TCONS_00018493 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018493
Unique Name	TCONS_00018493
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1823

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000301:101003..107458+

transcript sequence

>TCONS_00018493 ID=TCONS_00018493|Name=TCONS_00018493|organism=Clytia hemisphaerica|type=transcript|length=1823bp
cgttttAGTTCAATATTGACAAGGAGGCAGGTGACCGCAAGATTTACCAT
CGATACTGTTTAGAACGAGCAGCGACTTCTATAGCACACATCTTCACCAC
TGTATCACAAATTACTGCTGATGAAGCTGAACATCTGTTGGGAAGGAAAC
CTGATATTGTGACTCCCAATGGCCTGAATATTGTCAAATACACagCTCTT
CACGAGTTTCAAAATCTCCACGCCAAGTCAAAGGAAAAGATTCACGATTT
TGTACGAGGACACTTTTATGGaaatttggacTTTGATCTAGACAAGACGT
TATATTTCTTCACGGCCGGCAGaTACGAGTTTCAGAACAAAGGTGCTGAT
GTGTACTTGGAGTCCTTAGCAAGACTCAACTACTTGCTTAAGGCATCGAA
TAGTGACGTTACAGTGGTTGCATTCTTAATTTTCCCCGCAAAAACCAATA
ACTACAATGTAGAAGCTTTGCGTGGACAAGCTCATGTTAAACAATTGAGA
ACCACAGTCAATGAACTTCACGACATCATCGGAAAACGAATTTTCGACTC
TGCCATGAGCGGTCGACTGCCAGATACTGAAGAATTATTGAAGCAAACTG
ATCTTACTGCCTTGAAGCGTTGTCTCCTTGCCACCcagAACGGCCGCATG
GCGCCTGTAGTGACGCATAACATGATTGACGACCACCTGGACCCTATTCT
GAACTGTGTTCGCAAAATGCagctttttaatttgaagactgATCGAGTGA
AGGTTATCTTCTATCCAGAATTCTTGTCGCGCACCAATCCTCTTTTCCCA
ATGGATTATGAAGAATTTGTCCGCGGATGTCACTTGGGAGTTTTCCCTTC
CTATTATGAACCATGGGGCTATACGCCAGCGGAATGTACAGTGATGGGTG
TACCAAATGTATCGACCAATCTTTCTGGTTTCGGACGTTTCATGGCTGAG
CACATCGATTACCCTGAATTCTATGGAATTTACGTCATCGACCGTCGCTT
CAAGAACGCGAAAGAATCGATCGAACAACTTTCTGATCATATGAATGATT
TTTGTAATCTTTCAAGACGACAAAGAATTATTCTCCGAAATCGAACTGAA
AGACTGAGTGAATTACTGGACTGGAAAAACCTCGGAGTGTATTACAAAAG
AGCTAGAGCAATGGCAATCAAACAGACACACCCTGAAAAGGCACCAAGAT
TGAGTTTGAGAACTAATCAATTGAATCTTCGCTTTCCACGACCGCCCTCC
GCGCCTGGTTCACCGGCGCTTTCACGCCAAGTTTccgatgatgaagatga
agaagaccTTGAGTTTAGATGTGCTCCGGACCCTGAAGACGCCGTTGTCT
TTCGTGCCAGGTCCGGTAGTGAAAGCAGTACCACGAATTAAAGAATTCTA
GTTGTTTTTTATCACGAATGCAGCCTTAAAAAGGAGAATTTAAtttcttt
atgttttttttatatataatttttcattatgATACTTTTCTTGAAGTGTC
AAATTGAATTCTGCATCTTCTTAGCTTCAGAGCAGAACAATATCTATAAG
CGACTGGAATGGATTGAGATTTATGACATTATGATATATCTGAACTCCGA
GTTTGAGACATTGTTGCCACTCAAAGTGATTTGATCTACGATATCCGTTT
GTTTGTTTGGTTTGTTTCATTGTTGTATATTTTGCTTTTTCGTTACGTTT
TGACAGCTGAATATTTTTTATAGAATTATTATTGTAACACTTTTTTACAT
ACAGAATTATTAGAATTAGGAGTCTTTTTgaactttagaaaaaatatgAG
TATACAAATTAGTTAAAATCTGC

