|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018617 ID=TCONS_00018617|Name=TCONS_00018617|organism=Clytia hemisphaerica|type=transcript|length=2805bpRun BLAST on NCBI protein sequence of TCONS_00018617-protein >TCONS_00018617-protein ID=TCONS_00018617-protein|Name=TCONS_00018617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp MKNAGNSDDYGKKFQLTDSLLKRVLSREDYDRIKTIEPVFVYTDELNCKPRun BLAST on NCBI transcript from alignment at sc0000303:205959..219070+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018617 ID=TCONS_00018617|Name=TCONS_00018617|organism=Clytia hemisphaerica|type=transcript|length=13112bp|location=Sequence derived from alignment at sc0000303:205959..219070+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000303:205959..219070+ >TCONS_00018617 ID=TCONS_00018617|Name=TCONS_00018617|organism=Clytia hemisphaerica|type=CDS|length=28404bp|location=Sequence derived from alignment at sc0000303:205959..219070+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018617 vs. Swiss-Prot (Human)
Match: CL056 (Uncharacterized protein C12orf56 OS=Homo sapiens GN=C12orf56 PE=2 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 1.168e-21 Identity = 94/361 (26.04%), Postives = 176/361 (48.75%), Query Frame = 3
Query: 1533 SYSEGPSNVEKPRPSLSHYEVHVFTVAPGSKMFNVIEQAWIYSIITKTCNMKDTSIGILSASQLSQHRKHETDQLTQKFTELKREI-LNTASYDELFLLTKELKFAADKYSVIRRSTWKSPALLGFYVNKM-RILVESK----CTSVTERMDELDAAILFGEFLVSIFQDSEMFNGR-NMILNENSASFVKELLNVILTVPKM--KCFSRDKE---------SSTNDELLDLITNWTETSISILFEVITATKQNVWCCSLGMKSLDVNLLSRFLIDEERHLKTLMDHLVLKLTSSLTEEWEIPPSPFSIVVLYKSLVVLHYVCTHCPCIMDYVKTYYHEEVKYYISKEDNVKRIPSNYPVT 2561
S S+ SN+EK E+H++ ++ S +F ++ +W II T ++D + + + + +++ + F++LK E+ L S + L ELK AA K +++R WK+ L F VNK+ L ES+ + ++R+DEL A I + LV +F+++E + R N + + A F LL ++++ P++ C D + S + EL LI +T T+ ++L+E++ +Q LG ++ + FL + T + +V ++ L+ +++ SP V+LY+ +L H + +Y++ Y EE +Y+I KR+P YP+T
Sbjct: 259 SPSQSNSNLEK-----KESELHLYVISTTSSIFLHLKSSWNNYIIKATL-LQDPFYASEFSPAIGSQKPYRSEEKIKHFSQLKSELFLKDNSLRRILSLLMELKVAAQKNFILKRLFWKTSDLFYFIVNKLHEYLPESRDKNALQNQSQRVDELVACIEIIQTLVLMFRETETESSRLNTLAAKKGALF--NLLVILISEPQIPKSCPVFDIQLVADSALVRMSFDAELQKLILEYTNTATALLYEILLVFQQG--NLGLGSTKFAISWIMSFL-QSCPPIITFVASIVKQVVRGLSASFQLL-SPCQAVLLYQQFYILKSCLRHSRTLAEYIRNNYREEFRYFIHMPALQKRLPLCYPIT 607 The following BLAST results are available for this feature:
BLAST of TCONS_00018617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.