TCONS_00018572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018572
Unique NameTCONS_00018572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018572 ID=TCONS_00018572|Name=TCONS_00018572|organism=Clytia hemisphaerica|type=transcript|length=3189bp
NNtatttccaacacttaagttagccaataagattttacctatcaacaaaa
gagctcattaaaaatgcacgatatatgaaattatgagcatgcatacctcg
taatatttttaatcgtagggcaagcatggttacaatagcatacttctcct
gtttctttatacctccatggtcgAAGTAAAGGTTAGAGGATCGGTTacgt
atcaaaagttataaatgTTCTTGTTGTACGAAAAATTCGAATGAAAGATT
TGGCAAAATCAAACTTACATCCAAGTCTTTTTTGGCTAAAGATATCCAAT
TTATTTTCAAGATGTATTTTTTTCCTAGTTAATAAGgtcttcaaaattga
aatacacCACTTTTGTCAAGATATGTCAAAAATCGTTGCAGGCCTCGGTT
TTCAAATGGAATAATTACTTCAAACATCATTTACATAATATGTATACCTA
AAGTCTGTAGCGGAGAGAAAAAAGGCTATAGCTTTTGATAGACTTCGAAg
taaaaatttgagccaaaatttacctgttcttataaaaaagtgcgCATATG
ATTCAATTCGATTTCTATCAAAGTTATAGCCTCTTTTGCTCCGCTGAAGA
TTATATCTACGACAGACTTTACAAATCAGAGTGTGTTTGGCTACCTTGga
caaaaaatgattattttaaaCATTTACTCTAACGAgtcttttccttttat
tttttgaagtcGTTTCTTTGTCCATTTGCTGATGAATAAGGGGGTATTCA
AAAAGTTGCCTGCGGGAGGGTAAAAGGCAGGTGGCCAGTAAAAATGCCAG
AGCCAGTCAGTAAGATTGCTTGTTTGATGGGTTTCATTCTAAACGAaaga
actttttgatttttgaatgtcCCTAATAATGTggaataaatgaatgaatt
tcGGACCCAAAGAAAAACGCTTGAAAGGAGGATGTTGGTATCAAATATTT
CACGACGGGAAGATTTCCTGTATAAAATATCTTAAAAGAATAAATTTGCA
ATACCTCAAAAAGaagattaaatttaaaaatatacaattaaAAATAGTTA
CAAGACCCCCTTACTAAATAATTACGTCGTGTGGTTATTTTAGTTGGTTA
CCTAGCGTTGAATTAGAACCCACGTAATAACATCTATAGGCATGTTGCTG
GATGTTTCAAAACCATCAatgtaaaatatcttttgtaTTCTCACTGCTCA
TCAATGGCAGCAAACATCTTGATGAAGAATACAGAGCCACATTAACATTA
TTGATAATCGTTCAGAAGTTTATCGGTGATTTCTTTGGTTTTACGGCGAT
TTCGGACTGTGGTTGTGAAATAAGTGACACTTGCAATCATGAATCCCAAC
AAGATAAGACCGGCCGTCAGAAGGAAAACTGTGCCAGGGAAAATATTCCT
AGTGATGGAATAAATAAAGTATTCAAAACCGTGGAAACCAACAGTGACGA
TCAAACTGCTAATGATGGCAATCTCGAGTACAGTTCCTAAGGTCTTGGTG
AAATTGATCTTCATGAAGGATGAGATTGTAGGAAAGACAGCTCCTCCAAA
GATATTGATCACCATAACACCAAATAAAGATAAACTGTCTTGAACAACGC
CTAATAATGTGTAATAAAGTATGATATTCAATCCGCCAAGAACGATAAGT
CCACCATGTTTGCATGGTTTGAAGTAAGCCACCGTTTGCANCCTAATAAT
GTGTAATAAAGTATGATATTCAATCCGCCAAGAACGATAAGTCCACCATG
TTTGCATGGTTTGAAGTAAGCCACCGTTTGCACAACCAGTATACCAAATA