Run BLAST on NCBI

transcript from alignment at sc0000301:101003..107458+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018493 ID=TCONS_00018493|Name=TCONS_00018493|organism=Clytia hemisphaerica|type=transcript|length=6456bp|location=Sequence derived from alignment at sc0000301:101003..107458+ (Clytia hemisphaerica)
cgttttAGTTCAATATTGACAAGGTattttttttacgattttgaaattct
tttgctttcttttagttcgattaaaaaatgtCTCTTGTAAAATCATGCTA
AACACTTGATTTCACCTGAAAGTGGTCCTCAAAAGTGGTTTCAATTTTAT
AATAGAtcactgaaaaatgaaaataaatattaatattGATCGTTATTGCC
TTTCCAATTGACTAGGAGGCAGGTGACCGCAAGATTTACCATCGATACTG
TTTAGAACGAGCAGCGACTTCTATAGCACACATCTTCACCACTGTATCAC
AAATTACTGCTGATGAAGCTGAACATCTGTTGGGAAGGAAACCTGGTAGA
GATTAATCAATATTTCTATACTTTCAGTATTAGTCTACTTCTACCCAGAC
ATTTCGGATACACAGTTAATTTTTTGACTGGAAGATTCACTCTAAAGATa
actattttggactttttcgaaTGATTTTAAGGTTTTCGTAATGTATATCA
ACTATGATCTCTGCAGTTTGTAACCTCACTCGTGATTCGATATTTTACTT
TAGATATTGTGACTCCCAATGGCCTGAATATTGTCAAATACACGTGAGTA
TGATTTATtatttaattcgtttttttcatttcaaattatcTTCTCTGGAC
AAGATTGGCATTTTacgttctatttatttttcatttcagagCTCTTCACG
AGTTTCAAAATCTCCACGCCAAGTCAAAGGAAAAGATTCACGATTTTGTA
CGAGGACACTTTTATGGGTAAATTAATTGCACATATCAATATCTCATAGC
GTCATCCCCCCTGACACCCAAAAAATGCAAATGAAAACCGGGAGCTAAAA
TGCAgccaaatatttggggggacctgatatgtttggggggGGGCTGGAAT
TTCAATGGCAAAGCTGGAGGCTGACTATTTCTtctattgtttttctttat
ggaaccatgtttttattcaaaaatccTCCATTTTACAGTCTATTGATTCT
gtttgttttcacttgaaaaACAAAGGGCGGAAAAAGATGCCATTTGATGA
TTACTAGATATGGcagtttttggccaaaaaagagagaaaacacCCCAAAA
TTTTTGTGCTCGCTTCGGTCGCGTTAAAAGAtttcgaaaatggcaaaaaa
atagAGATGTGATTTTCCTAAAAACGATATTAAATCAacaaacacaggaa
aaaatcctaATCGATTCCCAAATTTGGGAATTTCAATTAACGTATCTGGA
AATTTTCACATcatgtttactttgtaatttttagtTTGGGATTCTGAGAC
GTTCAAGATATTCCATTTCATGATTGGCATTTGAGTTTAAGTTAAATtag
gggatgagctggagtttttataagatacttcactaattggtcatttgaag
tgatatgacgcgttctttagaaaaaataataaaattgttttattactggt
taacgaccaaccaaatcaaataagagcttgtaaaaactccagcttgtccc
taaATTAGACATGCCTTGGgaaaaccaaaatcaaaatgtggaaaacttat
ATAACAAACTTAAAGCTAAAACAACCAAATCTAGACTTtgttataaaatc
aaaaacttgGTGCTGGAAAACTCAAAATTAGATAAGTTTGGGATTcacaa
ttattttttcattatttcaccTAGAAAGTTTAGATTGGGAAGTATCGATT
TCACATTTGTGAAAATCAATTTCCCAAACTTGTACCACGCATGCGTAAGA
AAAACCACAAGTAGAAATTGGGTCAAAACTGTTCAGATTGTATTCAAATC
ATAACTTTATAAGGGTGTattcgatcagtgtgtaacacaaaGGTGAGGCG
CCCCGCAAGGGCGGCCTCGttcgttcgcaatggacttgcgtcgcaagggc
tcagtggaATCGTCAGTCGCCGTGCGGCCGTTCAATCGGTACCACGTCGT
TGTTCCGCTGTTATGAcaaagtgccgggattctcaaagtagcgcagGCAC
ATGACAGAACGAATGGGAGCTATCGAGCCAAAGCTCACgaatgatcgaat
acatttaaGAATTTAGCAAATACAAATCATATTTGGGTATTTGAGTTTCC
