TCONS_00018475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018475
Unique NameTCONS_00018475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1928

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018475 ID=TCONS_00018475|Name=TCONS_00018475|organism=Clytia hemisphaerica|type=transcript|length=1928bp
ATAAttatgaagaagaagaaatctgGGGCAGTAAGATGGACATCCCCGGC
ACTGTAAATTACACACTTTTTATTTGTTCATCATATTGGGGCCATGGGCG
GTTTGGTGGCAAGCACCCTCTAGTTCTCAAATTGGTGTTGGCCACTTAGA
AAGAAGACTAAAAACTTAAGAAGAGAGCgtaaattattgaaaaatagtAT
CCTCCATCTGAGTGAATCGTCAATATCTCCGCCCTCGATTTGATGTTATT
ACATCATTATATATGGCATATTATCTCTTagacaaaaaaatagaaagatt
cAAAATGAGTAGTAAGAAATTATGGAAAGAATTCATTGGCAAATTTTCGG
ATCATTTGACAACAGATAATGTGAAGAAGATGTCATGGAACTTTGAAATA
CCAGATGGTAAACAAGAAAACATGACTAGCTTACAAATGCTTCAATATTT
GGATCATCAAAAGGAAATTACCAGAGATGACATCTCCTTATTGTATGATG
GTATTGAATATGCCAGAAGGCTCGACCTTAAAACGATGTTGGACGATTTC
CAAGCAAGCATGAGAGTGGCACTGGTAGAGGAGAACAAACAAAGAGGGGG
AAGACCACGCCCTAAATCAGATTACGATAACTGCGATTACGATTCATTAA
ATCAAGGCATGTATTCAAACAGTGCAAATAGCATTGCAACGTATGCTTCA
CCCAGACAAGCGGCGGCTTCATTCAACTCAGATGATAATTACCCGATGGT
GCATGAACCACGTGGATATTGTCTTATTATAAACAATACTTTCAATAAAG
ATAACTCTACAATAACTCCTGATGGAAAAATACTGGGATTCCGAGATGGT
TCAGACAAGGATAAAGTATCACTAGAGAACTTATTTAAATGGTTGAAGTT
TAACGTGAAAAGTTACGACAAAGTGAGTAGACAATATATGGAGACGTTAC
TGCAATTATATTCAGATGACGATAAAAATATGTCACACGATTGTTTCGTA
TGTTGCATACTTTCACATGGTTACGAAAAAGGTTTTTATTGTAATGATGG
AATCGGTATGGACTTTTCCGACATGTGGGAATTCTTTATGGGTGATAAAT
GCCCGCAACTGGTCGGGAAACCGAAGTTGTTTTTCATACAAGCGTGTCAA
GGGGAGAGGAAAGCCACAGGTGTAATGTACCGTGATTCACCGCTCATTCC
AAATGCCACAACACACCCTGTACAGGAGGAGAGTAGAGAGTTTGGAACAG
AGGAGGGGATCGTAGAAAGACCGCCTGGCAGCGGTGCGCCACCACCACTT
ATTTACTCGAGAGACGCCGATTTCAGCTCCTTCGTTGCAACCACACCAGG
TACTACTGCGTGGAGAGATAGTGTTGCTGGTTCCTGGTTCATCCAAGAGT
TGATAGAAGTCTTCAAAAAACACGCTGAAACCGAAGCGTTGGCTACGTTA
CGCCAAAAGATTAACCGGGGCATCGCAAGAAAAGCAGCGCTTGTGAAGGC
AGGGGAAGTTGCGAAAATGATGTCAGATGGAGGTCTGCTAACACTCACCA
AAGCTGTTTATTTCAACCCAGGACAATCTTACGAAGCGTGGTGCCATCCC
TTTTAAAATATTCAGTTCTTTAGTAATCTTCTAGCAATTTGAAATATGGT
ATGATATAGTTTATAGAGAAATTTATTCTGTCATCTCATATTTCAATTAA
AAAGAGACTGCTTATCCTTTCTTTCACATTATCGGAGTTTCGGAAAGGTG
CAATCCCAGGCTTTATTAATGTTAATGACTGACGTCAGAGAATACCCTGC
TGTAGGCTGATGCAATTCCCCCTCAGAGGGGGGCTTCTCAAACAATACTT
CATAGAAATCTTTCGTGTTCGAAAACCAGACAATTCCAGGGTATTATCCG
ACGCTATTAGTAAGCATCAAAATGCCCT
