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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018566 ID=TCONS_00018566|Name=TCONS_00018566|organism=Clytia hemisphaerica|type=transcript|length=1868bp
TAAAGACGTGAGGAAAGTTTGAGAGAGAAAATGAACGAGAGCTTGTTGAA
AGGTCAACCACCTTGGTCACCGGTTGTCCCCTACAAAAATCAACTGACGT
TGCCATCCAAAGAACGACTAAGTGCTAGTACGCAAGACTTACGAAATGGT
AACATGTTAAAATACTATGATGGATATCCTCAAGAGAACCACAAGAATCA
TAATtacattgaaacaaatgaaTCACTTATTAAAGAAGAAGATTTGATTC
GGATCAACGTCTGTGGAATGATTTATGAGACTTTGCGAAGCACCCTCCAA
AGATTCCCAGATACGTTACTTGGTGACAAAAGTCGATTGGATTTGTACTA
TGTTAAATCAAgagatttttattattttgataagAACAGACAAGCTTTTG
AAGCCATTCTGTATTATTACCAAACAGGTGGCATTTTGATTCGGCCGCCC
AACATTCCCATGCCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGACCTTGG
TGAAAGTGTCTTTATGCAGTTACAAAAAGAGGAAGGTTACATATCTGACC
AAGAACGCGTCTTACCGACGAACGAGCTTCAACGGAAAGTGTGGGAGTTG
TTCGAATTCCCTGATTCTAGTCAAGCAGCACGCATCCTTGCAACATGGTC
CGTTCTCGTTATCATCTTATCCATCACTGTTTTTTGTTTGGAAACTTTGC
CACAATACTCAGTGAACAACAACAAGCCTCTGACGACTGCTGCACCTTCA
GGGAATGTTACAAACGGTACGCTCTCTGCAACTCCGAGTAAAAGTGAAGG
TGAAATGTACCGTCAACCATGGTTTTCCTTTGAATTAGGCTGCATCATTT
GGTTTTCCTTTGAATATCTGGTGCGCCTTCTCTCATCCCCATCCAAATGG
CAATTTGCCAAATCCTTTCTTAACACCATCGATTTATTGGCCATCCTTCC
TTATTTCATCACCCTATCCATCAATTCGGAGAACACCACACCGCTATCCG
TTCTTCGGGTGGTCCGGTTGGTTCGTGTCTTCCGTATCTTCAAATTGTCC
AGACATTCACTTGGCTTGCGTATCTTGGGACACACATTACGAGCGAGTAT
CAGTGAATTGGGCATGTTGATATTCTTTCTGTGTCTTGGTGTCATTCTGT
TTTCCAGTGCCATATTCTATGCGGAACAAGGAATGAATGATCAATTCCAA
AGCATTCCCGATGCGTTTTGGTACAGTCTAGTCACCATGACAACCGTTGG
ATACGGAGACAAAGTTCCCAAAACATTACCTGGGAAATTTGTTGGAAGTC
TTTGTGCGATCGTTGGCGTGTTGACAATTGCATTGCCAGTACCGGTTATT
GTGTccaattttgagtttttttacaAGCGTGATCGGATGACGTTCGAAAG
GAGCAAGTATAACACACCGTCGGAGAATCAATCCAAACGACAATCACCTG
ATCAATCGCCTCAAAGCAATCATAAAGAGAACAACATCAATCATAATCAC
AACGAAGATCCTCTCTTGACAACTACTGTTATGTAAACTTGTTATCACGA
GAGAGCTCCCGCTACATGGTGATTCATGAGTTTTTGTGGCTGCGTAAATA
AGAGGAGGTAAACCATATGGTGATTGGGTTACCTAAATCCGTTCGGTATA
GAAAGAACACTTTCACTGAAATAGAGatcattaaaattgatgatttaGAC
AGATGCTGATCGCCAAGTTTTAActtttaattgtttttcttaATGAAAGT
CAATGCTGTTAGGTCTTAGCGAATCTTCACTGCAAGTGGTGTCTTTCGAT
TCCTTGTAATAACAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGAAAACT
TAATGTTGTCATCTTCNN Run BLAST on NCBI transcript from alignment at sc0000301:348220..350921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018566 ID=TCONS_00018566|Name=TCONS_00018566|organism=Clytia hemisphaerica|type=transcript|length=2702bp|location=Sequence derived from alignment at sc0000301:348220..350921+ (Clytia hemisphaerica)