TCTTGGCAACACCCTGGGCACTTATACAATAGCCGTATTGGGATACAGAA
AGGTTGAAGGGGGCCTGAAGAAGGTACGGCCCACTGATCATTGAATCTGA
GATTAGTGCGATAGTGAAAATTGAAATCTCCACAATAATCATTAATTCTT
TACGATAAGACGTTTCCGAGAAAATCATAGGTGCTTCACTGAAAATATTA
CTTTCGATCGAAAAAAGGCCGGTCTCTGTTTTTCCTTGCGAGCGTCTCAT
AAGAAAGATTTCTTCTTCGTCTGACGAATCAAGAAGATGCTCATCTTCAT
CATCGTCATTCTCGTTCGATTCCTTCTCATCATTCGTGTCTTTGCTACAT
GAAATCTCTTTGAAAGGGATCAACATAGCACCATACAATGTGGTCAACAA
ACCCATGGTGAACTGCAGCACGAACAACACTGAATAAGCCATGTCAAAAC
AAAAAGCAATCATCATACCGCTGACCACCATTGAGAGAAAAATAGTTGCA
TATGAACCTTCGATTTTCACTGTGGTAATTTCCCGCTGTCGAACTTGAAT
GACATCTGCTTCTCGCTCTTTGGTCAGTTCAAACATCAACAGAAACATCC
CCTGGAAATTACTATGTAAACATGGTAACACAACTCCAGATAAAATAACA
TATTTAAATGTTTTGGTGTCTTCGATGCTCAGAGAATAAGAGAACAAAAC
GCATTGACACAAGATACATATGGGTGGTAAAAGAACAGCCAAGGGTTTAC
ATTTCCTAAGCACTGGTTTCCAGATGAGAAAGTAGGAAAGAAGTGAGATG
ATGGCACCAACAATTGACCCCACGATCATGTAATTCAACGTATCTTTGTT
GACCTGCGACACAAAATCCATATGagtttgatttttcaaagtgtTAGTCA
TATATAAATTGATGCAAGATCCGCGAGTAGTATTTTGCATGTGAAACAAA
TCGAATTTCACTTTGTGCGGTGTGTATGTTTGTATGCAAAGACGCTCCAT
AACGAAGAGTGGCCAAACAAGAGAGTTGATGATGTATGTGGTGAAATACA
ACATGAAATAAGGTGTCACAACCCATGAGGATTGCTTCAGCGGACCCAAA
GTCTCCTCCATTTTGCTCTCCTTGTCCTCTTTAGTAAACAATGTGAGAGA
CTTGGGATGGCCGAGCGATGTAATCATTTCTATGCACCAAAAACAACTAG
ATCACTGCACTTTTTATATCTCTCTCCATATCACAGTACATCGTctactc
aaaacaaaaaatcacatCAAgcaatttttattaaattttctaCACAACGT
CATGCCATTTATTTCTTTTGTCAAAAACACAAGAATTAGCACAAGTTAAC
CATTAATTAAAAAGATCTCTTATCATCTAAGGAACTCTC
Run BLAST on NCBI

transcript from alignment at sc0000301:71440..74701-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018572 ID=TCONS_00018572|Name=TCONS_00018572|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at sc0000301:71440..74701- (Clytia hemisphaerica)
NNTATTTCCAACACTTAAGTTAGCCAATAAGATTTTACCTATCAACAAAA
GAGCTCATTAAAAATGCACGATATATGAAATTATGAGCATGCATACCTCG
TAATATTTTTAATCGTAGGGCAAGCATGGTTACAATAGCATACTTCTCCT
GTTTCTTTATACCTCCATGGTCGAAGTAAAGGTTAGAGGATCGGTTACGT
ATCAAAAGTTATAAATGTTCTTGTTGTACGAAAAATTCGAATGAAAGATT
TGGCAAAATCAAACTTACATCCAAGTCTTTTTTGGCTAAAGATATCCAAT
TTATTTTCAAGATGTATTTTTTTCCTAGTTAATAAGGTCTTCAAAATTGA
AATACACCACTTTTGTCAAGATATGTCAAAAATCGTTGCAGGCCTCGGTT
TTCAAATGGAATAATTACTTCAAACATCATTTACATAATATGTATACCTA