Run BLAST on NCBI

protein sequence of TCONS_00018475-protein

>TCONS_00018475-protein ID=TCONS_00018475-protein|Name=TCONS_00018475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MAYYLLDKKIERFKMSSKKLWKEFIGKFSDHLTTDNVKKMSWNFEIPDGK
QENMTSLQMLQYLDHQKEITRDDISLLYDGIEYARRLDLKTMLDDFQASM
RVALVEENKQRGGRPRPKSDYDNCDYDSLNQGMYSNSANSIATYASPRQA
AASFNSDDNYPMVHEPRGYCLIINNTFNKDNSTITPDGKILGFRDGSDKD
KVSLENLFKWLKFNVKSYDKVSRQYMETLLQLYSDDDKNMSHDCFVCCIL
SHGYEKGFYCNDGIGMDFSDMWEFFMGDKCPQLVGKPKLFFIQACQGERK
ATGVMYRDSPLIPNATTHPVQEESREFGTEEGIVERPPGSGAPPPLIYSR
DADFSSFVATTPGTTAWRDSVAGSWFIQELIEVFKKHAETEALATLRQKI
NRGIARKAALVKAGEVAKMMSDGGLLTLTKAVYFNPGQSYEAWCHPF
Run BLAST on NCBI

transcript from alignment at sc0000300:340284..343346-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018475 ID=TCONS_00018475|Name=TCONS_00018475|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at sc0000300:340284..343346- (Clytia hemisphaerica)
ATAATTATGAAGAAGAAGAAATCTGGGGCAGTAAGATGGACATCCCCGGC
ACTGTAAATTACACACTTTTTATTTGTTCATCATATTGGGGCCATGGGCG
GTTTGGTGGCAAGCACCCTCTAGTTCTCAAATTGGTGTTGGCCACTTAGA
AAGAAGACTAAAAACTTAAGAAGAGAGCGTAAATTATTGAAAAATAGTAT
CCTCCATCTGAGTGAATCGTCAATATCTCCGCCCTCGATTTGATGTTATT
ACATCATTATATATGGCATATTATCTCTTAGACAAAAAAATAGAAAGATT
CAAAATGAGTAGTAAGAAATTATGGAAAGAATTCATTGGCAAATTTTCGG
ATCATTTGACAACAGATAATGTGAAGAAGATGTCATGGAACTTTGAAATA
CCAGGTTAGTTTTGTTACTGTTGGTCCTGGGTAATTTGCTTTTACGATTT
GTTTCCATTTAAAAGTCATATATCTAATTTATTGTTTACGCTATCTTTTC
ATAAAACGCTGAGGTTCATATATACTCATGAAAACCCAAGCTTATAATAA
GTGAATTTTGAATAATTAAAAACAGAATACAAACGCTTTGATGAGAAAAG
TGCCAAATTTTTTTTTTCTTCCCAACAAAAATTTACAAGCTTAACCAGCA
TATTTGGGACATAGTTTTGTAATTTCCATTTTAGATGGTAAACAAGAAAA
CATGACTAGCTTACAAATGCTTCAATATTTGGATCATCAAAAGGAAATTA
CCAGAGATGACATCTCCTTATTGTATGATGGTATTGAATATGCCAGAAGG
CTCGACCTTAAAACGATGTTGGACGATTTCCAAGCAAGCATGAGAGTGGC
ACTGGTAGAGGAGAACAAACAAAGAGGGGGAAGACCACGCCCTAAATCAG
ATTACGATAACTGCGATTACGATTCATTAAATCAAGGTAGGAACGAAGAA
CGAAAAACTTTACCATGTAGATACACCTTTTCATAAATGACGTCACGAAC
AACGATTACCTCGTTTTAAAAATATTGCTATGATAATTGATTCCCAGAGG
AGTTCATAAGAAGTTTACTCTACAGGGTGTCCGGAAAAAAAGTATCGAGT
TCGAACATGATTCTGAGTAGAGGGTTGTTGTTGCGTGTGTTTAACAAAGT
GTTAGAAAATATATACCAACACAATAATCGTTTTTACAACAGCCATTATG
ATTTAAAAGAATTAACTTTCTTTACAATTTTCATGACGTTAAAGTTATTG
AGAATTGTTTTTTGTAAAAGTTTTTCATAAAAGATGTCTGCATGACAATT
AATATGACACAGAGAGAAACTTTGATAAACATTGCAAATTTAGTGAAACA