TAAAGACGTGAGGAAAGTTTGAGAGAGAAAATGAACGAGAGCTTGTTGAA
AGGTGAATGAAGGGTAATCCCTCTTTTGGCCTTCTTTCTTATTTACTCCT
TCTCCTAGTTGAAACTTGACTCGAATTGTTATCAAATCAAACATGGAAGG
ATCATTTCATAGTTTCACTTCATTAAATCatcttttttcattcttttatt
tcgtttttcttcctttttaaaaatattgttcctcgaacaaaaacttttca
tttacGATTTGATGAAGGACAAAATAAGTTTATTCACCCTCTACCCGAAC
aagaacaaatttctagttGACTGTGTTTTCAACCTGATGTTCTTTTCACT
TAACACCCTATGCTAGATATTTCCCCATTATGCAAACTATCCCTATTTAT
TCATTCTAAGTACTAATGAACTTTGTCTTTTTTCGAGCcttgatgttttt
tttcctCTTCAATTTTGAGATGATTTTTTGCGTTCAAATTAGAAGGAAGa
tatttgagcaaattttattattttaacacGGGAAATTAGAATAGAATGGT
TGCTGACTTTTAAGGTGAAGATTAGATGACCTTTTACAAGTTTGATCAGG
TTTATCAAATATTTAGGTGCTTTGTAAGGGTCAAAGGTTGGCAAATCTGT
CGATTATGTTTGGATTCAAAAGAATTCGTGTGTCCTTCTTTAAAATCTAT
GTTGAGAGAAAAGACTTCACGACCTTGAGCTCAAACCATATTGGCCTGTT
CTTAGACGATTTTAAGCATTCAGTTTGAGTAGTTGACACATCGTACATTA
TTTCGGTTCCTTTCTACCTTTCTTGCGTTTGTTTGATCTACATTCGAAAT
AACATTCtaagttttgtatttttcttcatCGTTCAGGTCAACCACCTTGG
TCACCGGTTGTCCCCTACAAAAATCAACTGACGTTGCCATCCAAAGAACG
ACTAAGTGCTAGTACGCAAGACTTACGAAATGGTAACATGTTAAAATACT
ATGATGGATATCCTCAAGAGAACCACAAGAATCATAATtacattgaaaca
aatgaaTCACTTATTAAAGAAGAAGATTTGATTCGGATCAACGTCTGTGG
AATGATTTATGAGACTTTGCGAAGCACCCTCCAAAGATTCCCAGATACGT
TACTTGGTGACAAAAGTCGATTGGATTTGTACTATGTTAAATCAAgagat
ttttattattttgataagAACAGACAAGCTTTTGAAGCCATTCTGTATTA
TTACCAAACAGGTGGCATTTTGATTCGGCCGCCCAACATTCCCATGCCGT
TGTTCGCAGAGGAGGTGGCCTTCTTTGACCTTGGTGAAAGTGTCTTTATG
CAGTTACAAAAAGAGGAAGGTTACATATCTGACCAAGAACGCGTCTTACC
GACGAACGAGCTTCAACGGAAAGTGTGGGAGTTGTTCGAATTCCCTGATT
CTAGTCAAGCAGCACGCATCCTTGCAACATGGTCCGTTCTCGTTATCATC
TTATCCATCACTGTTTTTTGTTTGGAAACTTTGCCACAATACTCAGTGAA
CAACAACAAGCCTCTGACGACTGCTGCACCTTCAGGGAATGTTACAAACG
GTACGCTCTCTGCAACTCCGAGTAAAAGTGAAGGTGAAATGTACCGTCAA
CCATGGTTTTCCTTTGAATTAGGCTGCATCATTTGGTTTTCCTTTGAATA
TCTGGTGCGCCTTCTCTCATCCCCATCCAAATGGCAATTTGCCAAATCCT
TTCTTAACACCATCGATTTATTGGCCATCCTTCCTTATTTCATCACCCTA
TCCATCAATTCGGAGAACACCACACCGCTATCCGTTCTTCGGGTGGTCCG
GTTGGTTCGTGTCTTCCGTATCTTCAAATTGTCCAGACATTCACTTGGCT
TGCGTATCTTGGGACACACATTACGAGCGAGTATCAGTGAATTGGGCATG
TTGATATTCTTTCTGTGTCTTGGTGTCATTCTGTTTTCCAGTGCCATATT
CTATGCGGAACAAGGAATGAATGATCAATTCCAAAGCATTCCCGATGCGT
TTTGGTACAGTCTAGTCACCATGACAACCGTTGGATACGGAGACAAAGTT
CCCAAAACATTACCTGGGAAATTTGTTGGAAGTCTTTGTGCGATCGTTGG
