TCONS_00018497 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018497
Unique Name	TCONS_00018497
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1076

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000301:148221..150086+
coding sequence from alignment at sc0000301:148221..150086+

transcript sequence

>TCONS_00018497 ID=TCONS_00018497|Name=TCONS_00018497|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TGTTACTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAA
TGACGTTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTT
TTGGATTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCT
AGCTCCCGTTGATCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACAC
AAGGTGTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAA
AGTGCTGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTA
TGCAGAAACCTGCCGTtgcgaaaaaaacttcaaagcaGTCTATCGAAATC
ACATGCCGTACTTCGGAATAGAAAACGGGGAACAAATCGGATTACTGAAG
AACGTTGTAACCGAAGCAACCAATCTCTGTTGTGGAAATTGTTCGAATGG
GCATGGGACCACAAATATCATCTGGGAAAGTCCCATGACGAGTGTCAGCG
AGTTAAATGATGCCATTTTTGATGATACCGACTTCGTGTTGCCAATAGAA
ACGGATAAAATAAACACATACTACAAAAGTAGACCGTTTGTCGGGATTTT
GGATAGCCCAGGAGTTTCCGTATTTTCGCTGAAAGTTGAATATTTGAATT
TGACGAATAATATGATTTTGAATGGAGTGTTGATTTTGTGGTCTTTTGTG
GTGATTGTTGCTTTAATAGTGATGGCTCTTGGATTGATCATGTGGATTGT
CCAATGTCATCCACTTCAACTGAACCGAACGAATCAAGAAGCCTTCCCTG
ATACTTTTTCCCATGGCGCTGGCGCTGGACTTTGGTGGGCTTTCAATACA
GTTCTCCGTATTGGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCG
CATTTTTTCTATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACAT
TAATTGCCGGTGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACT
GAAGGGAGCATCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGA
TCAATTGGTCATCAAACGGATGGCTG

Run BLAST on NCBI

protein sequence of TCONS_00018497-protein

>TCONS_00018497-protein ID=TCONS_00018497-protein|Name=TCONS_00018497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
VTGPNITIYDKFSFTEMTLNWSTLSYADSQGTVLDYNIIYYPVRRNGIDL
APVDQDVTSLWFEFPTQGVELNNLEPFVTYAFQSAAQTFAGPGTFSKPFY
AETCRCEKNFKAVYRNHMPYFGIENGEQIGLLKNVVTEATNLCCGNCSNG
HGTTNIIWESPMTSVSELNDAIFDDTDFVLPIETDKINTYYKSRPFVGIL
DSPGVSVFSLKVEYLNLTNNMILNGVLILWSFVVIVALIVMALGLIMWIV
QCHPLQLNRTNQEAFPDTFSHGAGAGLWWAFNTVLRIGYGDIVATGKLGR
IFSIPIIAVGIAISATLIAGVSSILLAYSVQKTEGSIFSKKVVAMNESYD
QLVIKRMA