CAATTGTGTTATACAGAATCACAAACTCAATCTTTGTGTTTAGCATTGTT
AATAGCCATTTTCCGTAATGTGAAATAAACTTTAACAAGTTTGGGAAACC
AAGTTACCCAACCCTATTCCTGATCTGGTTTTAAGCTTTGTGATATTGGA
ATTCACAACCTACGTACAAGCTTTGGGAAATACATCATTTTCCGGATCCG
GAAATACGTATTTCCCAAACATtgggatttgaagattttttcctgtgaaa
tattttatactAGATATAGAACTGGGGGCtgctaaaaaaacttttaatat
ttGGGGGAGGGGAACtatttttttgcctgggacctagacCTGGACTGGCC
CTATGTTATCTCGTTTTCTTTATCATTTACATAATTcgcttttatttttt
atatcaaatagtatttatcagtcaaaatcatttttcttttttagaaattt
ggacTTTGATCTAGACAAGACGTTATATTTCTTCACGGCCGGCAGGTAAT
TTCACAAACTGAAAATCCATGTATTCAGCTCTTGTCTTTGTCAACCGAAT
CTAAACCTAAGATATTATCTTGATCTCTATTATTGTCATTTCgtcttttt
cttcctttttagaTACGAGTTTCAGAACAAAGGTGCTGATGTGTACTTGG
AGTCCTTAGCAAGACTCAACTACTTGCTTAAGGTTAGCTATTCATTTGTA
CGAGATGACTTactttctacttttttcataatAGCCAGATACAATTTGAC
ATTGTTATTCATTCCACTTTAAAAGGATGTATTGTCATATTGTAGATTTA
GAATTTAGTTTCGCTTGAAAATGTTGAAGGTATTTTAACATGAATGAATT
CTCTCTGCAGGCATCGAATAGTGACGTTACAGTGGTTGCATTCTTAATTT
TCCCCGCAAAAACCAATAACTACAATGTAGAAGCTTTGCGTGGACAAGCT
CATGTTAAACAATTGAGGTTTGAAATACTTTCGTTCTCTGTGACTTTTGT
ATTCATTTTACAAGTGCTTcttctcaaaacttttttctctgactaatttt
gttattttcaatttttacagAACCACAGTCAATGAACTTCACGACATCAT
CGGAAAACGAATTTTCGACTCTGCCATGAGGTaaagatttttgataattt
gttGCAAGATACAAAATGAGATTGAAAAACGTTGCTCATGCACGCCTCCT
TAACTTCATTTTGCAGTTGTATTTGCAGGGAATAACGATAACTCATATCG
ATTGTATATTAATACCTTTGACCTCACCTAAAACCTTTCATTTACGGTAA
ATACTTTTTATgcattttaagtttgaaaagCGTCGGCTCCACCAACGGAT
GAGTTCCTTTTcccaattctttttttatttaacaaATATCTTTTAAGATC
GATTTGGTTGTTTTTAACATTTCGTTTTCGGTGATGCATTAGTCTTCATT
AATGGATCTTTTTCATTGTCTGAATATTTCAGCGGTCGACTGCCAGATAC
TGAAGAATTATTGAAGCAAACTGATCTTACTGCCTTGAAGCGTTGTCTCC
TTGCCACCcaggtaaaaaaataattccttTGATTGTCGACATCTTAATAT
TTTTACTTGTGGGGTTTGATATCGGAGTAGAGCTTACGTACTCCAAAATG
GACTTCTTAAAGATGGACAGTTTTCCTAATTCTGACGTTTGTATCATTTA
GATGAGAATAATGATTTATAATGATTTCTACTAGAACGGCCGCATGGCGC
CTGTAGTGACGCATAACATGATTGACGACCACCTGGACCCTATTCTGAAC
TGTGTTCGCAAAATGCagctttttaatttgaagactgATCGAGTGAAGGT
tcgtattttttttctaaaagggTTCATCAATGGtattctttttttacatt
aaCACCATCGTTTAGATATTCGTGGTTAAATTTATTACCTGAATTTTTGT
CTCTATAGGTTATCTTCTATCCAGAATTCTTGTCGCGCACCAATCCTCTT
TTCCCAATGGATTATGAAGAATTTGTCCGCGGATGTCACTTGGGAGTTTT
CCCTTCCTATTATGAACCATGGGGCTATACGCCAGGTTTGTTGATCCAAA
GCTCGTAATTCAAATCCTAGTGTTCTAGATTCTTTGGTAGAGTTTCTGAC
CCTTGATCGTCATGATCAGTTGAATCATTTTGGGTTTTTTAATCACTTCT
ATAAATGCTTTTACGTTTCTATTCCGTCACATTTCTAATATTattgattt
tctcgagattagctCATTcgatctttttgattttttttgctcgaagatgc
ataactataaaccctcaaatgtgacggagccagggggggggtcggtatta
aaatctcagacataatgacgtttactacggtggtggtgtgacgaaaaatc