CACACCAGAACTTTCTTTCTATAGAGGTGGTGCGACTCGAGACTTTTTTC
CGGACACCCTGTATTTATAATAGGAACACTTGAACAAAATCAAAGTGTCT
TAATAAAAGTTTTAAAGCCAAATTATTTCTCGTCTACGAAAAATACTGCG
AAGATAATTTTCTTTAGCATTGCTTCGTTTTGAAAACAAAATTTTTAAAA
AAGTATTTCTTATTGACATTGTTTGTAGGCATGTATTCAAACAGTGCAAA
TAGCATTGCAACGTATGCTTCACCCAGACAAGCGGCGGCTTCATTCAACT
CAGATGATAATTACCCGATGGTGCATGAACCACGTGGATATTGTCTTATT
ATAAACAATACTTTCAATAAAGATAACTCTACAATAACTCCTGATGGAAA
AATACTGGGATTCCGAGATGGTTCAGACAAGGATAAAGTATCACTAGAGA
ACTTATTTAAATGGTTGAAGTTTAACGTGAAAAGTTACGACAAAGTGAGT
AGACAATATATGGAGACGTTACTGCAATTATATTCAGATGACGATAAAAA
TATGTCACACGATTGTTTCGTATGTTGCATACTTTCACATGGTTACGAAA
AAGGTTTTTATTGTAATGATGGAATCGGTATGGACTTTTCCGACATGTGG
GAATTCTTTATGGGTGATAAATGCCCGCAACTGGTCGGGAAACCGAAGTT
GTTTTTCATACAAGCGTGTCAAGGGGAGAGGAAAGCCACAGGTGTAATGT
ACCGTGATTCACCGCTCATTCCAAATGCCACAACACACCCTGTACAGGAG
GAGAGTAGAGAGTTTGGAACAGAGGAGGGGATCGTAGAAAGACCGCCTGG
CAGCGGTGCGCCACCACCACTTATTTACTCGAGAGACGCCGATTTCAGCT
CCTTCGTTGCAACCACACCAGGTACAGCTTTGTTGTGTAATCTAATTTTC
TTAAATCAGATGTGTACTTATGATTGTAAGCTTCCTTCTAAAATCCTTTT
ACCCTGTTTGTAAAGGCTCTGTCAACTTTTAGGGAGCCCCTTTTAAACTT
TGATTTCTACCTTCTCATCAATTTTATGTCACATTCCATTTATTTTACCG
TTCATTGTTCAAACTAACTTGTCTCATTTTGAAGGTACTACTGCGTGGAG
AGATAGTGTTGCTGGTTCCTGGTTCATCCAAGAGTTGATAGAAGTCTTCA
AAAAACACGCTGAAACCGAAGCGTTGGCTACGTTACGCCAAAAGATTAAC
CGGGGCATCGCAAGAAAAGCAGCGCTTGTGAAGGCAGGGGAAGTTGCGAA
AATGATGTCAGATGGAGGTCTGCTAACACTCACCAAAGCTGTTTATTTCA
ACCCAGGACAATCTTACGAAGCGTGGTGCCATCCCTTTTAAAATATTCAG
TTCTTTAGTAATCTTCTAGCAATTTGAAATATGGTATGATATAGTTTATA
GAGAAATTTATTCTGTCATCTCATATTTCAATTAAAAAGAGACTGCTTAT
CCTTTCTTTCACATTATCGGAGTTTCGGAAAGGTGCAATCCCAGGCTTTA
TTAATGTTAATGACTGACGTCAGAGAATACCCTGCTGTAGGCTGATGCAA
TTCCCCCTCAGAGGGGGGCTTCTCAAACAATACTTCATAGAAATCTTTCG
TGTTCGAAAACCAGACAATTCCAGGGTATTATCCGACGCTATTAGTAAGC
ATCAAAATGCCCT

Coding sequence (CDS) from alignment at sc0000300:340284..343346-

>TCONS_00018475 ID=TCONS_00018475|Name=TCONS_00018475|organism=Clytia hemisphaerica|type=CDS|length=5376bp|location=Sequence derived from alignment at sc0000300:340284..343346- (Clytia hemisphaerica)
GTACTACTGCGTGGAGAGATAGTGTTGCTGGTTCCTGGTTCATCCAAGAG
TTGATAGAAGTCTTCAAAAAACACGCTGAAACCGAAGCGTTGGCTACGTT
ACGCCAAAAGATTAACCGGGGCATCGCAAGAAAAGCAGCGCTTGTGAAGG
CAGGGGAAGTTGCGAAAATGATGTCAGATGGAGGTCTGCTAACACTCACC
AAAGCTGTTTATTTCAACCCAGGACAATCTTACGAAGCGTGGTGCCATCC