Run BLAST on NCBI

transcript from alignment at sc0000301:148221..150086+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018497 ID=TCONS_00018497|Name=TCONS_00018497|organism=Clytia hemisphaerica|type=transcript|length=1866bp|location=Sequence derived from alignment at sc0000301:148221..150086+ (Clytia hemisphaerica)
TGTTACTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAA
TGACGTTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTT
TTGGATTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCT
AGCTCCCGTTGATCAGGTAAAGGTCATTTTTTGTGACGGTGGCAAATTGT
TGTTCTACGGATCAAACTCAACATGAAATGGTAGCAATAATGACAAATTT
ATAAAAGCAAGATTATAACAAGATAATAATATAGGGTAATATTAGGGTCA
GGTATCAAATTGCAACCTCAGAAGGTAGGAATTTTAGTGATGTGAGTTAT
GTTCTCATTTTCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACACAA
GGTGTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAAAG
TGCTGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTATG
CAGGTAATTTTTTCTACAATAGCTATTCCAATCAAATTTAAACAAGAACT
CGGAGTTGGAACTTCAAAGATCGAAATTCTCTTTGCCCAAAATAAAAAAG
GCTGTTATAGACaatgataaaatattggaaTGTTTTTTAATGAACTTTCT
CTCTCAAAATTACAAGGGTCGGCTTGTCGAAAATAGGCCTATTTTGCGCG
CCTTTTATTTTCGCGCACGTATTCTACGCGAAAATTAAAGGGGTGCGAAA
ATTATGAAACCTTCCTTTTTGATTTTCGTTTATTTATGTTTTGCTTGctc
atttctaaattttgccAGAAACCTGCCGTtgcgaaaaaaacttcaaagca
GTCTATCGAAATCACATGCCGTACTTCGGAATAGAAAACGGGGAACAAAT
CGGATTACTGAAGAACGTTGTAACCGAAGCAACCAATCTCTGTTGTGGAA
ATTGTTCGAATGGGCATGGGACCACAAATATCATCTGGGAAAGTCCCATG
ACGAGTGTCAGCGAGTTAAATGATGCCATTTTTGATGATACCGACTTCGT
GTTGCCAATAGAAACGGATAAAATAAACACATACTACAAAAGTAGACCGT
TTGTCGGGATTTTGGATAGCCCAGGAGTTTCCGTATTTTCGCTGAAAGTT
GAATATTTGAATTTGACGAATAATATGATTTTGAATGGAGTGTTGATTTT
GTGGTCTTTTGTGGTGATTGTTGCTTTAATAGTGATGGCTCTTGGATTGA
TCATGTGGATTGTCGTAAGtcgaagtttttgaaaatgtcctCGTTCTTTG
AATTATGTATGATGAGATACTTATTAAATTACTCTCATTGAGCCTGCTTA
AACCTGAAATCATTTCATTTTCTCTCTTCGTAGCAATGTCATCCACTTCA
ACTGAACCGAACGAATCAAGAAGCCTTCCCTGATACTTTTTCCCATGGCG
CTGGCGCTGGACTTTGGTGGGCTTTCAATACAGTTCTCCGTATTGGGCAA
GTCTTTAAATTACGCTTTTAAAGCCATTTCAAATAAGACGTTTACAAGAA
GTTTCTAAACGCCCAATCACGTCACTCTTACCATACAATTTTGAGCTTCG
TCAATTGCTAGGGAAATACCAAAtgattaaaaattgatttttcttccTAT
CTAGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGCATTTTTTCT
ATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACATTAATTGCCGG
TGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTGAAGGGAGCA
TCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGATCAATTGGTC
ATCAAACGGATGGCTG