AAGTCTGTAGCGGAGAGAAAAAAGGCTATAGCTTTTGATAGACTTCGAAG
TAAAAATTTGAGCCAAAATTTACCTGTTCTTATAAAAAAGTGCGCATATG
ATTCAATTCGATTTCTATCAAAGTTATAGCCTCTTTTGCTCCGCTGAAGA
TTATATCTACGACAGACTTTACAAATCAGAGTGTGTTTGGCTACCTTGGA
CAAAAAATGATTATTTTAAACATTTACTCTAACGAGTCTTTTCCTTTTAT
TTTTTGAAGTCGTTTCTTTGTCCATTTGCTGATGAATAAGGGGGTATTCA
AAAAGTTGCCTGCGGGAGGGTAAAAGGCAGGTGGCCAGTAAAAATGCCAG
AGCCAGTCAGTAAGATTGCTTGTTTGATGGGTTTCATTCTAAACGAAAGA
ACTTTTTGATTTTTGAATGTCCCTAATAATGTGGAATAAATGAATGAATT
TCGGACCCAAAGAAAAACGCTTGAAAGGAGGATGTTGGTATCAAATATTT
CACGACGGGAAGATTTCCTGTATAAAATATCTTAAAAGAATAAATTTGCA
ATACCTCAAAAAGAAGATTAAATTTAAAAATATACAATTAAAAATAGTTA
CAAGACCCCCTTACTAAATAATTACGTCGTGTGGTTATTTTAGTTGGTTA
CCTAGCGTTGAATTAGAACCCACGTAATAACATCTATAGGGATGTTGCTG
GATGTTTCAAAACCATCAATGTAAAATATCTTTTGTATTCNCCCACGTAA
TAACATCTATAGGCATGTTGCTGGATGTTTCAAAACCATCAATGTAAAAT
ATCTTTTGTATTCTCACTGCTCATCAATGGCAGCAAACATCTTGATGAAG
AATACAGAGCCACATTAACATTATTGATAATCGTTCAGAAGTTTATCGGT
GATTTCTTTGGTTTTACGGCGATTTCGGACTGTGGTTGTGAAATAAGTGA
CACTTGCAATCATGAATCCCAACAAGATAAGACCGGCCGTCAGAAGGAAA
ACTGTGCCAGGGAAAATATTCCTAGTGATGGAATAAATAAAGTATTCAAA
ACCGTGGAAACCAACAGTGACGATCAAACTGCTAATGATGGCAATCTCGA
GTACAGTTCCTAAGGTCTTGGTGAAATTGATCTTCATGAAGGATGAGATT
GTAGGAAAGACAGCTCCTCCAAAGATATTGATCACCATAACACCAAATAA
AGATAAACTGTCTTGAACAACGCCTAATAATGTGTAATAAAGTATGATAT
TCAATCCGCCAAGAACGATAAGTCCACCATGTTTGCATGGTTTGAAGTAA
GCCACCGTTTGCANCCTAATAATGTGTAATAAAGTATGATATTCAATCCG
CCAAGAACGATAAGTCCACCATGTTTGCATGGTTTGAAGTAAGCCACCGT
TTGCACAACCAGTATACCAAATATCTTGGCAACACCCTGGGCACTTATAC
AATAGCCGTATTGGGATACAGAAAGGTTGAAGGGGGCCTGAAGAAGGTAC
GGCCCACTGATCATTGAATCTGAGATTAGTGCGATAGTGAAAATTGAAAT
CTCCACAATAATCATTAATTCTTTACGATAAGACGTTTCCGAGAAAATCA
TAGGTGCTTCACTGAAAATATTACTTTCGATCGAAAAAAGGCCGGTCTCT
GTTTTTCCTTGCGAGCGTCTCATAAGAAAGATTTCTTCTTCGTCTGACGA
ATCAAGAAGATGCTCATCTTCATCATCGTCATTCTCGTTCGATTCCTTCT
CATCATTCGTGTCTTTGCTACATGAAATCTCTTTGAAAGGGATCAACATA
GCACCATACAATGTGGTCAACAAACCCATGGTGAACTGCAGCACGAACAA
CACTGAATAAGCCATGTCAAAACAAAAAGCAATCATCATACCGCTGACCA
CCATTGAGAGAAAAATAGTTGCATATGAACCTTCGATTTTCACTGTGGTA
ATTTCCCGCTGTCGAACTTGAATGACATCTGCTTCTCGCTCTTTGGTCAG
TTCAAACATCAACAGAAACATCCCCTGGAAATTACTATGTAAACATGGTA