CTTTTAAGCATGTATTCAAACAGTGCAAATAGCATTGCAACGTATGCTTC
ACCCAGACAAGCGGCGGCTTCATTCAACTCAGATGATAATTACCCGATGG
TGCATGAACCACGTGGATATTGTCTTATTATAAACAATACTTTCAATAAA
GATAACTCTACAATAACTCCTGATGGAAAAATACTGGGATTCCGAGATGG
TTCAGACAAGGATAAAGTATCACTAGAGAACTTATTTAAATGGTTGAAGT
TTAACGTGAAAAGTTACGACAAAGTGAGTAGACAATATATGGAGACGTTA
CTGCAATTATATTCAGATGACGATAAAAATATGTCACACGATTGTTTCGT
ATGTTGCATACTTTCACATGGTTACGAAAAAGGTTTTTATTGTAATGATG
GAATCGGTATGGACTTTTCCGACATGTGGGAATTCTTTATGGGTGATAAA
TGCCCGCAACTGGTCGGGAAACCGAAGTTGTTTTTCATACAAGCGTGTCA
AGGGGAGAGGAAAGCCACAGGTGTAATGTACCGTGATTCACCGCTCATTC
CAAATGCCACAACACACCCTGTACAGGAGGAGAGTAGAGAGTTTGGAACA
GAGGAGGGGATCGTAGAAAGACCGCCTGGCAGCGGTGCGCCACCACCACT
TATTTACTCGAGAGACGCCGATTTCAGCTCCTTCGTTGCAACCACACCAG
ATGGTAAACAAGAAAACATGACTAGCTTACAAATGCTTCAATATTTGGAT
CATCAAAAGGAAATTACCAGAGATGACATCTCCTTATTGTATGATGGTAT
TGAATATGCCAGAAGGCTCGACCTTAAAACGATGTTGGACGATTTCCAAG
CAAGCATGAGAGTGGCACTGGTAGAGGAGAACAAACAAAGAGGGGGAAGA
CCACGCCCTAAATCAGATTACGATAACTGCGATTACGATTCATTAAATCA
AGATGGCATATTATCTCTTAGACAAAAAAATAGAAAGATTCAAAATGAGT
AGTAAGAAATTATGGAAAGAATTCATTGGCAAATTTTCGGATCATTTGAC
AACAGATAATGTGAAGAAGATGTCATGGAACTTTGAAATACCAGGTACTA
CTGCGTGGAGAGATAGTGTTGCTGGTTCCTGGTTCATCCAAGAGTTGATA
GAAGTCTTCAAAAAACACGCTGAAACCGAAGCGTTGGCTACGTTACGCCA
AAAGATTAACCGGGGCATCGCAAGAAAAGCAGCGCTTGTGAAGGCAGGGG
AAGTTGCGAAAATGATGTCAGATGGAGGTCTGCTAACACTCACCAAAGCT
GTTTATTTCAACCCAGGACAATCTTACGAAGCGTGGTGCCATCCCTTTTA
AGCATGTATTCAAACAGTGCAAATAGCATTGCAACGTATGCTTCACCCAG
ACAAGCGGCGGCTTCATTCAACTCAGATGATAATTACCCGATGGTGCATG
AACCACGTGGATATTGTCTTATTATAAACAATACTTTCAATAAAGATAAC
TCTACAATAACTCCTGATGGAAAAATACTGGGATTCCGAGATGGTTCAGA
CAAGGATAAAGTATCACTAGAGAACTTATTTAAATGGTTGAAGTTTAACG
TGAAAAGTTACGACAAAGTGAGTAGACAATATATGGAGACGTTACTGCAA
TTATATTCAGATGACGATAAAAATATGTCACACGATTGTTTCGTATGTTG
CATACTTTCACATGGTTACGAAAAAGGTTTTTATTGTAATGATGGAATCG
GTATGGACTTTTCCGACATGTGGGAATTCTTTATGGGTGATAAATGCCCG
CAACTGGTCGGGAAACCGAAGTTGTTTTTCATACAAGCGTGTCAAGGGGA
GAGGAAAGCCACAGGTGTAATGTACCGTGATTCACCGCTCATTCCAAATG
CCACAACACACCCTGTACAGGAGGAGAGTAGAGAGTTTGGAACAGAGGAG
GGGATCGTAGAAAGACCGCCTGGCAGCGGTGCGCCACCACCACTTATTTA
CTCGAGAGACGCCGATTTCAGCTCCTTCGTTGCAACCACACCAGATGGTA
AACAAGAAAACATGACTAGCTTACAAATGCTTCAATATTTGGATCATCAA
AAGGAAATTACCAGAGATGACATCTCCTTATTGTATGATGGTATTGAATA
TGCCAGAAGGCTCGACCTTAAAACGATGTTGGACGATTTCCAAGCAAGCA
TGAGAGTGGCACTGGTAGAGGAGAACAAACAAAGAGGGGGAAGACCACGC
