TCONS_00018616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018616
Unique NameTCONS_00018616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018616 ID=TCONS_00018616|Name=TCONS_00018616|organism=Clytia hemisphaerica|type=transcript|length=366bp
TATTCATAAATGCTTCGACGAAAGTTTTTCTCACGAATTCATGACGGACG
GGAAGAGTCGGTTCATtttggaaaattcaaaatgatgaATTACTGCATTT
TGGTTTCGACTTTTTTAAGTATAAAAACCATTTCAAGTTCTTACATAGCA
TCTGAGAAAGGTTCAATCGCTAAAGAAAACTTATATTTATTAAAAGGAGT
AAGCTCTCCAGTTCAATGCACTTTGAGATGCAATCAAAAGAACGAAGCTG
CTTTTTATGGAGCAGACGGCATATGTGGATGTTTTTCAAGGGAAGATTTA
TCATCAGACAGTCAGACTGAAATATCTGGATACAATTATTTTGAGATCAA
ACATACAAAAGCACTC
Run BLAST on NCBI

protein sequence of TCONS_00018616-protein

>TCONS_00018616-protein ID=TCONS_00018616-protein|Name=TCONS_00018616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MLRRKFFSRIHDGREESVHFGKFKMMNYCILVSTFLSIKTISSSYIASEK
GSIAKENLYLLKGVSSPVQCTLRCNQKNEAAFYGADGICGCFSREDLSSD
SQTEISGYNYFEIKHTKAL
Run BLAST on NCBI

transcript from alignment at sc0000303:120563..121313+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018616 ID=TCONS_00018616|Name=TCONS_00018616|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000303:120563..121313+ (Clytia hemisphaerica)
TATTCATAAATGCTTCGACGAAAGTTTTTCTCACGAATTCATGACGGACG
GGAAGAGTCGGTTCATtttggaaaattcaaaatgatgaATTACTGCATTT
TGGTTTCGACTTTTTTAAGTATAAAAACCATTTCAAGTTCTTACATAGCA
TCTGAGAAAGGTTCAATCGCTAAAGAAAACTTATATTTATTAAAAGGAGT
AAGCTCTCCAGTTCAATGCACTTTGAGATGCAATCAAAAGAACGAAGCTG
CTTTTTATGGAGCAGACGGCATATGTGGATGTTTTTCAAGGGAAGATTTA
TCATCAGACAGTCAGACTGAAATATCTGGATACAATTATTTTGAGGttcg
ttttttaaaaataaatttactgATTAAAACGTCAACGTCAAATTTTTGTG
GAATGTCAATGCCTTTTGCAGGGAAAACTTTGAGTTTAAGTAATCCGGGT
GTAGTCTTACCTTTGAACCTCGTCCCCATGCCTAATCTCGTTTTGATTGA
TTAGAAGGTTATCCCTGGACTCGTCGATGATGTTTTCCATAAGATTGAGG
ATGGGTGATGCCTTTTATTATAAATTGTCGCTATAGCGATTCGGCCTCCA
AGTAGAATGTTGATTTTATAATAAGTTCATAATACTATAAACAAACCCCA
TCTTTTTTGGAGCCTATTCATCAATATGGAAGGACTACCTTTTCGCCTTT
AAAATTGGCTACCCAATTTTTTTCTCATAGATCAAACATACAAAAGCACT
C

Coding sequence (CDS) from alignment at sc0000303:120563..121313+

>TCONS_00018616 ID=TCONS_00018616|Name=TCONS_00018616|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000303:120563..121313+ (Clytia hemisphaerica)
ATGCTTCGACGAAAGTTTTTCTCACGAATTCATGACGGACGGGAAGAGTC
GGTTCATtttggaaaattcaaaatgatgaATTACTGCATTTTGGTTTCGA
CTTTTTTAAGTATAAAAACCATTTCAAGTTCTTACATAGCATCTGAGAAA
GGTTCAATCGCTAAAGAAAACTTATATTTATTAAAAGGAGTAAGCTCTCC
AGTTCAATGCACTTTGAGATGCAATCAAAAGAACGAAGCTGCTTTTTATG
GAGCAGACGGCATATGTGGATGTTTTTCAAGGGAAGATTTATCATCAGAC
AGTCAGACTGAAATATCTGGATACAATTATTTTGAGATCAAACATACAAA
AGCACTCATGCTTCGACGAAAGTTTTTCTCACGAATTCATGACGGACGGG
AAGAGTCGGTTCATtttggaaaattcaaaatgatgaATTACTGCATTTTG
GTTTCGACTTTTTTAAGTATAAAAACCATTTCAAGTTCTTACATAGCATC
TGAGAAAGGTTCAATCGCTAAAGAAAACTTATATTTATTAAAAGGAGTAA
GCTCTCCAGTTCAATGCACTTTGAGATGCAATCAAAAGAACGAAGCTGCT
TTTTATGGAGCAGACGGCATATGTGGATGTTTTTCAAGGGAAGATTTATC
ATCAGACAGTCAGACTGAAATATCTGGATACAATTATTTTGAGATCAAAC
ATACAAAAGCACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010408XLOC_010408Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018616-proteinTCONS_00018616-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018616-exon-sc0000303-1491911889:120563..120907TCONS_00018616-exon-sc0000303-1491911889:120563..120907Clytia hemisphaericaexon
TCONS_00018616-exon-sc0000303-1510915933:120563..120907TCONS_00018616-exon-sc0000303-1510915933:120563..120907Clytia hemisphaericaexon
TCONS_00018616-exon-sc0000303-1575043694:120563..120907TCONS_00018616-exon-sc0000303-1575043694:120563..120907Clytia hemisphaericaexon
TCONS_00018616-exon-sc0000303-1491911889:121293..121313TCONS_00018616-exon-sc0000303-1491911889:121293..121313Clytia hemisphaericaexon
TCONS_00018616-exon-sc0000303-1510915933:121293..121313TCONS_00018616-exon-sc0000303-1510915933:121293..121313Clytia hemisphaericaexon
TCONS_00018616-exon-sc0000303-1575043694:121293..121313TCONS_00018616-exon-sc0000303-1575043694:121293..121313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:120563..121313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.481615	0.581048	1.35992	0.761692	0.707609	0	0.300993	2.95742	1.62701	2.66776	3.28028	0.339274	0.347745	1.25512	1.56803	0.436967	0.639411	0.365878	1.79312	0.727851	1.51571	0.556705	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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