ACACAACTCCAGATAAAATAACATATTTAAATGTTTTGGTGTCTTCGATG
CTCAGAGAATAAGAGAACAAAACGCATTGACACAAGATACATATGGGTGG
TAAAAGAACAGCCAAGGGTTTACATTTCCTAAGCACTGGTTTCCAGATGA
GAAAGTAGGAAAGAAGTGAGATGATGGCACCAACAATTGACCCCACGATC
ATGTAATTCAACGTATCTTTGTTGACCTGCGACACAAAATCCATATGAGT
TTGATTTTTCAAAGTGTTAGTCATATATAAATTGATGCAAGATCCGCGAG
TAGTATTTTGCATGTGAAACAAATCGAATTTCACTTTGTGCGGTGTGTAT
GTTTGTATGCAAAGACGCTCCATAACGAAGAGTGGCCAAACAAGAGAGTT
GATGATGTATGTGGTGAAATACAACATGAAATAAGGTGTCACAACCCATG
AGGATTGCTTCAGCGGACCCAAAGTCTCCTCCATTTTGCTCTCCTTGTCC
TCTTTAGTAAACAATGTGAGAGACTTGGGATGGCCGAGCGATGTAATCAT
TTCTATGCACCAAAAACAACTAGATCACTGCACTTTTTATATCTCTCTCC
ATATCACAGTACATCGTCTACTCAAAACAAAAAATCACATCAAGCAATTT
TTATTAAATTTTCTACACAACGTCATGCCATTTATTTCTTTTGTCAAAAA
CACAAGAATTAGCACAAGTTAACCATTAATTAAAAAGATCTCTTATCATC
TAAGGAACTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010381XLOC_010381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018572-exon-sc0000301-1575043694:73571..74701TCONS_00018572-exon-sc0000301-1575043694:73571..74701Clytia hemisphaericaexon
TCONS_00018572-exon-sc0000301-1575043694:71440..73497TCONS_00018572-exon-sc0000301-1575043694:71440..73497Clytia hemisphaericaexon
TCONS_00018572-exon-sc0000301-1510915933:73571..74701TCONS_00018572-exon-sc0000301-1510915933:73571..74701Clytia hemisphaericaexon
TCONS_00018572-exon-sc0000301-1510915933:71440..73497TCONS_00018572-exon-sc0000301-1510915933:71440..73497Clytia hemisphaericaexon
TCONS_00018572-exon-sc0000301-1491911889:73571..74701TCONS_00018572-exon-sc0000301-1491911889:73571..74701Clytia hemisphaericaexon
TCONS_00018572-exon-sc0000301-1491911889:71440..73497TCONS_00018572-exon-sc0000301-1491911889:71440..73497Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:71440..74701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.668612	0.515629	0.583064	0.415883	1.69966	0.677539	2.35672	2.11781	0.588998	0.869499	0.227555	0.502494	1.00873	0.56383	0.195678	0.131955	1.04337	1.17552	1.09257	1.78924	2.02091	1.24759	1.02156	1.21043	0.830632	0.892164	0.319719	0.472023	0.365344	0.600487
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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