taACTAAATTTAACTACCCAGGTGGAGTGCGATGGTTTGAgtcatttttc
tgatagtgtagCAGAGTGTAGCGTTGCAGAGTGAAGTGTTTGTTGAAAGG
AACAGTTTTTAAAGGTCTTATTTAATAACTCCGATAACTTCGATAAAAAA
CTGATGAATGTAAAGTGTAGAAAATAATCTTTCTAATATTTCTTCTTCTA
GTCACTTAATCACttgaaaagtgaaataaaaaagttcttttttatcACTT
CTGGTCACTCTTCCTTCCGTGATTTCTTAGCTTTTTATCATTTCTTTCGA
TTCTCGATATTTAGTATATCTAGTAGGTATGCTTTCATTATAATTTCCAA
actattttctcaaaaatggttaATTTAACTATCAGTTAAGTCCATAAAGG
TATCGCTTTTTGTATTAAATATCAATTGATTTTACTTACAGCGGAATGTA
CAGTGATGGGTGTACCAAATGTATCGACCAATCTTTCTGGTTTCGGACGT
TTCATGGCTGAGCACATCGATTACCCTGAATTCTATGGAATTTACGTCAT
CGACCGTCGCTTCAAGAACGCGAAAGAATCGATCGAACAACTTTCTGATG
TATGGTTGATTAttgttttttagttttctcTAAAACTTGAGATTCGTGGC
TCTTGTTTTAATCGTttgtcaaaatgtttaattaaaTACCCGTTTGTCAA
ATCTCAAAGAACCGAATGAAATTTCTTACCGAATGTTGATAAGGTTCCAT
CGATCTTTGTTTTAGCATATGAATGATTTTTGTAATCTTTCAAGACGACA
AAGAATTATTCTCCGAAATCGAACTGAAAGACTGAGTGAATTACTGGACT
GGAAAAACCTCGGAGTGGTGAGATATttatgataaaatatattttttttg
ttttgtagaGGGTAAAAGAGAATTTCTAAAACTTTTGTTACAGGGTAAAA
TAATAATAACGTTTTATAATGtgtgtgaaaaaaaagaaacaaaacgaTCT
AAAGAAAACCAACACAGTGCTTTTCGGTTACCTTGAAAAAAATCCCCCAC
GCATAAGTAAGGTTAGTTAATAACGAAACAGTAAAACAAACAATACTTGA
GGAATACAAGAGAGCTTCTCAGGCTTTTTAATGACATTTTCTTCTTGTTT
CACATACAGTATTACAAAAGAGCTAGAGCAATGGCAATCAAACAGACACA
CCCTGAAAAGGCACCAAGATTGAGTTTGAGAACTAATCAATTGGTacgtt
ttttaatgaatttctgtATAGAAAAGACTTGGTACATCTGCCAGggtaaa
taatgaaaataaataatcaAATGCAaattcatgtttttattatgaTGCAT
TTTCAGAATCTTCGCTTTCCACGACCGCCCTCCGCGCCTGGTTCACCGGC
GCTTTCACGCCAAGTTTccgatgatgaagatgaagaagaccTTGAGTTTA
GATGTGCTCCGGACCCTGAAGACGCCGTTGTCTTTCGTGCCAGGTCCGGT
AGTGAAAGCAGTACCACGAATTAAAGAATTCTAGTTGTTTTTTATCACGA
ATGCAGCCTTAAAAAGGAGAATTTAAtttctttatgttttttttatatat
aatttttcattatgATACTTTTCTTGAAGTGTCAAATTGAATTCTGCATC
TTCTTAGCTTCAGAGCAGAACAATATCTATAAGCGACTGGAATGGATTGA
GATTTATGACATTATGATATATCTGAACTCCGAGTTTGAGACATTGTTGC
CACTCAAAGTGATTTGATCTACGATATCCGTTTGTTTGTTTGGTTTGTTT
CATTGTTGTATATTTTGCTTTTTCGTTACGTTTTGACAGCTGAATATTTT
TTATAGAATTATTATTGTAACACTTTTTTACATACAGAATTATTAGAATT
AGGAGTCTTTTTgaactttagaaaaaatatgAGTATACAAATTAGTTAAA
ATCTGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010368	XLOC_010368	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000301	supercontig	sc0000301:101003..107458 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9667	11.3508	3.77456	1.49464	2.7072	3.32899	5.24157	7.77087	9.51894	8.62747	8.85245	4.00799	6.79624	7.37645	12.5787	10.2826	15.9016	12.1829	3.57576	5.66248	4.45367	5.01213	11.1099	9.68361	5.25972	2.8888	4.75452	6.38784	9.64333	7.08019