CCTAAATCAGATTACGATAACTGCGATTACGATTCATTAAATCAAGATGG
CATATTATCTCTTAGACAAAAAAATAGAAAGATTCAAAATGAGTAGTAAG
AAATTATGGAAAGAATTCATTGGCAAATTTTCGGATCATTTGACAACAGA
TAATGTGAAGAAGATGTCATGGAACTTTGAAATACCAGGTACTACTGCGT
GGAGAGATAGTGTTGCTGGTTCCTGGTTCATCCAAGAGTTGATAGAAGTC
TTCAAAAAACACGCTGAAACCGAAGCGTTGGCTACGTTACGCCAAAAGAT
TAACCGGGGCATCGCAAGAAAAGCAGCGCTTGTGAAGGCAGGGGAAGTTG
CGAAAATGATGTCAGATGGAGGTCTGCTAACACTCACCAAAGCTGTTTAT
TTCAACCCAGGACAATCTTACGAAGCGTGGTGCCATCCCTTTTAAGCATG
TATTCAAACAGTGCAAATAGCATTGCAACGTATGCTTCACCCAGACAAGC
GGCGGCTTCATTCAACTCAGATGATAATTACCCGATGGTGCATGAACCAC
GTGGATATTGTCTTATTATAAACAATACTTTCAATAAAGATAACTCTACA
ATAACTCCTGATGGAAAAATACTGGGATTCCGAGATGGTTCAGACAAGGA
TAAAGTATCACTAGAGAACTTATTTAAATGGTTGAAGTTTAACGTGAAAA
GTTACGACAAAGTGAGTAGACAATATATGGAGACGTTACTGCAATTATAT
TCAGATGACGATAAAAATATGTCACACGATTGTTTCGTATGTTGCATACT
TTCACATGGTTACGAAAAAGGTTTTTATTGTAATGATGGAATCGGTATGG
ACTTTTCCGACATGTGGGAATTCTTTATGGGTGATAAATGCCCGCAACTG
GTCGGGAAACCGAAGTTGTTTTTCATACAAGCGTGTCAAGGGGAGAGGAA
AGCCACAGGTGTAATGTACCGTGATTCACCGCTCATTCCAAATGCCACAA
CACACCCTGTACAGGAGGAGAGTAGAGAGTTTGGAACAGAGGAGGGGATC
GTAGAAAGACCGCCTGGCAGCGGTGCGCCACCACCACTTATTTACTCGAG
AGACGCCGATTTCAGCTCCTTCGTTGCAACCACACCAGATGGTAAACAAG
AAAACATGACTAGCTTACAAATGCTTCAATATTTGGATCATCAAAAGGAA
ATTACCAGAGATGACATCTCCTTATTGTATGATGGTATTGAATATGCCAG
AAGGCTCGACCTTAAAACGATGTTGGACGATTTCCAAGCAAGCATGAGAG
TGGCACTGGTAGAGGAGAACAAACAAAGAGGGGGAAGACCACGCCCTAAA
TCAGATTACGATAACTGCGATTACGATTCATTAAATCAAGATGGCATATT
ATCTCTTAGACAAAAAAATAGAAAGATTCAAAATGAGTAGTAAGAAATTA
TGGAAAGAATTCATTGGCAAATTTTCGGATCATTTGACAACAGATAATGT
GAAGAAGATGTCATGGAACTTTGAAATACCAGGTACTACTGCGTGGAGAG
ATAGTGTTGCTGGTTCCTGGTTCATCCAAGAGTTGATAGAAGTCTTCAAA
AAACACGCTGAAACCGAAGCGTTGGCTACGTTACGCCAAAAGATTAACCG
GGGCATCGCAAGAAAAGCAGCGCTTGTGAAGGCAGGGGAAGTTGCGAAAA
TGATGTCAGATGGAGGTCTGCTAACACTCACCAAAGCTGTTTATTTCAAC
CCAGGACAATCTTACGAAGCGTGGTGCCATCCCTTTTAAGCATGTATTCA
AACAGTGCAAATAGCATTGCAACGTATGCTTCACCCAGACAAGCGGCGGC
TTCATTCAACTCAGATGATAATTACCCGATGGTGCATGAACCACGTGGAT
ATTGTCTTATTATAAACAATACTTTCAATAAAGATAACTCTACAATAACT
CCTGATGGAAAAATACTGGGATTCCGAGATGGTTCAGACAAGGATAAAGT
ATCACTAGAGAACTTATTTAAATGGTTGAAGTTTAACGTGAAAAGTTACG
ACAAAGTGAGTAGACAATATATGGAGACGTTACTGCAATTATATTCAGAT
GACGATAAAAATATGTCACACGATTGTTTCGTATGTTGCATACTTTCACA
TGGTTACGAAAAAGGTTTTTATTGTAATGATGGAATCGGTATGGACTTTT
CCGACATGTGGGAATTCTTTATGGGTGATAAATGCCCGCAACTGGTCGGG
