TCONS_00018473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018473
Unique NameTCONS_00018473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018473 ID=TCONS_00018473|Name=TCONS_00018473|organism=Clytia hemisphaerica|type=transcript|length=468bp
catCAATCAAGTCATCGTTGGAGTTATATTGTGAAACAATGACATTCTGT
AAATCACGAGCTCTTGTCAACGAAACAAATAATTTGCCACTAGCTCTCTC
ATATGCATCTGCTGGTAGATGTTTGGCACAAGACTTCCTGATATGTGTAC
AAATATCGAAATTTCTGCTCATTGGGCCAAGAAGGCTTTGGTGAACTTTG
GATGCTTGATTCATCACGAATTGTACACAAGCCTCCATGTTGATGTCGCA
TAGCAACATACATGCAGCCAAAGCACCCGCAGAACAGCCACCATATTTGT
TGATGTTGTCAAGGAGTTTTTGCGCATGCGCTTTGAGACATGACACCACT
CCAATGTGATAGATACCAAGAAAGCCAGCACCACAAAACGCGATGTTGGT
CTCCATGACTACAtattgtttttcatATTTTCCAAGTcttcattttagtt
tgtatttcattttcactg
Run BLAST on NCBI

transcript from alignment at sc0000300:172469..173220-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018473 ID=TCONS_00018473|Name=TCONS_00018473|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0000300:172469..173220- (Clytia hemisphaerica)
CATCAATCAAGTCATCGTTGGAGTTATATTGTGAAACAATGACATTCTGT
AAATCACGAGCTCTTGTCAACGAAACAAATAATTTGCCACTAGCTCTCTC
ATATGCATCTGCTGGTAGATGTTTGGCACAAGACTTCCTGATATGTGTAC
AAATATCGAAATTTCTGCTCATTGGGCCAAGAAGGCTTTGGTGAACTTTG
GATGCTTGATTCATCACGAATTGTACACAAGCCTCCATGTTGATGTCGCA
TAGCAACATACATGCAGCCAAAGCACCCGCAGAACAGCCACCATATTTGT
TGATGTTGTCAAGGAGTTTTTGCGCATGCGCTTTGAGACATGACACCACT
CCAATGTGATAGATACCAAGAAAGCCAGCACCACAAAACGCGATGTTGGT
CTCCATGACTACATATTGTTTTTCATATTTTCTTCATTTTAGTTTGTATT
TCATTTTCACTGAAAAAACGAACATTAATTTGTTAGCGTAGGTTCAGGAA
AAACTAAATGCAAAGTTGTTTCTAGATTAGGACCCCAAGGAGAACCCAGA
AATATTTCAAACTGTGCAAGGGGTTCGAGTCAGAGATTTAGATAAGGTCG
AACTAATCTAATTAGTCTAATCAGAAAAGCCTTTATTAAAGCCTGTTAGG
GTTCGAAATGAAAAGAAATTCATTCGAGAGGTCCAGNCATGACTACATAT
TGTTTTTCACATTTTCCAAGTCTTCATTTTAGTTTGTATTTCATTTTCAC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010349XLOC_010349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018473-exon-sc0000300-1575043694:172795..173220TCONS_00018473-exon-sc0000300-1575043694:172795..173220Clytia hemisphaericaexon
TCONS_00018473-exon-sc0000300-1575043694:172469..172510TCONS_00018473-exon-sc0000300-1575043694:172469..172510Clytia hemisphaericaexon
TCONS_00018473-exon-sc0000300-1510915933:172795..173220TCONS_00018473-exon-sc0000300-1510915933:172795..173220Clytia hemisphaericaexon
TCONS_00018473-exon-sc0000300-1510915933:172469..172510TCONS_00018473-exon-sc0000300-1510915933:172469..172510Clytia hemisphaericaexon
TCONS_00018473-exon-sc0000300-1491911889:172795..173220TCONS_00018473-exon-sc0000300-1491911889:172795..173220Clytia hemisphaericaexon
TCONS_00018473-exon-sc0000300-1491911889:172469..172510TCONS_00018473-exon-sc0000300-1491911889:172469..172510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:172469..173220 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.6232	99.3561	29.5365	16.8676	17.9608	18.9866	25.3813	26.3345	130.659	91.0401	161.589	188.573	180.601	177.717	96.0871	93.1498	57.064	74.5466	126.536	124.609	70.4043	75.1914	44.9489	59.5243	49.2137	54.7371	27.3239	41.4446	43.6816	55.641
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002641PNPLA_dom
IPR016035Acyl_Trfase/lysoPLipase
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
biological_process GO:0008152 metabolic process
Blast
[Close]
BLAST of TCONS_00018473 vs. Swiss-Prot (Human)
Match: PLPL2 (Patatin-like phospholipase domain-containing protein 2 OS=Homo sapiens GN=PNPLA2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.304e-30
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = -3 
Query:    5 NIAFCGAGFLGIYHIGVVSCLKAHAQKLLDNINKYGGCSAGALAACMLLCDINM-EACVQFVMNQASKVHQSLLGPMSRNFDICTHIRKSCAKHLPADAYERASGKLFVSLTRARDLQNVIVSQYNSNDDLI 397
            NI+F G GFLG+Y++GV SCL+ HA  L+ N     G SAGAL A  L+  + + EA  +F+   + +  +  LGP+  +F++   IR    K LPAD++E ASG+L +SLTR  D +NVI+S +NS D+LI
Sbjct:    9 NISFAGCGFLGVYYVGVASCLREHAPFLVANATHIYGASAGALTATALVTGVCLGEAGAKFI-EVSKEARKRFLGPLHPSFNLVKIIRSFLLKVLPADSHEHASGRLGISLTRVSDGENVIISHFNSKDELI 139
The following BLAST results are available for this feature:
BLAST of TCONS_00018473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLPL27.304e-3044.70Patatin-like phospholipase domain-containing prote... [more]
back to top