TCONS_00018569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018569
Unique NameTCONS_00018569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018569 ID=TCONS_00018569|Name=TCONS_00018569|organism=Clytia hemisphaerica|type=transcript|length=1329bp
GTGGATTTGATGCTCAGAGAGATCACCgAAGCAAGAACAAGAAGCATACA
AGTTGTGCAAGATCACTTTTGAAGAACGATGGAAACATCGAGCAAAATGT
TTTCGTCACTTACTCCGCCACAGCTTCTATTTTGCGAGGAAGATGATCGT
TATTTGGATTATGATGTTGATGTTTTGAAGAATTTCCGTCTGTTTTCGTC
CACATTTTCTGTCGATGAGTTGATGAAGGAGATCCCATGGAGCACAGAAC
ATCCCAGCACTTCTGCACAACCTGTTTACAAGAAGTCAGTACGCCAAGAT
TGCATGTGGTCAAGAAAAGTGGATACCAAAGAATCTTTGGAAATCAATAT
CAACAATAACTGTTTACCTTCATCACAAACTTACAATTTGGTTCCTCCCG
ACCTTATCTTATCCGTACGCAAAAAAGGACTTTTCCAACCATGCACGTAC
GATTTACCGAGCTCGTCGGAAAGTTTTCACTCGTCAGATGAAGAGATACG
AATGCAAGGAGATGTAAACATATCACCAAACTCAACAAATCTCGAAAATG
ATGAAGAAGTAAACGTGGTGGACCTCTCACCTCACTCTTGTGTCGGTCTG
CGTGCAGGCCAAAGTTTTTACTCTCATGACAAATCTCCGTTGCACACACC
TTACCGTACGGAAAACGAAGTCAACGAGCACTCTCTACCTTGCACCACTC
CTCGTATGAAAGAATATCTTTTTGACGAACCTACACGTGTCAATCAGAAA
TCTTGTAACCAATCATCTTGTAACCTTTCACCTGATCGAATGCCTTACCA
AATCAAGGAGATAGCTATGAAAAACTGTACGGATAAAGTGAGCAAAATTA
GATATAcagcaaaaaagaagaaaaaagaagaaacaccGATTGATGTAAAA
CAGAGCCCGCAAAAGCGGAAGTCCAATCCCTCAATGCAACATAATATGAT
GGAGAGAGTTCGACGGATAAATCTACGTGAAAAGTATCAAAATCTGCGCA
AAGAGCTCCCCTCTATTTCAGGAAACGTAAAAGTACCGAAAGTAAAAATT
CTTAAGGAAGCTATAATGGAACTAAAACACCTTACATATGAAGAAAGTAA
CCTGAATCATATTAAGCGTTCTTTGATTGACCGTTACGAAGATTTGCAGC
AGAAGTACTCTGATCTACATCAGCATTCTGCAGCATCTTAAACGTAACAT
TTACATTTGGCTCGACTCTTTTGTATTCTTTGTATCTatctgtaaaatat
tttgtgTTAACCTAAACcataatctttttattttaccaaGGAGATCTTCT
CTCCCTCACCAATTCGTGTTTTCTAAATT
Run BLAST on NCBI

transcript from alignment at sc0000301:18409..24070-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018569 ID=TCONS_00018569|Name=TCONS_00018569|organism=Clytia hemisphaerica|type=transcript|length=5662bp|location=Sequence derived from alignment at sc0000301:18409..24070- (Clytia hemisphaerica)
GTGGATTTGATGCTCAGAGAGATCACCGGCTTGTTATTTTTTTCATAATT
GGTGTTATTTTTTAATATGTTACTGCAGTTGGCTTTGTTTGTGTTGTAAT
TGATATATTTTGATAGTTATCCCTTTCATCCTGAAATTGTTTTCTTCTTC
TTTCTATTTTTATTTGGTAATAATAAATTTCATTATCATACACAAGGTGC
TGCTTAGCTGAAAAAACATTATAAAGTTTATTTAAAAAAAACTCTGCTTC
TGTTGGCAAGGAGTGAGTTGTTCTTATAAGAAGTATTTACTTTTGCTCTT
CCAAAAGAGGTGTCATGCAAAAGGTTTTCTCCAAGAGCGCGGTCACACCA
AATGATTTACCTCCGCTTATATAGCTGTTGTCATAACAATAAATATTTTT
ATCTATTTTTTAATGTGACCACTCGAAAAAATGGAAGAAAAAATCCTAAA
TCCGAGGAATCACCTGTTTTAATAAGCGAAAAATAAGACTTGCTCGATAG
CAAGTCTTATCATAGGGAGTTTCTAAACATCGACCAGAAATGGCGACCAC
GACCAGCGACCACGACTGGCGACCAGATAAAGTTGGGTTATCGAGTTTTT
CCTCTTTCTCCACCGTAGAGTCTTTCTCTTATGATCATTTATTTATCGAA
TTGAAGAGTAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGGTAACGTCAAAAGTCACTTTTAGTATTCTC
TAGCTAGAGTAATTCTCAGCCACGTGCTCAGTGGTTCATTTGAAAGCCAC
