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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018520 ID=TCONS_00018520|Name=TCONS_00018520|organism=Clytia hemisphaerica|type=transcript|length=5780bpRun BLAST on NCBI transcript from alignment at sc0000301:224615..250860+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018520 ID=TCONS_00018520|Name=TCONS_00018520|organism=Clytia hemisphaerica|type=transcript|length=26246bp|location=Sequence derived from alignment at sc0000301:224615..250860+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018520 vs. Swiss-Prot (Human)
Match: CAC1A (Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2) HSP 1 Score: 699.893 bits (1805), Expect = 0.000e+0 Identity = 376/821 (45.80%), Postives = 537/821 (65.41%), Query Frame = 3
Query: 1362 KPIVQQNSLFLLSPSNRFRRICHNIVHFRYFDWIIMLVILMSSITLAIEDPVHDDAPRNEILQYFDYFFTTVFGLEVILKVIDRGLVLHKRAYLRSFWNCLXGLVLHKRAYLRSFWNCLDAFVFACNLTSIILAKTAIGSNQSTVTQXXXXXXXXXXXXPLKTIQRVRKLKVVFQCMIYSLKNVTFVLIITYLILFIFACIGVQLFQGKFYYCTDPSKITKEECQGSFYKFESATSVADNDPEVKERKWTRQRFHFDNIYEAFLTLYISSTGEGWPGSMHNTIDATQIGQGPVVNNNPHXXXXXXXXXXXXXXXXXXXXXXXXXLTFQRQGEKEIEG-GLDRNQRDCLQFVLNASPQQRFMPSDKKSLSYHVWYVVDSKPFEYFIMLLIVLNSVQLMMKYNKMSESYASMLTALNLTFTVLFCIEAALKLTAYG-LNYFRDLWNVFDLLVILGSCADLIIFFNESEF--DFIDVSTFRLCRAARIVKLLRKGESIRIMLWTFLQSFKALPYVTVMLLLLFYIYAIIGMQMFGKIALGKVNVV------EIHEYNNFRGLIQALQVLFRTSTGESWNNLMYECYSHALCDK--AIATKDNETCGNTIFAQMYFTTFIFFSMFLLLNLFVAVIMDNFEYLTRDQSILGPHHLQEFVRCWSEFDPQATGTIHHEKVFNVLCQLSPPVGFGKQCPREIAYKRLIRMNMPVDKDGVSVAFHTTLLALIRTSLDIYVSGNMFDN---DKELRRVMESIWPKDCHKHLSKLLPKMKGNGKQLTIGKMYCVKLIILKYRRSKGK--QSLTTKKEHSPSVLTRLNSLLPS 3773
KP+ +S+F+LS +N RR+CH I++ RYF+ I++VI MSSI LA EDPV +APRN +L+YFDY FT VF E+++K+ID GLVLH+ AY R WN LD V + L + + G + +T+ + + + PLKTI+R+ KLK VF C++ SLKNV +LI+ L +FIFA + VQLF+GKF++CTD SK +++C+G + +E N+ + ++R+W + FH+DN+ A LTL+ STGEGWP + +++DAT QGP M I+Y V+ V+F F +NI++ALII+TFQ QG+K +E L++N+R C+ F ++A P R MP +K+S Y +W V S PFEY IM +I LN++ LMMK+ S +Y + L N+ FT LF +E LK+ A+G LNYFRD WN+FD + +LGS D+++ +EF +FI++S RL RAAR++KLLR+G +IRI+LWTF+QSFKALPYV +++ +LF+IYAIIGMQ+FG I + + +I E+NNFR QAL +LFR++TGE+W+N+M C S CDK I T++ CGN FA YF +FIF FL+LNLFVAVIMDNFEYLTRD SILGPHHL E+VR W+E+DP A G + + ++ +L +SPP+G GK+CP +AYKRL+RM++PV D +V F++TL+ALIRT+LDI ++ D D ELR+ M +IWP K L L+ K LT+GK+Y +I+ YR+SK K Q++ +++ +P + R+ P+
Sbjct: 1216 KPMPPYSSMFILSTTNPLRRLCHYILNLRYFEMCILMVIAMSSIALAAEDPVQPNAPRNNVLRYFDYVFTGVFTFEMVIKMID------------------LGLVLHQGAYFRDLWNILDFIVVSGALVAFAFTGNSKGKDINTIKSLRVLRVLR----PLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKFFHCTDESKEFEKDCRGKYLLYEK------NEVKARDREWKKYEFHYDNVLWALLTLFTVSTGEGWPQVLKHSVDATFENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEEYSLEKNERACIDFAISAKPLTRHMPQNKQSFQYRMWQFVVSPPFEYTIMAMIALNTIVLMMKFYGASVAYENALRVFNIVFTSLFSLECVLKVMAFGILNYFRDAWNIFDFVTVLGSITDILV----TEFGNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIGIDVEDEDSDEDEFQITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPCDKNSGILTRE---CGNE-FAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEYVRVWAEYDPAAWGRMPYLDMYQMLRHMSPPLGLGKKCPARVAYKRLLRMDLPVADDN-TVHFNSTLMALIRTALDIKIAKGGADKQQMDAELRKEMMAIWPNLSQKTLDLLVTPHKST--DLTVGKIYAAMMIMEYYRQSKAKKLQAMREEQDRTPLMFQRMEPPSPT 1997 HSP 2 Score: 197.208 bits (500), Expect = 3.662e-50 Identity = 124/216 (57.41%), Postives = 156/216 (72.22%), Query Frame = 3