Coding sequence (CDS) from alignment at sc0000301:148221..150086+

>TCONS_00018497 ID=TCONS_00018497|Name=TCONS_00018497|organism=Clytia hemisphaerica|type=CDS|length=5370bp|location=Sequence derived from alignment at sc0000301:148221..150086+ (Clytia hemisphaerica)
GTTACTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAAT
GACGTTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTTT
TGGATTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCTA
GCTCCCGTTGATCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACACA
AGGTGTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAAA
GTGCTGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTAT
GCAGAAACCTGCCGTtgcgaaaaaaacttcaaagcaGTCTATCGAAATCA
CATGCCGTACTTCGGAATAGAAAACGGGGAACAAATCGGATTACTGAAGA
ACGTTGTAACCGAAGCAACCAATCTCTGTTGTGGAAATTGTTCGAATGGG
CATGGGACCACAAATATCATCTGGGAAAGTCCCATGACGAGTGTCAGCGA
GTTAAATGATGCCATTTTTGATGATACCGACTTCGTGTTGCCAATAGAAA
CGGATAAAATAAACACATACTACAAAAGTAGACCGTTTGTCGGGATTTTG
GATAGCCCAGGAGTTTCCGTATTTTCGCTGAAAGTTGAATATTTGAATTT
GACGAATAATATGATTTTGAATGGAGTGTTGATTTTGTGGTCTTTTGTGG
TGATTGTTGCTTTAATAGTGATGGCTCTTGGATTGATCATGTGGATTGTC
CAATGTCATCCACTTCAACTGAACCGAACGAATCAAGAAGCCTTCCCTGA
TACTTTTTCCCATGGCGCTGGCGCTGGACTTTGGTGGGCTTTCAATACAG
TTCTCCGTATTGGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGC
ATTTTTTCTATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACATT
AATTGCCGGTGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTG
AAGGGAGCATCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGAT
CAATTGGTCATCAAACGGATGGCTGTTACTGGTCCAAACATAACAATATA
TGACAAGTTCTCCTTCACTGAAATGACGTTGAATTGGTCGACTTTATCGT
ATGCAGATTCACAGGGGACAGTTTTGGATTATAACATCATTTATTATCCA
GTCAGAAGGAATGGTATTGATCTAGCTCCCGTTGATCAGGATGTGACAAG
CCTTTGGTTCGAATTTCCAACACAAGGTGTCGAGCTTAACAATCTCGAAC
CTTTCGTCACTTACGCCTTCCAAAGTGCTGCACAGACATTCGCTGGACCC
GGAACTTTCTCAAAGCCTTTTTATGCAGAAACCTGCCGTtgcgaaaaaaa
cttcaaagcaGTCTATCGAAATCACATGCCGTACTTCGGAATAGAAAACG
GGGAACAAATCGGATTACTGAAGAACGTTGTAACCGAAGCAACCAATCTC
TGTTGTGGAAATTGTTCGAATGGGCATGGGACCACAAATATCATCTGGGA
AAGTCCCATGACGAGTGTCAGCGAGTTAAATGATGCCATTTTTGATGATA
CCGACTTCGTGTTGCCAATAGAAACGGATAAAATAAACACATACTACAAA
AGTAGACCGTTTGTCGGGATTTTGGATAGCCCAGGAGTTTCCGTATTTTC
GCTGAAAGTTGAATATTTGAATTTGACGAATAATATGATTTTGAATGGAG
TGTTGATTTTGTGGTCTTTTGTGGTGATTGTTGCTTTAATAGTGATGGCT
CTTGGATTGATCATGTGGATTGTCCAATGTCATCCACTTCAACTGAACCG
AACGAATCAAGAAGCCTTCCCTGATACTTTTTCCCATGGCGCTGGCGCTG
GACTTTGGTGGGCTTTCAATACAGTTCTCCGTATTGGATACGGGGACATC
GTTGCAACTGGAAAACTCGGTCGCATTTTTTCTATTCCAATAATCGCTGT
AGGAATTGCAATAAGTGCTACATTAATTGCCGGTGTTTCGTCCATCTTGT
TGGCTTATTCTGTTCAAAAAACTGAAGGGAGCATCTTTTCAAAGAAAGTT
GTAGCAATGAATGAATCTTATGATCAATTGGTCATCAAACGGATGGCTGT
TACTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAATGA
CGTTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTTTTG
GATTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCTAGC
TCCCGTTGATCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACACAAG
GTGTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAAAGT
GCTGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTATGC
AGAAACCTGCCGTtgcgaaaaaaacttcaaagcaGTCTATCGAAATCACA
TGCCGTACTTCGGAATAGAAAACGGGGAACAAATCGGATTACTGAAGAAC
GTTGTAACCGAAGCAACCAATCTCTGTTGTGGAAATTGTTCGAATGGGCA
TGGGACCACAAATATCATCTGGGAAAGTCCCATGACGAGTGTCAGCGAGT
TAAATGATGCCATTTTTGATGATACCGACTTCGTGTTGCCAATAGAAACG
GATAAAATAAACACATACTACAAAAGTAGACCGTTTGTCGGGATTTTGGA
TAGCCCAGGAGTTTCCGTATTTTCGCTGAAAGTTGAATATTTGAATTTGA
CGAATAATATGATTTTGAATGGAGTGTTGATTTTGTGGTCTTTTGTGGTG
ATTGTTGCTTTAATAGTGATGGCTCTTGGATTGATCATGTGGATTGTCCA
ATGTCATCCACTTCAACTGAACCGAACGAATCAAGAAGCCTTCCCTGATA
