TCONS_00018612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018612
Unique NameTCONS_00018612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018612 ID=TCONS_00018612|Name=TCONS_00018612|organism=Clytia hemisphaerica|type=transcript|length=1797bp
AAGGGAAGAGTTGGTTCATTTTGGAGAATTCAAAATGATGAATTACTGCA
TTTTGGTTTCGACCTTTTTAAGTATAAAAACCATTTCAAGTTCTTACATA
GCATCTGAGAAAGGTTCAATCGCtaaagaaaatttatatttattaaAAGG
AGTAAGCTCTCCAGTTCAATGTACTTTGAGATGCAATCAAAGGAAGGAAG
CTGCTTTTTATGGAGCAGGCGGCACATGCGGATGTTTTTCAAGGGAAGAT
TTATCATCAGACAGTCAGACTGAAATATCTGGATACAATCATTttgagAT
CAGACATACAAAAGCACTCTATATACCCGAAGATACACCAAGACAGAACG
AATTTTCGATGGCAGAACTTGACTTGGTCCAATATCCTGAAGGAAAGATT
GTTAACATTATACCACAAACAACTCACGCATTCGAACTGAATTTCAAAAT
CCAGTATCATCAAAAAGTTGAACACCAGACGCAAGTGTTGGAGTTCACTG
ATGGCTACGGGGTTCATAAAGGTCCTAAAGTCACCATGAAAGGCGATTGG
ATGACGTTCATTTATCGCGATCTAAACTCTAAGAAAGTCTTACTTCAACC
TGATATCACTTATAACGTCACCATTCGACAATATAAGACCGGAGAAGACG
ACAAAGGGCGATTACGTATTCTAATTAATAAAGTGCAAAAATTTCCATCT
TTTCTTCTTGAAAATGTTCCTTGTTATATGAACATCAAATGTCTGATTGG
TGATCCATTTAAGAAGTTGCCTTCAACTCCAGCTGTGGTGACTGATTTGA
ATTATACCACAACACCGGTTTATTTTGGCATAGGTACCCAGATTTTTCTA
CCGGAACATCATACAGTTGAATCAATTGAAAACTGGCCCCCACCGAATTG
GCAAGTCAAATTGGGGATTAAATTAGTAGGAAATGTTGGTTGGGCAGAcg
ctttttttttgtcaaaagctGACGGAAACTTTGTTGGAGGACGAATACCA
AACATTCAATTCTCTCCAACCAATAAAATGCACATATGGTCTCACATTGG
CACTAGCAGTCAAATCGTCTACGAGCAAGNGACGAATACCAAATATTCAA
TTCTCTCCAACCAATAAAATGCACATATGGTCTCACATTGGCACTAGCAC
TCAAATCGTCTACCAGCAAGTCCTTCCATTAAACCAATGGTTTGATatca
aaattgaacaaaaattgagAGGTGGTAATTACTATGTGTTGGTTTTCAAA
GATGGTGTTAAAGTCGCCGAGGTGTTGCACATGGGATACACTGTTATAAG
TGAGCAAGTCAAAGTTTCATTTAGGAATTCACATGGGAAAATCGTGATGC
GAGATTTTGACTATGGTATTGTATAAACAATACTTTACAGTTAGAAAGTA
ACACTGGACTTTAAATAAAACCTGGAGACagcttctcaatcccggccaac
cgAAGTCTTTAGCGTGTTTTGGTAGTGGTAGCCTAATGGTAGCACAACTC
AATAGCGCTATTAATGAATCGAGAACGCTTTACTTATCCTCGAATAAGTA
TGATGATGCAGTACCATTTGAGGTAAATTTTAACACTGTAATGGTTTCTT
TAAAGGTGTCAGAGTTTTCGAAAAAACTCCCCTTTAAAGATGACGGATAT
AGATTAATCCAGGGTTTATAAAGCTCAGTAAAAGCTaacagaaaaaaaga
caaaattgatTGTGGAGCAACCAGCGCTAGGGTGAAATCGAATTATGCTA
ATGGACAATTTGGCCTGACGAGCCTTGTCGGGCAGAGAGGACGGAAA
Run BLAST on NCBI

transcript from alignment at sc0000303:108255..112115+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018612 ID=TCONS_00018612|Name=TCONS_00018612|organism=Clytia hemisphaerica|type=transcript|length=3861bp|location=Sequence derived from alignment at sc0000303:108255..112115+ (Clytia hemisphaerica)
AAGGGAAGAGTTGGTTCATTTTGGAGAATTCAAAATGATGAATTACTGCA
TTTTGGTTTCGACCTTTTTAAGTATAAAAACCATTTCAAGTTCTTACATA
GCATCTGAGAAAGGTTCAATCGCtaaagaaaatttatatttattaaAAGG
AGTAAGCTCTCCAGTTCAATGTACTTTGAGATGCAATCAAAGGAAGGAAG
CTGCTTTTTATGGAGCAGGCGGCACATGCGGATGTTTTTCAAGGGAAGAT
TTATCATCAGACAGTCAGACTGAAATATCTGGATACAATCATTttgaggt
ttttttttttttaataaatttactaattaaattaaatttttgtggAATGT
AGAATGTCAATACCTTTTGCTGGGAAAACTTTGAGTTTAAGTAATCTGTG