CGTGTTGACAATTGCATTGCCAGTACCGGTTATTGTGTccaattttgagt
ttttttacaAGCGTGATCGGATGACGTTCGAAAGGAGCAAGTATAACACA
CCGTCGGAGAATCAATCCAAACGACAATCACCTGATCAATCGCCTCAAAG
CAATCATAAAGAGAACAACATCAATCATAATCACAACGAAGATCCTCTCT
TGACAACTACTGTTATGTAAACTTGTTATCACGAGAGAGCTCCCGCTACA
TGGTGATTCATGAGTTTTTGTGGCTGCGTAAATAAGAGGAGGTAAACCAT
ATGGTGATTGGGTTACCTAAATCCGTTCGGTATAGAAAGAACACTTTCAC
TGAAATAGAGatcattaaaattgatgatttaGACAGATGCTGATCGCCAA
GTTTTAActtttaattgtttttcttaATGAAAGTCAATGCTGTTAGGTCT
TAGCGAATCTTCACTGCAAGTGGTGTCTTTCGATTCCTTGTAATAACAGG
AGAAAAGTCTTTAACAAGCAAGTGTTTGAAAACTTAATGTTGTCATCTTC
NN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018566-exon-sc0000301-1491911889:348220..348271 | TCONS_00018566-exon-sc0000301-1491911889:348220..348271 | Clytia hemisphaerica | exon |
| TCONS_00018566-exon-sc0000301-1510915933:348220..348271 | TCONS_00018566-exon-sc0000301-1510915933:348220..348271 | Clytia hemisphaerica | exon |
| TCONS_00018566-exon-sc0000301-1575043694:348220..348271 | TCONS_00018566-exon-sc0000301-1575043694:348220..348271 | Clytia hemisphaerica | exon |
| TCONS_00018566-exon-sc0000301-1491911889:349106..350921 | TCONS_00018566-exon-sc0000301-1491911889:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018566-exon-sc0000301-1510915933:349106..350921 | TCONS_00018566-exon-sc0000301-1510915933:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018566-exon-sc0000301-1575043694:349106..350921 | TCONS_00018566-exon-sc0000301-1575043694:349106..350921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:348220..350921 + |
Blast
BLAST of TCONS_00018566 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 399.438 bits (1025), Expect = 1.459e-131 Identity = 219/438 (50.00%), Postives = 293/438 (66.89%), Query Frame = 1
Query: 172 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPXXXXXXXXXXXXFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKYNTPSENQSKRQSPD 1452
G+PQ+ + E E ++ IN+ G+ +ET TL +FP+TLLGD + Y+ R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE +++EGYI ++ER LP NE QR+VW LFE+P+SS ARI+A SV+VI++SI FCLETLP + N + +N T+ S S + P+F E CIIWFSFE+LVR + PSK F + +N ID++AI+PYFITL + L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+ E+++Y + SPD
Sbjct: 17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPD 443
The following BLAST results are available for this feature:
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