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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018477 ID=TCONS_00018477|Name=TCONS_00018477|organism=Clytia hemisphaerica|type=transcript|length=1489bp
ATAGGGCCCTTGTTGACAAGGCACCTCTTAATAACACTTAGGAGGTTCTG
TACCGACAAAAGGAGAAAAGAACTGAGCAAAGTTGTCATTTCCAATACAG
AATACTCAAATAATATTTGCTTTTAAAGAATTTACACTTGTTTAGTAAAA
CACTACAGAAAtacatcaaaaataaataaacttgTTATCAAAAAATACTT
CTTTCTTCAACTAactaaaaatttttagaaaaattaaaaaaaatgataaa
aaaattcaatctcTGTTTCAGCTATATGGATTAATATGCCTTTGGCGGTG
AATTCAATTATTAGGCCCGTTTCACACGAGGAAATGGTTTACTGATAATT
AAGCCAAGTGACTAGCCTAATTATTGAATATAGCCGCAAAAAAAGTTAAT
ATCATTGAAAAAGCCGCTCCTTGACAGTTCCCAAGAAAGTTCGACTACGG
ACATTGTCAACTTCATCGAGCGGGTTGCGTCGCACGTTCCCGCTTTCAAT
ATCTCTCTCTTTTTTATGCTTCTTCAAATATTGCTTCACTTCGTCTAAAC
ATTTCCTTTGATCTCTCCTTATCTTTAATTTACGGCATTTTTTACGCTGC
GTTTTCAGGAGCTCCAAACAAATAGCGCGTGCACCGTGGTGGTTGATAGC
ACGACATCGTTTACGTAATTTGCGCATTTGATGACGAAACCATTCGTTGG
CTGGTGGACGTAGCGTGGGCGCTTTTTTCGGGGCTTCAGTAACTTCGTTC
ACCGTATTGGGGCACTTTTTGCGACGACATTGGCAAAACAGTACGATTCC
CACTATAACATTTTGTACTTTATTGCCGTCACATTGCAATGAAACTGTTT
TGTTAACCATTTTGGTTGGATAGCATGTTCTGCATGTCATTATACTTTGT
GAACCATTGAACGCGTTGCTAATACCAGAATTGCATTGTCCATAGCAAGC
CTTGTTGGCAATGTAAGTGGTCTGACAGCCAGGTAATGTTACCGGTTGTT
CAAAACTTAATGTTTGACAATGTTCTTTTTCGATCATATTGTTTTGATAA
TTGGAAGCTTTTCCATTTCCAAAAAGCGTGCAGATTATTGATAGTACAAA
AGTTAGAAAAACTCTACACTCCAtgataaataaaaaagtctctTTGAGCT
GAGGTTAATCGCTACAATGTCTCCACGGAACAAAAttcaaatatcaacaa
aatcttCTTTCATTTGGTCATTACTTTAGAAGTGAATGTTCGAATGCAGA
GTGTCTTTGTGAACTGAATTCCTATGAAAAATGCAGTGCGTTTTATACGC
TTCTGTTTTTTGAGATGAGTGATATGATATGATACaggaaaacctttttt
tatcaAGATCAACAAAATGACATCACTACCATCAAATCTCTCTGACGAAT
AAATCTCAAGTGCTTTTCTGATCTGTTTTTACTTCTGTAGCAAATCAAAT
GATAACAACttcaacaaaacaaagagaaatacACCTCGG Run BLAST on NCBI protein sequence of Cerberus family protein >TCONS_00018477-protein ID=TCONS_00018477-protein|Name=Cerberus family protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MECRVFLTFVLSIICTLFGNGKASNYQNNMIEKEHCQTLSFEQPVTLPGC
QTTYIANKACYGQCNSGISNAFNGSQSIMTCRTCYPTKMVNKTVSLQCDG
NKVQNVIVGIVLFCQCRRKKCPNTVNEVTEAPKKAPTLRPPANEWFRHQM
RKLRKRCRAINHHGARAICLELLKTQRKKCRKLKIRRDQRKCLDEVKQYL
KKHKKERDIESGNVRRNPLDEVDNVRSRTFLGTVKERLFQ Run BLAST on NCBI transcript from alignment at sc0000300:74855..76343 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018477 ID=TCONS_00018477|Name=TCONS_00018477|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at sc0000300:74855..76343 (Clytia hemisphaerica)
CCGAGGTgtatttctctttgttttgttgaaGTTGTTATCATTTGATTTGC
TACAGAAGTAAAAACAGATCAGAAAAGCACTTGAGATTTATTCGTCAGAG
AGATTTGATGGTAGTGATGTCATTTTGTTGATCTtgataaaaaaaggttt
tcctGTATCATATCATATCACTCATCTCAAAAAACAGAAGCGTATAAAAC
GCACTGCATTTTTCATAGGAATTCAGTTCACAAAGACACTCTGCATTCGA
ACATTCACTTCTAAAGTAATGACCAAATGAAAGaagattttgttgatatt
tgaaTTTTGTTCCGTGGAGACATTGTAGCGATTAACCTCAGCTCAAagag