CTTTTTCCCATGGCGCTGGCGCTGGACTTTGGTGGGCTTTCAATACAGTT
CTCCGTATTGGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGCAT
TTTTTCTATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACATTAA
TTGCCGGTGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTGAA
GGGAGCATCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGATCA
ATTGGTCATCAAACGGATGGCTGTTACTGGTCCAAACATAACAATATATG
ACAAGTTCTCCTTCACTGAAATGACGTTGAATTGGTCGACTTTATCGTAT
GCAGATTCACAGGGGACAGTTTTGGATTATAACATCATTTATTATCCAGT
CAGAAGGAATGGTATTGATCTAGCTCCCGTTGATCAGGATGTGACAAGCC
TTTGGTTCGAATTTCCAACACAAGGTGTCGAGCTTAACAATCTCGAACCT
TTCGTCACTTACGCCTTCCAAAGTGCTGCACAGACATTCGCTGGACCCGG
AACTTTCTCAAAGCCTTTTTATGCAGAAACCTGCCGTtgcgaaaaaaact
tcaaagcaGTCTATCGAAATCACATGCCGTACTTCGGAATAGAAAACGGG
GAACAAATCGGATTACTGAAGAACGTTGTAACCGAAGCAACCAATCTCTG
TTGTGGAAATTGTTCGAATGGGCATGGGACCACAAATATCATCTGGGAAA
GTCCCATGACGAGTGTCAGCGAGTTAAATGATGCCATTTTTGATGATACC
GACTTCGTGTTGCCAATAGAAACGGATAAAATAAACACATACTACAAAAG
TAGACCGTTTGTCGGGATTTTGGATAGCCCAGGAGTTTCCGTATTTTCGC
TGAAAGTTGAATATTTGAATTTGACGAATAATATGATTTTGAATGGAGTG
TTGATTTTGTGGTCTTTTGTGGTGATTGTTGCTTTAATAGTGATGGCTCT
TGGATTGATCATGTGGATTGTCCAATGTCATCCACTTCAACTGAACCGAA
CGAATCAAGAAGCCTTCCCTGATACTTTTTCCCATGGCGCTGGCGCTGGA
CTTTGGTGGGCTTTCAATACAGTTCTCCGTATTGGATACGGGGACATCGT
TGCAACTGGAAAACTCGGTCGCATTTTTTCTATTCCAATAATCGCTGTAG
GAATTGCAATAAGTGCTACATTAATTGCCGGTGTTTCGTCCATCTTGTTG
GCTTATTCTGTTCAAAAAACTGAAGGGAGCATCTTTTCAAAGAAAGTTGT
AGCAATGAATGAATCTTATGATCAATTGGTCATCAAACGGATGGCTGTTA
CTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAATGACG
TTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTTTTGGA
TTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCTAGCTC
CCGTTGATCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACACAAGGT
GTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAAAGTGC
TGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTATGCAG
AAACCTGCCGTtgcgaaaaaaacttcaaagcaGTCTATCGAAATCACATG
CCGTACTTCGGAATAGAAAACGGGGAACAAATCGGATTACTGAAGAACGT
TGTAACCGAAGCAACCAATCTCTGTTGTGGAAATTGTTCGAATGGGCATG
GGACCACAAATATCATCTGGGAAAGTCCCATGACGAGTGTCAGCGAGTTA
AATGATGCCATTTTTGATGATACCGACTTCGTGTTGCCAATAGAAACGGA
TAAAATAAACACATACTACAAAAGTAGACCGTTTGTCGGGATTTTGGATA
GCCCAGGAGTTTCCGTATTTTCGCTGAAAGTTGAATATTTGAATTTGACG
AATAATATGATTTTGAATGGAGTGTTGATTTTGTGGTCTTTTGTGGTGAT
TGTTGCTTTAATAGTGATGGCTCTTGGATTGATCATGTGGATTGTCCAAT
GTCATCCACTTCAACTGAACCGAACGAATCAAGAAGCCTTCCCTGATACT
TTTTCCCATGGCGCTGGCGCTGGACTTTGGTGGGCTTTCAATACAGTTCT
CCGTATTGGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGCATTT
TTTCTATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACATTAATT
GCCGGTGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTGAAGG
GAGCATCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGATCAAT
TGGTCATCAAACGGATGGCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010372	XLOC_010372	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018497-protein	TCONS_00018497-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000301	supercontig	sc0000301:148221..150086 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581345	0.0020188	6.02731e-05	2.6738e-06	0	0.310192	0	0	0	0	1.03923	0	5.55272	7.3084	0	0.379412	3.84175e-09	0.459513	9.15288	0	0	0.429508	0	2.4016	2.12154	2.45803	0	0	3.93375	0.181132

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR013099	K_chnl_dom
IPR003961	FN3_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00018497 vs. Swiss-Prot (Human)

BLAST of TCONS_00018497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00018497 (transcript) - C. hemisphaerica