TCONS_00018637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018637
Unique NameTCONS_00018637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018637 ID=TCONS_00018637|Name=TCONS_00018637|organism=Clytia hemisphaerica|type=transcript|length=1267bp
CTCATTTCCTGTatatgttattttttcatttttagtgtgCGAAAGATCTG
GAATGTGTTGACGTTTTGTTCACTTCGCCGGAGACAATATTGTCGGATTC
CAGTAGagatcttttaaagaaaaaggatGTCATCAAAACAATATGTGCTG
TGTTTGTGGATGAAAGCCATTGTATTGAGAAATGgGGAACATCAAGTGAC
AAACGACGAGCAGCTTTCCGTGCATTATTTTCTCAACTTGCAGAAGTCCG
CTCTCTTCTTGCCAAACCCATCCCTTTTGTCGCCATGACGGCAACTGCAA
TGAGAAGAACAAGGGATTTTATAATTGCCAATTTACAAATGTATCAGCCA
AAACTATATATTCGCAGTCCTGGAAAGCAAAACATTACATACACACTACA
CACAGTTAATCacaaaaatgttgataaaattttccaaccccttaTTGAAG
AACTGAGAATTCATAAATATGATTGTGAGCGAgtggttattttttcaaat
cgtGATAATGTCGTTGATATCTTTGGTTCTTTTGACTATATACTTCGGGA
AGAATATCCAATGTACGAGACAAGACCCTACGCAATGTACCATTCTACCA
CAGAGGAACCAATCAAAAAACACATTGTTGAATCCTTTCAAGACCCTAAT
GGAACTATTAGAATTTTAATGGCAACAATAGCCTTTGGTATGGGTATTGA
TTGCAAAAATTTGCATCAGGTTATTCATTTTGGTCCACCTGCTGATCTGG
ATTCTTATTTTCAAGAATCTGGTAGAGCAGGTCGGGATGGCAAGCAAAGT
GTTGCCTTACTTTTACGCTACCCAAAAAGTTTTATTCGAAATTCTTCGGA
AACAATAAAGGAATACTNTTTGCATCACGTTATTCATTTTGGTCCACCTG
CTGATCTGGATTCTTATTTTCAAGAATCTGGTAGAGCAGGTCGGGATGGC
AAGCAAAGTGTTGCCTTACTTTTACGCTACCCAAAAAGTTTTATTCGAAA
TTCTTCGGAAACAATAAAGGAATACTGTTTGTTAGAAGACCAATGTCGTC
GACAAATGTTATTGAAACTTTATGACTCTTCTGAAAAAATTCCCGAAATC
ACGCCACAACACAACTGCTGCGACTTTTGCTATCAGTCATGTGACTGTGG
TGATTGTCACTTACCCAAACACTTTATTGATGTGGATGAGATTAAGCCAA
TTATTGATGTTGATGAAGAAGTGGTAGTTGAAGAAGACACTGAATGCTTT
GAGAAAGAGGACAGTGG
Run BLAST on NCBI

protein sequence of TCONS_00018637-protein

>TCONS_00018637-protein ID=TCONS_00018637-protein|Name=TCONS_00018637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MTATAMRRTRDFIIANLQMYQPKLYIRSPGKQNITYTLHTVNHKNVDKIF
QPLIEELRIHKYDCERVVIFSNRDNVVDIFGSFDYILREEYPMYETRPYA
MYHSTTEEPIKKHIVESFQDPNGTIRILMATIAFGMGIDCKNLHQVIHFG
PPADLDSYFQESGRAGRDGKQSVALLLRYPKSFIRNSSETIKEYXLHHVI
HFGPPADLDSYFQESGRAGRDGKQSVALLLRYPKSFIRNSSETIKEYCLL
EDQCRRQMLLKLYDSSEKIPEITPQHNCCDFCYQSCDCGDCHLPKHFIDV
DEIKPIIDVDEEVVVEEDTECFEKEDS
Run BLAST on NCBI

