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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018567 ID=TCONS_00018567|Name=TCONS_00018567|organism=Clytia hemisphaerica|type=transcript|length=1899bp
GTTCAAATTAGAAGGAAGatatttgagcaaattttattattttaacacGG
GAAATTAGAATAGAATGGTTGCTGACTTTTAAGGTCAACCACCTTGGTCA
CCGGTTGTCCCCTACAAAAATCAACTGACGTTGCCATCCAAAGAACGACT
AAGTGCTAGTACGCAAGACTTACGAAATGGTAACATGTTAAAATACTATG
ATGGATATCCTCAAGAGAACCACAAGAATCATAATtacattgaaacaaat
gaaTCACTTATTAAAGAAGAAGATTTGATTCGGATCAACGTCTGTGGAAT
GATTTATGAGACTTTGCGAAGCACCCTCCAAAGATTCCCAGATACGTTAC
TTGGTGACAAAAGTCGATTGGATTTGTACTATGTTAAATCAAgagatttt
tattattttgataagAACAGACAAGCTTTTGAAGCCATTCTGTATTATTA
CCAAACAGGTGGCATTTTGATTCGGCCGCCCAACATTCCCATGCCGTTGT
TCGCAGAGGAGGTGGCCTTCTTTGACCTTGGTGAAAGTGTCTTTATGCAG
TTACAAAAAGAGGAAGGTTACATATCTGACCAAGAACGCGTCTTACCGAC
GAACGAGCTTCAACGGAAAGTGTGGGAGTTGTTCGAATTCCCTGATTCTA
GTCAAGCAGCACGCATCCTTGCAACATGGTCCGTTCTCGTTATCATCTTA
TCCATCACTGTTTTTTGTTTGGAAACTTTGCCACAATACTCAGTGAACAA
CAACAAGCCTCTGACGACTGCTGCACCTTCAGGGAATGTTACAAACGGTA
CGCTCTCTGCAACTCCGAGTAAAAGTGAAGGTGAAATGTACCGTCAACCA
TGGTTTTCCTTTGAATTAGGCTGCATCATTTGGTTTTCCTTTGAATATCT
GGTGCGCCTTCTCTCATCCCCATCCAAATGGCAATTTGCCAAATCCTTTC
TTAACACCATCGATTTATTGGCCATCCTTCCTTATTTCATCACCCTATCC
ATCAATTCGGAGAACACCACACCGCTATCCGTTCTTCGGGTGGTCCGGTT
GGTTCGTGTCTTCCGTATCTTCAAATTGTCCAGACATTCACTTGGCTTGC
GTATCTTGGGACACACATTACGAGCGAGTATCAGTGAATTGGGCATGTTG
ATATTCTTTCTGTGTCTTGGTGTCATTCTGTTTTCCAGTGCCATATTCTA
TGCGGAACAAGGAATGAATGATCAATTCCAAAGCATTCCCGATGCGTTTT
GGTACAGTCTAGTCACCATGACAACCGTTGGATACGGAGACAAAGTTCCC
AAAACATTACCTGGGAAATTTGTTGGAAGTCTTTGTGCGATCGTTGGCGT
GTTGACAATTGCATTGCCAGTACCGGTTATTGTGTccaattttgagtttt
tttacaAGCGTGATCGGATGACGTTCGAAAGGAGCAAGTATAACACACCG
TCGGAGAATCAATCCAAACGACAATCACCTGATCAATCGCCTCAAAGCAA
TCATAAAGAGAACAACATCAATCATAATCACAACGAAGATCCTCTCTTGA
CAACTACTGTTATGTAAACTTGTTATCACGAGAGAGCTCCCGCTACATGG
TGATTCATGAGTTTTTGTGGCTGCGTAAATAAGAGGAGGTAAACCATATG
GTGATTGGGTTACCTAAATCCGTTCGGTATAGAAAGAACACTTTCACTGA
AATAGAGatcattaaaattgatgatttaGACAGATGCTGATCGCCAAGTT
TTAActtttaattgtttttcttaATGAAAGTCAATGCTGTTAGGTCTTAG
CGAATCTTCACTGCAAGTGGTGTCTTTCGATTCCTTGTAATAACAGGAGA
AAAGTCTTTAACAAGCAAGTGTTTGAAAACTTAATGTTGTCATCTTCNN Run BLAST on NCBI transcript from alignment at sc0000301:348701..350921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018567 ID=TCONS_00018567|Name=TCONS_00018567|organism=Clytia hemisphaerica|type=transcript|length=2221bp|location=Sequence derived from alignment at sc0000301:348701..350921+ (Clytia hemisphaerica)
GTTCAAATTAGAAGGAAGatatttgagcaaattttattattttaacacGG
GAAATTAGAATAGAATGGTTGCTGACTTTTAAGGTGAAGATTAGATGACC
TTTTACAAGTTTGATCAGGTTTATCAAATATTTAGGTGCTTTGTAAGGGT
CAAAGGTTGGCAAATCTGTCGATTATGTTTGGATTCAAAAGAATTCGTGT
GTCCTTCTTTAAAATCTATGTTGAGAGAAAAGACTTCACGACCTTGAGCT
CAAACCATATTGGCCTGTTCTTAGACGATTTTAAGCATTCAGTTTGAGTA
GTTGACACATCGTACATTATTTCGGTTCCTTTCTACCTTTCTTGCGTTTG
TTTGATCTACATTCGAAATAACATTCtaagttttgtatttttcttcatCG
TTCAGGTCAACCACCTTGGTCACCGGTTGTCCCCTACAAAAATCAACTGA
CGTTGCCATCCAAAGAACGACTAAGTGCTAGTACGCAAGACTTACGAAAT
GGTAACATGTTAAAATACTATGATGGATATCCTCAAGAGAACCACAAGAA
TCATAATtacattgaaacaaatgaaTCACTTATTAAAGAAGAAGATTTGA
TTCGGATCAACGTCTGTGGAATGATTTATGAGACTTTGCGAAGCACCCTC
CAAAGATTCCCAGATACGTTACTTGGTGACAAAAGTCGATTGGATTTGTA
CTATGTTAAATCAAgagatttttattattttgataagAACAGACAAGCTT
TTGAAGCCATTCTGTATTATTACCAAACAGGTGGCATTTTGATTCGGCCG
CCCAACATTCCCATGCCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGACCT
TGGTGAAAGTGTCTTTATGCAGTTACAAAAAGAGGAAGGTTACATATCTG
ACCAAGAACGCGTCTTACCGACGAACGAGCTTCAACGGAAAGTGTGGGAG
TTGTTCGAATTCCCTGATTCTAGTCAAGCAGCACGCATCCTTGCAACATG
GTCCGTTCTCGTTATCATCTTATCCATCACTGTTTTTTGTTTGGAAACTT
TGCCACAATACTCAGTGAACAACAACAAGCCTCTGACGACTGCTGCACCT
TCAGGGAATGTTACAAACGGTACGCTCTCTGCAACTCCGAGTAAAAGTGA
AGGTGAAATGTACCGTCAACCATGGTTTTCCTTTGAATTAGGCTGCATCA
TTTGGTTTTCCTTTGAATATCTGGTGCGCCTTCTCTCATCCCCATCCAAA
TGGCAATTTGCCAAATCCTTTCTTAACACCATCGATTTATTGGCCATCCT
TCCTTATTTCATCACCCTATCCATCAATTCGGAGAACACCACACCGCTAT
CCGTTCTTCGGGTGGTCCGGTTGGTTCGTGTCTTCCGTATCTTCAAATTG
TCCAGACATTCACTTGGCTTGCGTATCTTGGGACACACATTACGAGCGAG
TATCAGTGAATTGGGCATGTTGATATTCTTTCTGTGTCTTGGTGTCATTC
TGTTTTCCAGTGCCATATTCTATGCGGAACAAGGAATGAATGATCAATTC
CAAAGCATTCCCGATGCGTTTTGGTACAGTCTAGTCACCATGACAACCGT
TGGATACGGAGACAAAGTTCCCAAAACATTACCTGGGAAATTTGTTGGAA
GTCTTTGTGCGATCGTTGGCGTGTTGACAATTGCATTGCCAGTACCGGTT
ATTGTGTccaattttgagtttttttacaAGCGTGATCGGATGACGTTCGA
AAGGAGCAAGTATAACACACCGTCGGAGAATCAATCCAAACGACAATCAC
CTGATCAATCGCCTCAAAGCAATCATAAAGAGAACAACATCAATCATAAT
CACAACGAAGATCCTCTCTTGACAACTACTGTTATGTAAACTTGTTATCA
CGAGAGAGCTCCCGCTACATGGTGATTCATGAGTTTTTGTGGCTGCGTAA
ATAAGAGGAGGTAAACCATATGGTGATTGGGTTACCTAAATCCGTTCGGT
ATAGAAAGAACACTTTCACTGAAATAGAGatcattaaaattgatgattta
GACAGATGCTGATCGCCAAGTTTTAActtttaattgtttttcttaATGAA
AGTCAATGCTGTTAGGTCTTAGCGAATCTTCACTGCAAGTGGTGTCTTTC
GATTCCTTGTAATAACAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGAAA
ACTTAATGTTGTCATCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018567-exon-sc0000301-1491911889:348701..348783 | TCONS_00018567-exon-sc0000301-1491911889:348701..348783 | Clytia hemisphaerica | exon |
| TCONS_00018567-exon-sc0000301-1510915933:348701..348783 | TCONS_00018567-exon-sc0000301-1510915933:348701..348783 | Clytia hemisphaerica | exon |
| TCONS_00018567-exon-sc0000301-1575043694:348701..348783 | TCONS_00018567-exon-sc0000301-1575043694:348701..348783 | Clytia hemisphaerica | exon |
| TCONS_00018567-exon-sc0000301-1491911889:349106..350921 | TCONS_00018567-exon-sc0000301-1491911889:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018567-exon-sc0000301-1510915933:349106..350921 | TCONS_00018567-exon-sc0000301-1510915933:349106..350921 | Clytia hemisphaerica | exon |
| TCONS_00018567-exon-sc0000301-1575043694:349106..350921 | TCONS_00018567-exon-sc0000301-1575043694:349106..350921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:348701..350921 + |
Blast
BLAST of TCONS_00018567 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 399.053 bits (1024), Expect = 2.500e-131 Identity = 219/438 (50.00%), Postives = 293/438 (66.89%), Query Frame = 2
Query: 203 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPXXXXXXXXXXXXFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKYNTPSENQSKRQSPD 1483
G+PQ+ + E E ++ IN+ G+ +ET TL +FP+TLLGD + Y+ R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE +++EGYI ++ER LP NE QR+VW LFE+P+SS ARI+A SV+VI++SI FCLETLP + N + +N T+ S S + P+F E CIIWFSFE+LVR + PSK F + +N ID++AI+PYFITL + L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+ E+++Y + SPD
Sbjct: 17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPD 443
The following BLAST results are available for this feature:
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