAGGAGCAGGAGGTTGCTCTTCACCGTA
GTGATTATTACTTCCATTGTTATTTTCGTTGTTTAGCGGAAGTGGTGGTT
TAATATTAAACGGTTTGCTCTCTTCCGTTGTGTTTCCGGTGGCTGAGGGA
GTTCCGGTTGTCCCACTCGAGCCACCGCCGTGAGCAAAATTAATATGAAG
TTGCATTTTGTCTTTTCTTACAAAACCTTTGTTGCATTCGGGGCATTTAA
GTGGAAGTTCGTTATTAGGTAAATGAGTGTACATGTGTCGGTTCAAATCC
CCTTTCCAGCGATAACGTCTTTGGCAAATATTACACCCGAATGGTTTTTC
ATTTTTATGCGCTAATAAATGCTGTTTTAATCCCGTTCCCGATCGGTACT
CTTTCCCGCATAGATAACAAAAGAAAGTCTTTTTATGAGTCGGCATATTC
TCTTCGTACACTCCGTGAGTGTTGTGAGTATTGTGAGGAGAAGCAGAATT
GCGACGAACAGAATAAGTTGACACAACTTGTAGTTCGTGTGGATCCCGAT
GTCCGGTGTTCGGGGATAAAGCGGAAGGGAGCCGATAATTCGGTGACCCG
TACAAGTCTCTAGTGGCCGCTAACGGCTTTTCCATACTCATTGGAAAACC
ACGATGTTCGGGAGGGACGTGCGTGGGAAGCCCTTCTAAGCGCGTGAAGG
GGTTATAAAGGTGATCGGCTTCTCGTCTATCCTCGCGCTCTCTTTCTCTT
TCTCTCTCACGTTCAACGGTAGTTGTGATTTCTTGCTTGATTTGAGTGGC
GCGTTCATGATCCATGTACTGTGGCTCGGGCGGCTCTTCATCGTTCGTGC
CGGGCGTTTGTAAGGGTGGAGGTGGTGGTAAATGCTCGTTTGGTTCACTA
GTGGGCGGTAATGGGCGGGGTTGGCGTTGCTTCAAGATTTTCATCCTTTT
ATGTCCGAGGATAGAGATTTTTTCGCTGTCCAAATACATATCCTCTGTCC
GATCTACGTCCGAATTTTCTTCGTCGTTGTATGTATCGAAATTGACGCTG
GACGAATTATCTTGTTCCGTGTTACGTTCATGTTTGTCGGAGTTTGACGG
CGCAACCACTTGAAGTTCTTCACGANTCTACTGCTATGGAATTTCACTGC
ATTTCAAACCATACCCCCTTGGAATAGAAATGGACTCCTCAACAGGGGGT
GCACGGTTTTTTTCTGGAAAAGCCCATTCCTCGAGGGAATTCTATTATAA
TACAATTGAAACAATCCCACAATGTATCGCTTTTTAAGAAAAATCAAAAA
CTCCGATAAGGTCTATTCAACGAAAATGCGATAGATTTACTGGAAACGTT
TTCAACGATAGGTAAAACAGTTTCAAGGACCCGATGAAGAAGATTTTGGA
AAGTCTTAGAATAAGAGATATGACTAATTGATTTTTAGAATAACATTATT
ATTGATTCTCTCGGTCAAAATATTAATTTGTCTTATTATGGTTATATCTA
ATTGGAATTATTTCCTGAGTTGACAAACCGAATTCCCCAAAGTTGGCGAC
TCGGCATCATTACTACGTCATTAATGAACAGTGCCCGGTCTTTTGAAGAT
ATTACATTTGACCTCAAGCTTCCTCTTGTTGTGTTGCAAAACCTACGCCA
ATAAAACTCATTAAGGAAACCGAAGCTTATCTCGAAAAGAATTATTCGAA
TTAGAATTTACAAATATTTTTTGTGTTGGAACGTTTCCACAGGGGAATGT
AGACAACTCAAACTCTTAATACATAACTCTCTTAGAAAATTTTCCCATCC
ATCGAGCTCTCTATGAATAATTTGTGACGTCATCTTCAGTTTTCAGCAAC
GTCTTCTCTTTGACTTATCTAAAAAATGAATTAAAATAAAAACTATCTAT
TTTATTTAAAAATCTAAAATTCTCATAAAAGTATCTAATAAAGACTTTCA
AGAAAAAACTATCTTTGAAAAAATTCCTACAAATTTACTATTTTCTCCGT
AAAAATATTACAACCGCGTAAAATGAGATCAGTTTAGCCTCTTCTTCATG
GAGGGACGGGGGAGAGCGGGAGGAGAGGAGCAGGAGGTTGCTCTTCACCG
TAGTGATTATTACTTCCATTGTTATTTTCGTTGTTTAGCGGAAGTGGTGG
TTTAATATTAAACGGTTTGCTCTCTTCCGTTGTGTTTCCGGTGGCTGAGG
GAGTTCCGGTTGTCCCACTCGAGCCACCGCCGTGAGCAAAATTAATATGA
AGTTGCATTTTGTCTTTTCTTACAAAACCTTTGTTGCATTCGGGGCATTT
AAGTGGAAGTTCGTTATTAGGTAAATGAGTGTACATGTGTCGGTTCAAAT
CCCCTTTCCAGCGATAACGTCTTTGACAAATATTACACCCGAATGGTTTT
TCATTTTTATGTGCTAATAAATGCTGTTTTAATCCCGTTCCCGATCGGTA
CTCTTTCCCGCATAGATAACAAAAGAAAGTCTTTTTATGAGTCGGCATAT
TCTCTTCGTACACTCCGTGAGTGTTGTGAGTATTGTGAGGAGAAGCAGAA