AAACCGAAGTTGTTTTTCATACAAGCGTGTCAAGGGGAGAGGAAAGCCAC
AGGTGTAATGTACCGTGATTCACCGCTCATTCCAAATGCCACAACACACC
CTGTACAGGAGGAGAGTAGAGAGTTTGGAACAGAGGAGGGGATCGTAGAA
AGACCGCCTGGCAGCGGTGCGCCACCACCACTTATTTACTCGAGAGACGC
CGATTTCAGCTCCTTCGTTGCAACCACACCAGATGGTAAACAAGAAAACA
TGACTAGCTTACAAATGCTTCAATATTTGGATCATCAAAAGGAAATTACC
AGAGATGACATCTCCTTATTGTATGATGGTATTGAATATGCCAGAAGGCT
CGACCTTAAAACGATGTTGGACGATTTCCAAGCAAGCATGAGAGTGGCAC
TGGTAGAGGAGAACAAACAAAGAGGGGGAAGACCACGCCCTAAATCAGAT
TACGATAACTGCGATTACGATTCATTAAATCAAGATGGCATATTATCTCT
TAGACAAAAAAATAGAAAGATTCAAAATGAGTAGTAAGAAATTATGGAAA
GAATTCATTGGCAAATTTTCGGATCATTTGACAACAGATAATGTGAAGAA
GATGTCATGGAACTTTGAAATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010351XLOC_010351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018475-exon-sc0000300-1575043694:342943..343346TCONS_00018475-exon-sc0000300-1575043694:342943..343346Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1575043694:342411..342662TCONS_00018475-exon-sc0000300-1575043694:342411..342662Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1575043694:341076..341768TCONS_00018475-exon-sc0000300-1575043694:341076..341768Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1575043694:340284..340862TCONS_00018475-exon-sc0000300-1575043694:340284..340862Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1510915933:342943..343346TCONS_00018475-exon-sc0000300-1510915933:342943..343346Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1510915933:342411..342662TCONS_00018475-exon-sc0000300-1510915933:342411..342662Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1510915933:341076..341768TCONS_00018475-exon-sc0000300-1510915933:341076..341768Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1510915933:340284..340862TCONS_00018475-exon-sc0000300-1510915933:340284..340862Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1491911889:342943..343346TCONS_00018475-exon-sc0000300-1491911889:342943..343346Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1491911889:342411..342662TCONS_00018475-exon-sc0000300-1491911889:342411..342662Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1491911889:341076..341768TCONS_00018475-exon-sc0000300-1491911889:341076..341768Clytia hemisphaericaexon
