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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018620 ID=TCONS_00018620|Name=TCONS_00018620|organism=Clytia hemisphaerica|type=transcript|length=5213bpRun BLAST on NCBI protein sequence of TCONS_00018620-protein >TCONS_00018620-protein ID=TCONS_00018620-protein|Name=TCONS_00018620-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1336bp MADIAEMLKTLQRQKPPMDCPLCGKEYRSFSGISYHIIKFHPNGQATQPTRun BLAST on NCBI transcript from alignment at sc0000303:22574..40401- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018620 ID=TCONS_00018620|Name=TCONS_00018620|organism=Clytia hemisphaerica|type=transcript|length=17828bp|location=Sequence derived from alignment at sc0000303:22574..40401- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000303:22574..40401- >TCONS_00018620 ID=TCONS_00018620|Name=TCONS_00018620|organism=Clytia hemisphaerica|type=CDS|length=44121bp|location=Sequence derived from alignment at sc0000303:22574..40401- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018620 vs. Swiss-Prot (Human)
Match: BRPF1 (Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2) HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0 Identity = 395/850 (46.47%), Postives = 538/850 (63.29%), Query Frame = 2
Query: 377 DIAEMLKTLQRQKPPMDCPL--CGKEYRSFSGISYHIIKF-HPN---------------GQATQPTTPYNTSFSNFNTPASLKKRPLSYADSQRMVEFDIKGSLVRSLLSDQLSIEIESEKTEQTEAGEENATALPEIKTCPKSPAKSTPRKKWRGKSRLVHHKQRSALVEMKRNLQLQEAKKVTLPVAMYSIIPEEDIMEKDVPER-KSYFRYIDRTSEELDEDVEYGMDEEDYIWLEGLNDERKNNSLAPVNPEIFEMLMDRLEKESHFETRTVTGDPYNMIDEDAVCSICCDGECSNSNSILFCDMCNLAVHQECYGVPYIPEGQWLCRKCLQSPSKPVSCVLCPTKSGAFKQTDNNQWAHVVCALWIPEVCFANTVFLEPIDSIANIPPARWKLVCYICKKK-SGACIQCFKTNCYTAFHVTCAQQGGLHMKIEAGRLENGQPT---VKKFAYCDVHMPKDAAPGFGTPSHSDYASDEDSDTSCHSKVSTHXXXXXXXXXXXXXXYQTPSAXXXXXXXXXXXXXSFKMPAVHIPFVPAHRLTKIVSKVAIAKKSQFIQQLQSYWMLKRQSRNGVPLLRRLQVNTGSGINRNQ--REQTLEEWSQSKELKEQLRYWQQLRHDXXXXXXXXXXXXXXXXXXXXQYRLKQQLVDMKLKPQQLEMERTLMILQERDTTNIFSEPVKPEEAPDYHDFIKKPMDFSTMRHKLAEYEYMNFEQFETDFNLMIQNCLSFNHEDTVYYRTALRMRTQCKPILKAAHKRIKQACIDPQTGIHXXXXXXXXXXXXXXXXXITK----MIEN-PFMTXXXXXXXXXXXXXXTNGIKSALTRLAQQKLLRKEISKLKRQ 2836
D+ L+ KPP +CP+ C K Y+S+SGI YH+ + H N G+ ++P + S S + S + +SYA +QRMVE D+ G + R + D L ++ SE E E EN + K ++PA +TP+ GK + +K++ + + + LP +Y + E+D D P R SY+RYI++++EELDE+VEY MDEEDYIWL+ +N+ RK ++P+ EIFE LMDRLEKES+FE+ GDP ++DEDAVC IC DGEC NSN ILFCDMCNLAVHQECYGVPYIPEGQWLCR+CLQSPS+ V C LCP K GAFKQTD+ +WAHVVCALWIPEVCFANTVFLEPIDSI +IPPARWKL CYICK++ SGACIQC K NCYTAFHVTCAQQ GL+MK+E R T V+K AYCD+H P +A SHS+ DED + S+ + S + +K+L ++ P V +P +P HRL+KI +++ I +KSQF+Q+L SYW LKRQSRNGVPLLRRLQ + S N +Q R+ + W+ LKEQL+ WQ+LRHDLER RLL+ELIRKREK+K+E +++Q ++M+L P + + +TL LQE+DT NIFSEPV E PDY D IKKPMDF TM+ L Y Y+NF+ FE DFNL++ NCL +N +DT++YR A+R+R Q +L+ A ++ ++ ID +TG+H E+ + ++EN + ++E+++ L +L+ N K ++ R + K+++KE++ L+R+
Sbjct: 6 DVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQ--SPGREVMSYAQAQRMVEVDLHGRVHRISIFDNL--DVVSEDEEAPEEAPENGSN----KENTETPA-ATPKS---GKHK---NKEKRKDSNHHHHHNVSASTTPKLPEVVYREL-EQDT--PDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHN-KGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEDEDEEEDEGKGWSSEKVKKA----------KAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWA----LKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEATHHTEDAAEEERLVLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRK 822 HSP 2 Score: 154.066 bits (388), Expect = 2.413e-37 Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 2
Query: 3881 LDFLSLIWAKCKGYPSYPALTIDPSMPRCGFQSNGVPIPIPPLDVLEMNDELDR------YLILFFDAKRTWQWLPRDKIEPLGIDSRLDEVKLVESKKPSMRKNVQEAYKRAIGFRRRLEIGENSDE 4246
LD L L+WAKC+GYPSYPAL IDP MPR G +GVPIP+PPL+VL++ +++ + YL+LFFD KRTWQWLPR K+ PLG++ LD+ K++E +K ++RK+VQ AY RA+ R +++ GE S E
Sbjct: 1083 LDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQ-GEQSSE 1209 The following BLAST results are available for this feature:
BLAST of TCONS_00018620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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