Query: 3 DWLTNVQSNAENVFVVIFTFEMLLKIFAHGFFGYCRSLFNIFDXXXXXXXXXXXXXRRINDNFSYGLSVLRCLRLLRAFKVTKYWSSLRNLVASLMNAMNAXXXXXXXXXXXXXXXXXXGMQLFGGRFVKLETLPRTNFDTFKDAFLTVFQVITGEDWNAVMYDGMRVYGATSATGIAIAFIYFFFLVIFGNYTLLNVFLAIAVDNLTNAEILTHD 650
+WL++ AE +F+ +F EM +K++ G Y S FN FD V++ SI E+I I S+G+SVLR LRLLR FKVTKYW+SLRNLV SL+N+M +I+SL+FLLFLFIV+++LLGMQLFGG+F E P TNFDTF A +TVFQ++TGEDWN VMYDG++ G G + IYF L +FGNYTLLNVFLAIAVDNL NA+ LT D
Sbjct: 513 EWLSDFLYYAEFIFLGLFMSEMFIKMYGLGTRPYFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSFGISVLRALRLLRIFKVTKYWASLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDEGTPPTNFDTFPAAIMTVFQILTGEDWNEVMYDGIKSQGGVQ--GGMVFSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKD 726 HSP 3 Score: 94.7449 bits (234), Expect = 5.470e-19 Identity = 76/277 (27.44%), Postives = 136/277 (49.10%), Query Frame = 3
Query: 2436 FMPSDKKSLSYHVWYVVDSKPFEYFIMLLIVLNSVQLMMKYNKMSESYASMLTALNLTFTVLFCIEAALKLTAYGLN---YFRDLWNVFDLLVILGSCADLIIFFNESEFDFIDVSTFRLCRAARIVKLLRKGESIRIMLWTFLQSFKALPYVTVMLLLLFYIYAIIGMQMFGKIALGKVNVVEIHEYNNFRGLIQALQVLFRTSTGESWNNLMYECYSHALCDKAIATKDNETCGNTIFAQMYFTTFIFFSMFLLLNLFVAVIMDNF---EYLTRD 3248
F ++ + +++ +V ++ F + ++ L+ LN++ + + + E + L F LF E +K+ YGL YF +N FD VI+GS ++I + F +S R R RI K+ + S+R ++ + L S K++ + +L L ++A++GMQ+FG G+ N E NF A+ +F+ TGE WN +MY+ I ++ G +F+ +YF F + LLN+F+A+ +DN + LT+D
Sbjct: 468 FFHKKERRMRFYIRRMVKTQAFYWTVLSLVALNTLCVAIVHYNQPEWLSDFLYYAEFIFLGLFMSEMFIKM--YGLGTRPYFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSF-GISVLRALRLLRIFKVTKYWASLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFG----GQFNFDEGTPPTNFDTFPAAIMTVFQILTGEDWNEVMYD---------GIKSQGG-VQGGMVFS-IYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKD 726 HSP 4 Score: 89.7373 bits (221), Expect = 1.568e-17 Identity = 90/325 (27.69%), Postives = 148/325 (45.54%), Query Frame = 3
Query: 1305 GMLNVLKFNVGNRRRILK-KKPI-VQQN------SLFLLSPSNRFRRICHNIVHFRYFDWIIMLVILMSSITLAIED--PVHDDAPRNEILQYFDYFFTTVFGLEVILKVIDRGLVLHKRAYLRSFWNCLXGLVLHKRAYLRSFWNCLDAFVFACNLTSIILAKTAIGSNQSTVTQXXXXXXXXXXXXPLKTIQRVRKLKVVFQCMIYSLKNVTFVLIITYLILFIFACIGVQLFQGKFYYCTDPSKITKEECQGSFYKFESATSVADNDPEVKERKWTRQRFH----------FDNIYEAFLTLYISSTGEGWPGSMHNTIDAT 2219
G + K ++ R R + PI V+QN SLFL S N R+ I + F+++I+ I+ + I LA+E P D P +E L + +F +F E +K+I G HK +YLR+ WN +D F LT I+ +G+ T LR +RVLRPLK + + L+VV + ++ ++ + + ++ + + IFA IG++ + GKF+ T + ++ QG ES +P T+ + + FDNI A LT++ T EGW ++N+ DA+
Sbjct: 43 GAQRMYKQSMAQRARTMALYNPIPVRQNCLTVNRSLFLFSEDNVVRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPDDDKTPMSERLDDTEPYFIGIFCFEAGIKII------------------ALGFAFHKGSYLRNGWNVMD---FVVVLTGIL---ATVGTEFDLRT-----LRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILIFAIIGLEFYMGKFH--TTCFEEGTDDIQG-----ESPAPCGTEEPARTCPNGTKCQPYWEGPNNGITQFDNILFAVLTVFQCITMEGWTDLLYNSNDAS 331 The following BLAST results are available for this feature:
BLAST of TCONS_00018520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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