TATAGCCTTACCTTTGAACTTCGTCCCCGTGCCTAATCTCCTTTTGATTG
ATTAGAAGGTTAGCCCTGGACTCGTCGATGATGTTTGCCATAAGATTGAG
GATGGGTGAAGCCTTTTATTGTAAATTGTCGCTATAGCGATTCGGCCTCC
ANCCATAAGATTGAGGTTGGGTGAAGCCTTTTATTGTAAATTGTCGCTAT
AGCGATTCGGCCTCCAAGTATaatgttgattttttaataattctATAATA
CTATAAACAAACCGCATCATTTTTGGAGCCTATTCATCAATATGGAAGGA
CTACCTTTTCGCCTGTAAAATTGGCTACCGAATTTTTTTCTCATAGATCA
GACATACAAAAGCACTCTATATACCCGAAGATACACCAAGACAGAACGAA
TTTTCGATGGCAGGTATGTATCTATTTAACGGCTCTATATTTAACATAAG
TGTTCTCAAACACATGTTTCATGTCAGaacagtgtctccctattgttaca
TTATGCTGAATAATAGGTCCTCTTTCTGACCattcttgctccacatccgt
gtcaatccaatgtgaaaaagcttgtatcaatcttatttaaaaacaaagcc
tTTAAGTTCAACAAAACTTTTTACCGAGCAAAAATATATGTACCTTATCA
Gttctttttacaccggcccttattgccgtttttttgggctcgtggcgtaa
taaaggccggcgtaaaagggccaagattttgcaattctaacctaaaagcg
gcgttaattttcttttattattatttctcaatttaaaggactTTAGGTAT
GATTTGAAAACGaaaatccattgttttactccatatttaaaacttcagtg
attttcgatggaattttcaacagtttactactgaaaaatgatatgtaaat
tttagtcattatttactaatttgaagcataagtatccatttttacaaatt
ttgccgttattaacggccctaattggcgtaagccaaaattaggctgtggc
gtaataagggccggcgttaaatgggctggcgttaaattagggccggtgCA
GAAAGGGACGATAAGGTACTTCACGATAAGTCATGTTTTTAATATCTTTA
CCTTACCCCATAGAAGAAAGCTTCTTAAAAACATTGTACAGAGCTGGAGC
AGTTACTGTTTAAGTACtactcaaaaattgaaattttgtgacTGTTATTG
AAAAGGCAGACCAAAATAACCCTAAGTTTGACTAAGGACGCTGCTGTATC
ACAGATCTGTTGAGACCCCTGCCCCTGTGattaatagaatttctattccg
aTTGGGAATTCGAAAGAAATTctgagggaaaaagtttttCAGGAGTGTGT
CAAGGAAAACTGCCGAAAATCTAAGATCTAGAAACGCTTTTACGTGAATA
TCTATCTCTCTTTAGAACTTGACTTGGTCCAATATCCTGAAGGAAAGATT
GTTAACATTATACCACAAACAACTCACGCATTCGAACTGAATTTCAAAAT
CCAGTATCATCAAAAAGTTGAACACCAGACGCAAGTGTTGGAGTTCACTG
ATGGCTACGGGGTTCATAAAGGTCCTAAAGTCACCATGAAAGGCGATTGG
ATGACGTTCATTTATCGCGATCTAAACTCTAAGAAAGTCTTACTTCAACC
TGATATCACTTATAACGTCACCATTCGACAATATAAGACCGGAGAAGACG
ACAAAGGGCGATTACGTATTCTAATTAATAAAGTGCAAAAATTTCCATCT
TTTCTTCTTGAAAATGTTCCTTGTTATATGAACATCAAATGTCTGATTGG
TGATCCATTTAAGAAGTTGCCTTCAACTCCAGCTGTGGTGACTGATTTGA
ATTATACCACAACACCGGTTTATTTTGGCATAGGTAAGAAAATGTGTCAA
AGTTAGATCCATAGGCGCTATGAGAAGCCGTTGGGGGTTAGAGTCGAATC
TCCTATATACGTCTCGGTTCGCGTGTTTTTTAAACAATGAATTGGAAGTA
ACAGATTATGAAATATCTCCTTTTGGGTTCCAAATTTCATCTTTCAGGAA
TCAGAATGGTCATACAttgatatctgacagggtccgtTTTTGAGATCCGA
CGGTCAACTCCCCCCTCCCCCTTATACCCGAAATTTGATATAGCCCATGG
CGTTTTAAATCTATAATATAGAACGCCATGATATAACCCAGTcatctcaa
aattttggtattttatgtTTCATGTTGCTTCAAGTCTTTTTACAATATTT
GGAACAAAACAGGAACTCTCtcagttttaacattagacttaagattTACC
ATGAGATCAAATAACATGCaccagtggaggctaacatgcttTTCCGCATG
TATTTagattctattgtctttaggtgcgaaaaaaataCTGGGACGATTTT
AGGGTGTTagaacggacaaaaaatgcccatCCGgtattggcggctacggt
cgaaaaggtgtaacTTGCTTGATGTGTTTATATATCTCTCAATTTAGGTA
CCCAGATTTTTCTACCGGAACATCATACAGTTGAATCAATTGAAAACTGG
CCCCCACCGAATTGGCAAGTCAAATTGGGGATTAAATTAGTAGGAAATGT
TGGTTGGGCAGAcgctttttttttgtcaaaagctGACGGAAACTTTGTTG
GAGGACGAATACCAAACATTCAATTCTCTCCAACCAATAAAATGCACATA
TGGTCTCACATTGGCACTAGCAGTCAAATCGTCTACGAGCAAGNGACGAA
