TCONS_00018624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018624
Unique NameTCONS_00018624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length938

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018624 ID=TCONS_00018624|Name=TCONS_00018624|organism=Clytia hemisphaerica|type=transcript|length=938bp
ATTTCCTCTTTGGGAGCACTTGAAAACTTTAGCAGCAAAGGATGACAAAC
CATGCACCCCGTTGGCATCTGCTGTGGCAGGTTCATTTGCTGGTGGTTTT
GCTGCGGCGCTCACTACACCCATGGATGTGGCCAAAACAAGAATCATACT
GGTTCAGAATGAAGGAAGTCATGGTGGAAACCCTTATAAAGTGATGTACA
GTATTGGCAAAACTGAAGGGATAGCAAGGTTGTTTTCTGGCATTGTACCT
CGTGTTGTCTGGATATCTATTGGTGGATTCATATTCCTGGGAACATATGA
AAAGTCAAAGCAGATTCTCCAGGATCTTGGTATTTGAAATGTGTGGGTTT
GCTGTGCAGTAGTGTGTGGTGTAAATGGGTTCGAAATGGATTGTAATCTC
TGTTTCAAATCAGCCATCACTCATCCTTCGATATTTTTGTGACGTGTGAT
AGATGTGTGAAGACAGAACGACATGATTTAATAACATGTAAATTTCAATA
TCGTGGATACTATTGGCTTCTATTCTAAAAGTTGCATACAGTATCCTGTC
TCCAGATTGTTTGCCAATGACTGGAATAATGAATTTTTAGTGCCTTTAAA
TCTACAGAGACTGACGAAGCTAATCCAAGATGGCactgtcaaatattttt
ttggcttaaaaatatatataaattattttatttaaaagaaatgcaTTTTC
TACGTTCAAATATTAAATAGAATGTTTAAGAGTTTTGctatatattttat
aaattttacaacaaatttgttatacatatttttcagatttttatacATTA
TAAGATAGAACAGTGAACAGAGTTAATTTTATTTCACTTAATTTTAAACG
TCGGGGGAACTTCATCAAAAGTCAAGAGTGgatttacagtgcatttctga
tattttgaaaaacaacccttaaccgccgcaaaTACCCG
Run BLAST on NCBI

transcript from alignment at sc0000303:142189..144343-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018624 ID=TCONS_00018624|Name=TCONS_00018624|organism=Clytia hemisphaerica|type=transcript|length=2155bp|location=Sequence derived from alignment at sc0000303:142189..144343- (Clytia hemisphaerica)
ATTTCCTCTTTGGGAGCACTTGAAAGTGAGTATTATGAGAATTTATGATC
ATTCTGTAGCCCCATTATTTCCTCTTTGGGAACACTTGAAAGTGAGTATT
ATGAGCATTTATGATCATTCTGTAGTCCCATTATTTCCAAACTTTCCTTG
TAACCTTAACTTGATTTAGATAATTCAATTCCTTATAGCAATTAAACTTT
ATCGCTCTCAAGACAATTGACATTTCAAGTTCATCCCCTTGACTTTTACT
TCTTGCTCCAAATTTCTGTCCAACCTTCAAAGTGAAATGGAACTTTGATA
TACATCTTTTATTGTGGTTGCACATTCTTGTTGGGGAAATAAAAGAGGCA
CAAAAATTAAGGTATAAAGGAAGCTCTGCCCTCTGGGTTTTCTTTTTAAA
ACTTTTGAATGATTTTTTCCATTTTATAGACTTTAGCAGCAAAGGATGAC
AAACCATGCACCCCGTTGGCATCTGCTGTGGCAGGTTCATTTGCTGGTGG
TTTTGCTGCGGCGCTCACTACACCCATGGATGTGGCCAAAACAAGAATCA
TACTGGTTCAGGTGAGGGAAATCAAAGAAGAAAAATGTTGATTGTTTTTA
TGAAATGGCCGTCATCAAACCTTTTGGGGCTATTTTTTGTTTTGTTTTTG
TTGTCTTAACGTAAATCTAGCCATTTTTTGCATAAAACGAAACATTTATT
AAACTCTAAAGGGGAAGAATAGCAAGTTCTTTAATTCCAGAACCCCTTAA
ATTAAAATTTTTAGAGTACTACATTGCGAGATAATGAGCTTTGTTAGAAG
ACTTAAATTTTCTGGTGTTTTTAAGTTAAATTTCACTACCCAAACAGTAT
AATCCTTCAGCTTATACCAAGAAAGTAACAAAATTCTGTTCTTTGCTTCT
TTTATTTTTAATGGTGTCTTAGTATGTACGAGTGTTATGATTCTTCGGTT
TTCCAAGCTTCTGAATCCCATTTAGTTATCAGAAAACTTGAAATTGGACA
CTAAAAGAACCAAGTAGTTCAAAAAAATAAATCCTAATTATGACTCTTCA
CTTTGAGCCTTTTACTGTATCATAATAATGATTTCTTTTTTCCAAATAGA
ATGAAGGAAGTCATGGTGGAAACCCTTATAAAGTGATGTACAGTATTGGC
AAAACTGAAGGGATAGCAAGGTTTACTTTTCTCCTTATTTTTTATCAATC
TTACGTTTTATTACACTTGTTCCCTAAACATTCATCAATATTCACCAATA
TGCTTAAATGGATATTGATATAATTTACCACCTATTTACTACCACCTAAA
AGTGGATTTGATTTTATTATATTTAAGTCAAAACAGATTCTGTTACGGTT
CGACCTTTTGACCAAAACCAAATGTCCTTTTTTGACTCCACTTAGTTTAT
TTAAACAAACTATACTAGATTTCTTTACTTATGTTTTGTTTGTAGGTTGT
TTTCTGGCATTGTACCTCGTGTTGTCTGGATATCTATTGGTGGATTCATA
TTCCTGGGAACATATGAAAAGTCAAAGCAGATTCTCCAGGATCTTGGTAT
TTGAAATGTGTGGGTTTGCTGTGCAGTAGTGTGTGGTGTAAATGGGTTCG