acttttttatttatcaTGGAGTGTAGAGTTTTTCTAACTTTTGTACTATC
AATAATCTGCACGCTTTTTGGAAATGGAAAAGCTTCCAATTATCAAAACA
ATATGATCGAAAAAGAACATTGTCAAACATTAAGTTTTGAACAACCGGTA
ACATTACCTGGCTGTCAGACCACTTACATTGCCAACAAGGCTTGCTATGG
ACAATGCAATTCTGGTATTAGCAACGCGTTCAATGGTTCACAAAGTATAA
TGACATGCAGAACATGCTATCCAACCAAAATGGTTAACAAAACAGTTTCA
TTGCAATGTGACGGCAATAAAGTACAAAATGTTATAGTGGGAATCGTACT
GTTTTGCCAATGTCGTCGCAAAAAGTGCCCCAATACGGTGAACGAAGTTA
CTGAAGCCCCGAAAAAAGCGCCCACGCTACGTCCACCAGCCAACGAATGG
TTTCGTCATCAAATGCGCAAATTACGTAAACGATGTCGTGCTATCAACCA
CCACGGTGCACGCGCTATTTGTTTGGAGCTCCTGAAAACGCAGCGTAAAA
AATGCCGTAAATTAAAGATAAGGAGAGATCAAAGGAAATGTTTAGACGAA
GTGAAGCAATATTTGAAGAAGCATAAAAAAGAGAGAGATATTGAAAGCGG
GAACGTGCGACGCAACCCGCTCGATGAAGTTGACAATGTCCGTAGTCGAA
CTTTCTTGGGAACTGTCAAGGAGCGGCTTTTTCAATGATATTAACTTTTT
TTGCGGCTATATTCAATAATTAGGCTAGTCACTTGGCTTAATTATCAGTA
AACCATTTCCTCGTGTGAAACGGGCCTAATAATTGAATTCACCGCCAAAG
GCATATTAATCCATATAGCTGAAACAgagattgaatttttttatcatttt
ttttaatttttctaaaaatttttagtTAGTTGAAGAAAGAAGTATTTTTT
GATAAcaagtttatttatttttgatgtaTTTCTGTAGTGTTTTACTAAAC
AAGTGTAAATTCTTTAAAAGCAAATATTATTTGAGTATTCTGTATTGGAA
ATGACAACTTTGCTCAGTTCTTTTCTCCTTTTGTCGGTACAGAACCTCCT
AAGTGTTATTAAGAGGTGCCTTGTCAACAAGGGCCCTAT Coding sequence (CDS) from alignment at sc0000300:74855..76343 >TCONS_00018477 ID=TCONS_00018477|Name=TCONS_00018477|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at sc0000300:74855..76343 (Clytia hemisphaerica)
aTGGAGTGTAGAGTTTTTCTAACTTTTGTACTATCAATAATCTGCACGCT
TTTTGGAAATGGAAAAGCTTCCAATTATCAAAACAATATGATCGAAAAAG
AACATTGTCAAACATTAAGTTTTGAACAACCGGTAACATTACCTGGCTGT
CAGACCACTTACATTGCCAACAAGGCTTGCTATGGACAATGCAATTCTGG
TATTAGCAACGCGTTCAATGGTTCACAAAGTATAATGACATGCAGAACAT
GCTATCCAACCAAAATGGTTAACAAAACAGTTTCATTGCAATGTGACGGC
AATAAAGTACAAAATGTTATAGTGGGAATCGTACTGTTTTGCCAATGTCG
TCGCAAAAAGTGCCCCAATACGGTGAACGAAGTTACTGAAGCCCCGAAAA
AAGCGCCCACGCTACGTCCACCAGCCAACGAATGGTTTCGTCATCAAATG
CGCAAATTACGTAAACGATGTCGTGCTATCAACCACCACGGTGCACGCGC
TATTTGTTTGGAGCTCCTGAAAACGCAGCGTAAAAAATGCCGTAAATTAA
AGATAAGGAGAGATCAAAGGAAATGTTTAGACGAAGTGAAGCAATATTTG
AAGAAGCATAAAAAAGAGAGAGATATTGAAAGCGGGAACGTGCGACGCAA
CCCGCTCGATGAAGTTGACAATGTCCGTAGTCGAACTTTCTTGGGAACTG
TCAAGGAGCGGCTTTTTCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018477-exon-sc0000300-1491911889:74855..76343 | TCONS_00018477-exon-sc0000300-1491911889:74855..76343 | Clytia hemisphaerica | exon |
| TCONS_00018477-exon-sc0000300-1510915933:74855..76343 | TCONS_00018477-exon-sc0000300-1510915933:74855..76343 | Clytia hemisphaerica | exon |
| TCONS_00018477-exon-sc0000300-1575043694:74855..76343 | TCONS_00018477-exon-sc0000300-1575043694:74855..76343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000300 | supercontig | sc0000300:74855..76343 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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