TACCAAATATTCAATTCTCTCCAACCAATAAAATGCACATATGGTCTCAC
ATTGGCACTAGCACTCAAATCGTCTACCAGCAAGTCCTTCCATTAAACCA
ATGGTTTGATatcaaaattgaacaaaaattgagAGGTGGTAATTACTATG
TGTTGGTTTTCAAAGATGGTGTTAAAGTCGCCGAGGTGTTGCACATGGGA
TACACTGTTATAAGTGAGCAAGTCAAAGTTTCATTTAGGAATTCACATGG
GAAAATCGTGATGCGAGATTTTGACTATGGTATTGTATAAACAATACTTT
ACAGTTAGAAAGTAACACTGGACTTTAAATAAAACCTGGAGACagcttct
caatcccggccaaccgAAGTCTTTAGCGTGTTTTGGTAGTGGTAGCCTAA
TGGTAGCACAACTCAATAGCGCTATTAATGAATCGAGAACGCTTTACTTA
TCCTCGAATAAGTATGATGATGCAGTACCATTTGAGGTAAATTTTAACAC
TGTAATGGTTTCTTTAAAGGTGTCAGAGTTTTCGAAAAAACTCCCCTTTA
AAGATGACGGATATAGATTAATCCAGGGTTTATAAAGCTCAGTAAAAGCT
aacagaaaaaaagacaaaattgatTGTGGAGCAACCAGCGCTAGGGTGAA
ATCGAATTATGCTAATGGACAATTTGGCCTGACGAGCCTTGTCGGGCAGA
GAGGACGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010407XLOC_010407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018612-exon-sc0000303-1491911889:108255..108552TCONS_00018612-exon-sc0000303-1491911889:108255..108552Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1510915933:108255..108552TCONS_00018612-exon-sc0000303-1510915933:108255..108552Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1575043694:108255..108552TCONS_00018612-exon-sc0000303-1575043694:108255..108552Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1491911889:109001..109067TCONS_00018612-exon-sc0000303-1491911889:109001..109067Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1510915933:109001..109067TCONS_00018612-exon-sc0000303-1510915933:109001..109067Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1575043694:109001..109067TCONS_00018612-exon-sc0000303-1575043694:109001..109067Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1491911889:110070..110537TCONS_00018612-exon-sc0000303-1491911889:110070..110537Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1510915933:110070..110537TCONS_00018612-exon-sc0000303-1510915933:110070..110537Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1575043694:110070..110537TCONS_00018612-exon-sc0000303-1575043694:110070..110537Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1491911889:111152..112115TCONS_00018612-exon-sc0000303-1491911889:111152..112115Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1510915933:111152..112115TCONS_00018612-exon-sc0000303-1510915933:111152..112115Clytia hemisphaericaexon
TCONS_00018612-exon-sc0000303-1575043694:111152..112115TCONS_00018612-exon-sc0000303-1575043694:111152..112115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:108255..112115 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0542216	0.487598	0.64645	0.308483	0.251915	0.404729	0.125237	1.98894	1.18496	1.16653	0.932109	0.0641616	0.296543	2.26011	3.25151	0.154678	0.124742	0.144437	0.25461	0.693916	1.15695	0	0.0980808	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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