ATCAGGACTCGATTTGGATGCTCTCTACGGTGGAGAGAGCAGGTAAACTC
GATAACCCAAATTTATCTGGTCGCCGGTCGTGGTCGTCGGTCGTGGTCGC
CATCTCTGGTCGATGTTTAGAAACTCCCCTTATCGTAGTTTAAGAAGAAT
TCCTTTATGTTTAAATAAATAGGTCTATTGAAAATGGCGATTTGTGTTTA
CTTTTCAAATATTGAAAACTTTGAAAAGATGTGCACATCTTTTTTTGCAC
ACGCCATTTACATTCACACACAAGAGAAAAACAATTAAATGGAAAGATTT
TATTTCGATTGAATGAATTTTTATCCACACAAATTTTTAGACTTATTAGA
AATGCTGATTGAAGTTTTCCGACGCGCCGCTTAAAATAAGCAAAAATGGT
GATTCCTTTTTAGCATTAGCTAAACTTATATTTTGGTGTGACCGCGCTCC
AAATGAAGAGCTATTAGAATGTCAAATATCAAAGAATAGGCTTCTTCCTG
TGAAAACAATGCGCACCACGTGTAACGAGAGCTTTAAGTAAACAGGTTGT
ATAATTTGCTTTTTACTTATCTTCGCAAACTCAGTTGAAATTTATTGATT
GTTATTTTGCTTAGAAGCAAGAACAAGAAGCATACAAGTTGTGCAAGATC
ACTTTTGAAGAACGATGGAAACATCGAGCAAAATGTTTTCGTCACTTACT
CCGCCACAGCTTCTATTTTGCGAGGAAGATGATCGTTATTTGGATTATGA
TGTTGATGTTTTGAAGAATTTCCGTCTGTTTTCGTCCACATTTTCTGTCG
ATGAGTTGATGAAGGAGATCCCATGGAGCACAGAACATCCCAGCACTTCT
GCACAACCTGTTTACAAGAAGTCAGTACGCCAAGATTGCATGTGGTCAAG
AAAAGTGGATACCAAAGAATCTTTGGAAATCAATATCAACAATAACTGTT
TACCTTCATCACAAACTTACAATTTGGTTCCTCCCGACCTTATCTTATCC
GTACGCAAAAAAGGACTTTTCCAACCATGCACGTACGATTTACCGAGCTC
GTCGGAAAGTTTTCACTCGTCAGATGAAGAGATACGAATGCAAGGAGATG
TAAACATATCACCAAACTCAACAAATCTCGAAAATGGTAAGGATATTTTC
TTTGTTAATATTTTTCCGAGGGTTTGAATTATAAAAATATTAATCCCTTT
TCTGTTCGATGGGGAAACTACATGTTTTTTTTTTATAAGCAAGTGTCTGC
CCCTACATCAGGGGCAGACACTTGCATTATGCTTAGCATTCTATTGTTCT
CAAACAATAGAGCCATTGTTTAGGTACCAAAAACTGAGCCTGCATATGCT
TATAAACGTTATGCTTATAAAAGAAAAAACATGTAATGGTAATAGCTTTT
TTAAAAGAACATCTATAATTTTTGAAGCCTTCGGATGTTTTAACTTTTTT
GATTTCAAGCCTAAAAATGTTCTTAACATGTTTTTATTTTCACCTTTTTG
TGAGCATTTTTGCCTATTTTCCTATGAAACCGGTTGTTTTAGAGTATGCA
AAGCCTTAAAGTATTCTTAACTTGTTCTTGATATTTTTTTGGTCAACGAA
GCCTTATGATCTTATAAAGTTTGCTCGTATAAAAACAAAAACGCGCAACG
TCTAAAATCCCTCAATTACACCCTAAAGCAGCCAACGAGCCCATTTCCCC
GAAATATCTGTTTCCCTTTTCCAGGAGAGGGCTTTTTTTGAAAAATGGGG
AAACAGATCCGATTTTCTAGGAGAGACCTTTTCCTTAAAACTATCTGTTT
CCCCGCTCCAGCTGATGACGTCATCAGAGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTATGAATAAGAACAGTTTGAGGCTTAAA
GTCAAAGTGCCAAAAAAATAAGAGCAGCCGAGTCTCAGAAAAAATTTTAC
TGGTTCTTATGAAAAAAGTGTAAAGCTTTGGACTTTCTTTTGGCCACATT
TTTATTTAGCTTCAAGATTTTATCTGGGAACCTCCCCTAAAAGCCTTTTA
TTATTAGGGTTGAAATAAAACATGGACGCTGGGCGAAATAAGAGATTTCC
AATCGTGGAAATATCTTGAAAATATGATATTTCCATATACTTTTGTAAAT
ATGGGAAATATGACTTTTCTACATTTGTGGAAATACCATATTTCATGATA
TTTCCAAATCTGAAATATATCCAGAAATATCATATTTTCAAAATGTTTCC
AACTTTTGGAAATATGATATTTCCAAAAATATGAAATATCTTGAAAATAT
GATGTGTCAATGAATTTCAGATTTGGAAATATCATTAAATATGAAATATC
ATATTTTAAATAATCTCCAGGAATGGAAATCTCTTATTTCGCCCAGTTGG
ATTGAAAGCGGGATGTTACAAGAGATTTTACGCGAACCCTCTTACTGAAA
CGAATTTGTATAATTTCTTACTTTGTTGCAGCTGCATATCCTTCCAAGTA
CAGAAATTACTCACAGTGAAACCCAAAAAGTTAAAAGCATTCAATAAGTC
TTACTCTAAAAGGTGCCTAATTATCTGGTACTAGATGCGGAAATTTGTTA
CACGACACGCTTTTCACTGAAGGTCGGGCAAATTTTAACCTTAGAGCTTT
AGCGTGAGTGACCGTCAACAATATGCCATCGTATATCAGATAAGTTGTCA