AAATGGATTGTAATCTCTGTTTCAAATCAGCCATCACTCATCCTTCGATA
TTTTTGTGACGTGTGATAGATGTGTGAAGACAGAACGACATGATTTAATA
ACATGTAAATTTCAATATCGTGGATACTATTGGCTTCTATTCTAAAAGTT
GCATACAGTATCCTGTCTCCAGATTGTTTGCCAATGACTGGAATAATGAA
TTTTTAGTGCCTTTAAATCTACAGAGACTGACGAAGCTAATCCAAGATGG
CACTGTCAAATATTTTTTTGGCTTAAAAATATATATAAATTATTTTATTT
AAAAGAAATGCATTTTCTACGTTCAAATATTAAATAGAATGTTTAAGAGT
TTTGCTATATATTTTATAAATTTTACAACAAATTTGTTATACATATTTTT
CAGATTTTTATACATTATAAGATAGAACAGTGAACAGAGTTAATTTTATT
TCACTTAATTTTAAACGTCGGGGGAACTTCATCAAAAGTCAAGAGTGGAT
TTACAGTGCATTTCTGATATTTTGAAAAACAACCCTTAACCGCCGCAAAT
ACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010413XLOC_010413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018624-exon-sc0000303-1575043694:144319..144343TCONS_00018624-exon-sc0000303-1575043694:144319..144343Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1575043694:143783..143914TCONS_00018624-exon-sc0000303-1575043694:143783..143914Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1575043694:143174..143244TCONS_00018624-exon-sc0000303-1575043694:143174..143244Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1575043694:142189..142898TCONS_00018624-exon-sc0000303-1575043694:142189..142898Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1510915933:144319..144343TCONS_00018624-exon-sc0000303-1510915933:144319..144343Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1510915933:143783..143914TCONS_00018624-exon-sc0000303-1510915933:143783..143914Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1510915933:143174..143244TCONS_00018624-exon-sc0000303-1510915933:143174..143244Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1510915933:142189..142898TCONS_00018624-exon-sc0000303-1510915933:142189..142898Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1491911889:144319..144343TCONS_00018624-exon-sc0000303-1491911889:144319..144343Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1491911889:143783..143914TCONS_00018624-exon-sc0000303-1491911889:143783..143914Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1491911889:143174..143244TCONS_00018624-exon-sc0000303-1491911889:143174..143244Clytia hemisphaericaexon
TCONS_00018624-exon-sc0000303-1491911889:142189..142898TCONS_00018624-exon-sc0000303-1491911889:142189..142898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:142189..144343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.27055e-06	0	0
Blast
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BLAST of TCONS_00018624 vs. Swiss-Prot (Human)
Match: SAMC (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.946e-18
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 2 
Query:    2 FPLWEHLKTLAA-KDDKPCTPLXXXXXXXXXXXXXXXLTTPMDVAKTRIILVQNEGSHG-GNPYKVMYSIGKTEGIARLFSGIVPRVVWISIGGFIFLGTYEKSKQILQDLG 331
            FPLWE LK L + + D       SAV G+FAGGFAAA+TTP+DVAKTRI L +   S   GN   V++ + +++G+A LF+G+ PR+  IS+GGFIFLG Y+++  +L ++G
Sbjct:  159 FPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLEVG 270
The following BLAST results are available for this feature:
BLAST of TCONS_00018624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAMC7.946e-1849.11S-adenosylmethionine mitochondrial carrier protein... [more]
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