Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018575 ID=TCONS_00018575|Name=TCONS_00018575|organism=Clytia hemisphaerica|type=transcript|length=3654bpRun BLAST on NCBI protein sequence of TCONS_00018575-protein >TCONS_00018575-protein ID=TCONS_00018575-protein|Name=TCONS_00018575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1001bp MEDEKKNEKAELIPSGAKRKLSDSTESTEENDDDNYVKKITQEDEFWESERun BLAST on NCBI transcript from alignment at sc0000301:176002..183526- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018575 ID=TCONS_00018575|Name=TCONS_00018575|organism=Clytia hemisphaerica|type=transcript|length=7525bp|location=Sequence derived from alignment at sc0000301:176002..183526- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000301:176002..183526- >TCONS_00018575 ID=TCONS_00018575|Name=TCONS_00018575|organism=Clytia hemisphaerica|type=CDS|length=30060bp|location=Sequence derived from alignment at sc0000301:176002..183526- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018575 vs. Swiss-Prot (Human)
Match: PHRF1 (PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 3.484e-39 Identity = 68/128 (53.12%), Postives = 87/128 (67.97%), Query Frame = 2 Query: 626 CPICLGEFEDQMIGIPESCKHTFCADCIEEWTKNVNNCPVDRKKFNMISVHLTKDGPVIKQIPVQDKTITMVFEEPPTYCEICHECDREEVLLLCDDCDNGYHADCLNPPLSSIPEEEWFCPRCSPPN 1009 CPICL F DQ +G PE+C H FC DCI EW+KN N+CPVDR F I + G ++++IPV++ T EE PT+CE+C DRE+ LLLCD CD GYH +CL+PPL +P +EWFCP C+ P Sbjct: 108 CPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPVDRTLFKCICIRAQFGGKILRKIPVEN-TKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPG 234 The following BLAST results are available for this feature:
BLAST of TCONS_00018575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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