Blast

[Close]

BLAST of TCONS_00018493 vs. Swiss-Prot (Human)
Match: GYS1 (Glycogen [starch] synthase, muscle OS=Homo sapiens GN=GYS1 PE=1 SV=2)

HSP 1 Score: 568.926 bits (1465), Expect = 0.000e+0
Identity = 278/449 (61.92%), Postives = 343/449 (76.39%), Query Frame = 3

Query:    9 FNIDKEAGDRKIYHRYCLERAATSIAHIFTTVSQITADEAEHLLGRKPDIVTPNGLNIVKYTALHEFQNLHAKSKEKIHDFVRGHFYGNLDFDLDKTLYFFTAGRYEFQNKGADVYLESLARLNYLLKASNSDVTVVAFLIFPAKTNNYNVEALRGQAHVKQLRTTVNELHDIIGKRIFDSAMSGRLPDTEELLKQTDLTALKRCLLATQNGRMAPVVTHNMIDDHLDPILNCVRKMQLFNLKTDRVKVIFYPEFLSRTNPLFPMDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPNVSTNLSGFGRFMAEHIDYPEFYGIYVIDRRFKNAKESIEQLSDHMNDFCNLSRRQRIILRNRTERLSELLDWKNLGVYYKRARAMAIKQTHPEKAPRLSLRTNQLN----LRFPRPPSAPGSPALSRQVSDDEDEEDLEFRCAPDPEDA 1343
            FN+DKEAG+R+IYHRYC+ERAA   AH+FTTVSQITA EA+HLL RKPDIVTPNGLN+ K++A+HEFQNLHA+SK +I +FVRGHFYG+LDF+LDKTLYFF AGRYEF NKGADV+LE+LARLNYLL+ + S+ TVVAF I PA+TNN+NVE L+GQA  KQL  T N + +  G+++++S + G LPD  ++L + D T +KR + ATQ     PV THNM+DD  DPIL  +R++ LFN   DRVKVIF+PEFLS T+PL P+DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG+P++STNLSGFG FM EHI  P  YGIY++DRRF++  +S  QL+  +  FC  SRRQRII RNRTERLS+LLDWK LG YY  AR MA+ +  PE     +   N+ +     R+PRP S P SP+LSR  S  + E++ + R  P  ED 
Sbjct:  227 FNVDKEAGERQIYHRYCMERAAAHCAHVFTTVSQITAIEAQHLLKRKPDIVTPNGLNVKKFSAMHEFQNLHAQSKARIQEFVRGHFYGHLDFNLDKTLYFFIAGRYEFSNKGADVFLEALARLNYLLRVNGSEQTVVAFFIMPARTNNFNVETLKGQAVRKQLWDTANTVKEKFGRKLYESLLVGSLPDMNKMLDKEDFTMMKRAIFATQRQSFPPVCTHNMLDDSSDPILTTIRRIGLFNSSADRVKVIFHPEFLSSTSPLLPVDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSISTNLSGFGCFMEEHIADPSAYGIYILDRRFRSLDDSCSQLTSFLYSFCQQSRRQRIIQRNRTERLSDLLDWKYLGRYYMSARHMALSKAFPE---HFTYEPNEADAAQGYRYPRPASVPPSPSLSRHSSPHQSEDEEDPRNGPLEEDG 672

The following BLAST results are available for this feature:

BLAST of TCONS_00018493 vs. Swiss-Prot (Human)

BLAST of TCONS_00018493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GYS1	0.000e+0	61.92	Glycogen [starch] synthase, muscle OS=Homo sapiens...	[more]

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TCONS_00018493 (transcript) - C. hemisphaerica