AATGAACGCCCGTCCCGTCCCCGCATGCTAATTTTCCGATTTTTTTCCAA
CCTCTAACCTTTGTAAAGGTCCCACAAACCTAGCTTTAATCAATAAATTA
TGATAATTACCTTATTTGTCCACCCTCTGCATCCTCCTGTCTATTAGGCA
TATGAGAGTAATAATGTTTTGAAATTCTTACGTTATAAAAAAATGTGTGT
TTGTATTTTTTCAAGAATCTTTTATCTTTTTAGATGAAGAAGTAAACGTG
GTGGACCTCTCACCTCACTCTTGTGTCGGTCTGCGTGCAGGCCAAAGTTT
TTACTCTCATGACAAATCTCCGTTGCACACACCTTACCGTACGGAAAACG
AAGTCAACGAGCACTCTCTACCTTGCACCACTCCTCGTATGAAAGAATAT
CTTTTTGACGAACCTACACGTGTCAATCAGAAATCTTGTAACCAATCATC
TTGTAACCTTTCACCTGATCGAATGCCTTACCAAATCAAGGAGATAGCTA
TGAAAAACTGTACGGATAAAGTGAGCAAAATTAGATATACAGCAAAAAAG
AAGAAAAAAGAAGAAACACCGATTGATGTAAAACAGAGCCCGCAAAAGCG
GAAGTCCAATCCCTCAATGCAACATAATATGATGGAGAGAGTTCGACGGA
TAAATCTACGTGAAAAGTATCAAAATCTGCGCAAAGAGCTCCCCTCTATT
TCAGGAAACGTAAAAGTACCGAAAGTAAAAATTCTTAAGGAAGCTATAAT
GGAACTAAAACACCTTACATATGAAGAAAGTAACCTGAATCATATTAAGC
GTTCTTTGATTGACCGTTACGAAGATTTGCAGCAGAAGTACTCTGATCTA
CATCAGCATTCTGCAGCATCTTAAACGTAACATTTACATTTGGCTCGACT
CTTTTGTATTCTTTGTATCTATCTGTAAAATATTTTGTGTTAACCTAAAC
CATAATCTTTTTATTTTACCAAGGAGATCTTCTCTCCCTCACCAATTCGT
GTTTTCTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010379XLOC_010379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018569-exon-sc0000301-1575043694:24043..24070TCONS_00018569-exon-sc0000301-1575043694:24043..24070Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1575043694:21485..22006TCONS_00018569-exon-sc0000301-1575043694:21485..22006Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1575043694:18409..19187TCONS_00018569-exon-sc0000301-1575043694:18409..19187Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1510915933:24043..24070TCONS_00018569-exon-sc0000301-1510915933:24043..24070Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1510915933:21485..22006TCONS_00018569-exon-sc0000301-1510915933:21485..22006Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1510915933:18409..19187TCONS_00018569-exon-sc0000301-1510915933:18409..19187Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1491911889:24043..24070TCONS_00018569-exon-sc0000301-1491911889:24043..24070Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1491911889:21485..22006TCONS_00018569-exon-sc0000301-1491911889:21485..22006Clytia hemisphaericaexon
TCONS_00018569-exon-sc0000301-1491911889:18409..19187TCONS_00018569-exon-sc0000301-1491911889:18409..19187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:18409..24070 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000345031	0.808571	2.11608	1.16964	0.0448067	0.033606	5.57252e-07	1.34719e-09	0.347012	0.661277	0.320926	0.168771	0.252805	0	0.485649	0.212331	0.0237795	0.121866	0	0	0.18376	0	1.61017	4.27719e-08	0.170049	0.151764	0.173739	0.185419	6.45874e-08	1.32538
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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