TTGCGACGAACAGAATAAGTTGACACAACTTGTAGTTCGTGTGGATCCCG
ATGTCCGGTGTTCGGGGATAAAGCGGAAGGGAGCCGATAATTCAGTGACC
CGTACAAGTCTCTAGTGGCCGCTAACGGCTTTTCCATACTCATTGGAAAA
CCACGATGTTCGGGAGGGACGTGCGTGGGAAGCCCTTCTAAGCGCGTGAA
GGGGTTATAAAGGTGATCGGCTTCTCGTCTATCCTCGCGCTCTCTTTCTC
TTTCTCTCTCACGTTCAACGGTAGTTGTGATTTCTTGCTTGATTTGAGTG
GCGCGTTCATGATCCATGTACTGTGGCTCGGGCGGCTCTTCATCGTTCGT
GCTGGGCGTTTGTAAGGGTGGAGGTGGTGGTAAATGCTCGTTTGGTTCAC
TAGTGGGCGGTAATGGGCGGGGTTGGCGTTGCTTCAAGATTTTCATCCTT
TTATGTCCGAGGATGGAGATTTTTTCGCTGTCCAAATACATATCCTCTGT
CCGATCTACGTCCGAATTTTCTTCGTCGTTGTATGTATCGAAATTGACGC
TGGACGAATTATCTTGTTCCGTGTTACGTTCATGTTTGTCGGAGTTTGAC
GGCGCAACCACTTGAAGTTCTTCACGAGATTCAGAGTCTGACGTCAACAC
GTAAACCTGCGGTGTCTGGTCACACGGTGAATCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010346XLOC_010346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018468-exon-sc0000300-1575043694:129207..129729TCONS_00018468-exon-sc0000300-1575043694:129207..129729Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1575043694:128736..128932TCONS_00018468-exon-sc0000300-1575043694:128736..128932Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1575043694:128369..128478TCONS_00018468-exon-sc0000300-1575043694:128369..128478Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1575043694:127877..128115TCONS_00018468-exon-sc0000300-1575043694:127877..128115Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1575043694:127475..127675TCONS_00018468-exon-sc0000300-1575043694:127475..127675Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1575043694:122493..127302TCONS_00018468-exon-sc0000300-1575043694:122493..127302Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1510915933:129207..129729TCONS_00018468-exon-sc0000300-1510915933:129207..129729Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1510915933:128736..128932TCONS_00018468-exon-sc0000300-1510915933:128736..128932Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1510915933:128369..128478TCONS_00018468-exon-sc0000300-1510915933:128369..128478Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1510915933:127877..128115TCONS_00018468-exon-sc0000300-1510915933:127877..128115Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1510915933:127475..127675TCONS_00018468-exon-sc0000300-1510915933:127475..127675Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1510915933:122493..127302TCONS_00018468-exon-sc0000300-1510915933:122493..127302Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1491911889:129207..129729TCONS_00018468-exon-sc0000300-1491911889:129207..129729Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