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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018619 ID=TCONS_00018619|Name=TCONS_00018619|organism=Clytia hemisphaerica|type=transcript|length=3524bpRun BLAST on NCBI transcript from alignment at sc0000303:22574..30493- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018619 ID=TCONS_00018619|Name=TCONS_00018619|organism=Clytia hemisphaerica|type=transcript|length=7920bp|location=Sequence derived from alignment at sc0000303:22574..30493- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018619 vs. Swiss-Prot (Human)
Match: BRPF1 (Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2) HSP 1 Score: 228.794 bits (582), Expect = 5.083e-61 Identity = 129/244 (52.87%), Postives = 177/244 (72.54%), Query Frame = 2
Query: 215 PAVHIPFVPAHRLTKIVSKVAIAKKSQFIQQLQSYWMLKRQSRNGVPLLRRLQVNTGSGINRNQ--REQTLEEWSQSKELKEQLRYWQQLRHDXXXXXXXXXXXXXXXXXXXXQYRLKQQLVDMKLKPQQLEMERTLMILQERDTTNIFSEPVKPEEAPDYHDFIKKPMDFSTMRHKLAEYEYMNFEQFETDFNLMIQNCLSFNHEDTVYYRTALRMRTQCKPILKAAHKRIKQACIDPQTGIH 940
P V +P +P HRL+KI +++ I +KSQF+Q+L SYW LKRQSRNGVPLLRRLQ + S N +Q R+ + W+ LKEQL+ WQ+LRHDLER RLL+ELIRKREK+K+E +++Q ++M+L P + + +TL LQE+DT NIFSEPV E PDY D IKKPMDF TM+ L Y Y+NF+ FE DFNL++ NCL +N +DT++YR A+R+R Q +L+ A ++ ++ ID +TG+H
Sbjct: 509 PVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWA----LKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMH 748 HSP 2 Score: 154.066 bits (388), Expect = 1.130e-37 Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 2
Query: 2192 LDFLSLIWAKCKGYPSYPALTIDPSMPRCGFQSNGVPIPIPPLDVLEMNDELDR------YLILFFDAKRTWQWLPRDKIEPLGIDSRLDEVKLVESKKPSMRKNVQEAYKRAIGFRRRLEIGENSDE 2557
LD L L+WAKC+GYPSYPAL IDP MPR G +GVPIP+PPL+VL++ +++ + YL+LFFD KRTWQWLPR K+ PLG++ LD+ K++E +K ++RK+VQ AY RA+ R +++ GE S E
Sbjct: 1083 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQ-GEQSSE 1209 The following BLAST results are available for this feature:
BLAST of TCONS_00018619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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