TCONS_00018475-exon-sc0000300-1491911889:340284..340862TCONS_00018475-exon-sc0000300-1491911889:340284..340862Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018475-proteinTCONS_00018475-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:340284..343346 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.0214	19.4617	5.98223	3.88654	20.2619	15.7253	12.7099	13.8861	7.63498	9.58641	8.57296	6.419	7.6317	6.7282	7.46518	7.72202	10.7988	8.74996	7.52517	9.11428	5.84669	6.51147	19.3333	18.3083	9.52826	14.753	7.4145	6.01022	15.6456	17.014
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015917Pept_C14A
IPR033139Caspase_cys_AS
IPR002138Pept_C14_p10
IPR001309Pept_C14_p20
IPR001875DED_dom
IPR011029DEATH-like_dom
IPR029030Caspase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0004197cysteine-type endopeptidase activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0042981regulation of apoptotic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0042981 regulation of apoptotic process
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00018475 vs. Swiss-Prot (Human)
Match: CASP8 (Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.306e-32
Identity = 88/266 (33.08%), Postives = 131/266 (49.25%), Query Frame = 2 
Query:  698 SPR-QAAASFNSDDNYPMVHEPRGYCLIINN-TFNKDNSTITPDGKILGFRDGSDKDKVSLENLFKWLKFNVKSYDKVSRQYMETLLQLYS-DDDKNMSHDCFVCCILSHGYEKGFYCNDGIGMDFSDMWEFFMGDKCPQLVGKPKLFFIQACQGERKATGVMYRDSPLIPNATTHPVQEESREFGTEEGIVERPPGSGAPPPLIYSRDADFSSFVATTPGTTAWRDSVAGSWFIQELIEVFKKHA-ETEALATLRQKINRGIARK 1483
            SPR Q + S   D  Y M  +PRGYCLIINN  F K    + P    +  R+G+  D  +L   F+ L F +K +D  + + +  +L++Y   D  NM  DCF+CCILSHG +   Y  DG      ++   F G KCP L GKPK+FFIQACQG+    G+              PV+ +S E    E  +  P     P       +ADF   +AT     ++R+   G+W+IQ L +  ++     + + T+  ++N  ++ K
Sbjct:  211 SPREQDSESQTLDKVYQMKSKPRGYCLIINNHNFAKAREKV-PKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNM--DCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGI--------------PVETDSEEQPYLEMDLSSPQTRYIPD------EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNK 453
The following BLAST results are available for this feature:
BLAST of TCONS_00018475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASP81.306e-3233.08Caspase-8 OS=Homo sapiens GN=CASP8 PE=1 SV=1[more]
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