1491911889:128736..128932TCONS_00018468-exon-sc0000300-1491911889:128736..128932Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1491911889:128369..128478TCONS_00018468-exon-sc0000300-1491911889:128369..128478Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1491911889:127877..128115TCONS_00018468-exon-sc0000300-1491911889:127877..128115Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1491911889:127475..127675TCONS_00018468-exon-sc0000300-1491911889:127475..127675Clytia hemisphaericaexon
TCONS_00018468-exon-sc0000300-1491911889:122493..127302TCONS_00018468-exon-sc0000300-1491911889:122493..127302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:122493..129729 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.367707	0.451782	0	0	7.57674e-09	0.011862	0.278622	0.274091	0.00234363	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00018468 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 152.14 bits (383), Expect = 6.472e-38
Identity = 114/453 (25.17%), Postives = 205/453 (45.25%), Query Frame = 1 
Query:  622 ERPVQVNLTIALISIVDIEPQNEVIIINANFEQSWFNPSMSWDPHNFAGIKKINVRSGMTWVPDIFVHANVENDKKYNGLMDKVNTYVKVNHEGLHTWNAAVTLRMGCGMNIENYPFDTQKCPLRFGSLSMDATRMKLVPKPINLKSYGASPEWIFISMDHVGEEKSYPGSDHPHTTAVYTVAMRRKALYPITMLILPNLILAGLTILVFSIPTPTGERAMYIFTIFLAVAWYMTSNIETMPSSSQTIPLYTKFLAINXXXXXXXXXXXXFTIVCFYTDPQISDMPGWIRVNILGHGAKFFGMDVDKKVSEWR-EELCEARQYDHLLPEEYEPDQEGEVQAEEGNEKAPGDLWVD----CSKPEAGALMNIFNPVEMRQVHLL--------IEDYLRRLEEI----------EDSKWAQREWELVAQILDKAFLYVFSSALTLTVVSCSIHIL 1911
             +P+ V  +++L+ I+D++ +N+V+  N   + SW +  + W+   + G+K +    G  W PDI ++ +   D++++      +T V VN  G   +      +  C +++  +PFD Q C L+FGS S     + L  +  ++  Y  + EW  + +     E+ Y     P+    +TV MRR+ LY    L++P ++++ L +LVF +P  +GE+     T+ L++  +M    E MP++S ++PL  ++ A  +I + L  +     +   + DP    MP W RV +L   A F  M   K+  E +    C+ +Q    L    E        A  GN    G   +D       P++G +            HLL          D  + LEE+          ++S+    EW+  A ++D+  L  FS     T++ C+I IL
Sbjct:   48 SQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNSA--DERFDA---TFHTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQMQEADISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRM---KRPGEDKVRPACQHKQRRCSL-ASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDRLCLMAFS---VFTII-CTIGIL 487
The following BLAST results are available for this feature:
BLAST of TCONS_00018468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA76.472e-3825.17Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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