transcript from alignment at sc0000303:281887..283648-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018637 ID=TCONS_00018637|Name=TCONS_00018637|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at sc0000303:281887..283648- (Clytia hemisphaerica)
CTCATTTCCTGTATATGTTATTTTTTCATTTTTAGTGTGCGAAAGATCTG
GAATGTGTTGACGTTTTGTTCACTTCGCCGGAGACAATATTGTCGGATTC
CAGTAGAGATCTTTTAAAGAAAAAGGATGTCATCAAAACAATATGTGCTG
TGTTTGTGGATGAAAGCCATTGTATTGAGAAATGGTAAGTTATCTAGTAT
ATAAGATTTATTTTTTATGTATTTTAGATGATAATTTGAAAACCATACAA
TTAAACCGTCAACTGATATGAAGTTACTTTCATCAGTAAGGGGTCCTAAC
TTTTATCCCCTCCAAATGACAGACAGACTTTTATATGGTTCTCAATATAT
AAACTTTTAAAGTTCATAACTGANACCATACAATTAAACCGTCAACTGAT
ATGAAGTTACTTTCATCAGTAAGGGGTCCTAACTTTTATCCCCTCCAAAT
GACAGACAGACTTTTATATGGTTCTCAATATATAAACTTTTAAAGTTCAT
AGCTGATATCAAAATTAATTTTGTTTTATTATAGCTACTGTAAGTTTACT
AATTATTGAACAGACCAGAAAATGTTGATGGTTTGTTGGGAAAAATTTTT
ATTCAGTGTCAAATGTTGAATAGCTACATTACATTGTCATAATCTATTAA
TCATATCTATTTTATTTTGCAATTTTCAGGGGAACATCAAGTGACAAACG
ACGAGCAGCTTTCCGTGCATTATTTTCTCAACTTGCAGAAGTCCGCTCTC
TTCTTGCCAAACCCATCCCTTTTGTCGCCATGACGGCAACTGCAATGAGA
AGAACAAGGGATTTTATAATTGCCAATTTACAAATGTATCAGCCAAAACT
ATATATTCGCAGTCCTGGAAAGCAAAACATTACATACACACTACACACAG
TTAATCACAAAAATGTTGATAAAATTTTCCAACCCCTTATTGAAGAACTG
AGAATTCATAAATATGATTGTGAGCGAGTGGTTATTTTTTCAAATCGTGA
TAATGTCGTTGATATCTTTGGTTCTTTTGACTATATACTTCGGGAAGAAT
ATCCAATGTACGAGACAAGACCCTACGCAATGTACCATTCTACCACAGAG
GAACCAATCAAAAAACACATTGTTGAATCCTTTCAAGACCCTAATGGAAC
TATTAGAATTTTAATGGCAACAATAGCCTTTGGTATGGGTATTGATTGCA
AAAATTTGCATCAGGTTATTCATTTTGGTCCACCTGCTGATCTGGATTCT
TATTTTCAAGAATCTGGTAGAGCAGGTCGGGATGGCAAGCAAAGTGTTGC
CTTACTTTTACGCTACCCAAAAAGTTTTATTCGAAATTCTTCGGAAACAA
TAAAGGAATACTNTTTGCATCACGTTATTCATTTTGGTCCACCTGCTGAT
CTGGATTCTTATTTTCAAGAATCTGGTAGAGCAGGTCGGGATGGCAAGCA
AAGTGTTGCCTTACTTTTACGCTACCCAAAAAGTTTTATTCGAAATTCTT
CGGAAACAATAAAGGAATACTGTTTGTTAGAAGACCAATGTCGTCGACAA
ATGTTATTGAAACTTTATGACTCTTCTGAAAAAATTCCCGAAATCACGCC
ACAACACAACTGCTGCGACTTTTGCTATCAGTCATGTGACTGTGGTGATT
GTCACTTACCCAAACACTTTATTGATGTGGATGAGATTAAGCCAATTATT
GATGTTGATGAAGAAGTGGTAGTTGAAGAAGACACTGAATGCTTTGAGAA
AGAGGACAGTGG

Coding sequence (CDS) from alignment at sc0000303:281887..283648-

>TCONS_00018637 ID=TCONS_00018637|Name=TCONS_00018637|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000303:281887..283648- (Clytia hemisphaerica)
ATGACGGCAACTGCAATGAGAAGAACAAGGGATTTTATAATTGCCAATTT
ACAAATGTATCAGCCAAAACTATATATTCGCAGTCCTGGAAAGCAAAACA
TTACATACACACTACACACAGTTAATCACAAAAATGTTGATAAAATTTTC
CAACCCCTTATTGAAGAACTGAGAATTCATAAATATGATTGTGAGCGAGT
GGTTATTTTTTCAAATCGTGATAATGTCGTTGATATCTTTGGTTCTTTTG
ACTATATACTTCGGGAAGAATATCCAATGTACGAGACAAGACCCTACGCA
ATGTACCATTCTACCACAGAGGAACCAATCAAAAAACACATTGTTGAATC
CTTTCAAGACCCTAATGGAACTATTAGAATTTTAATGGCAACAATAGCCT
TTGGTATGGGTATTGATTGCAAAAATTTGCATCAGGTTATTCATTTTGGT
CCACCTGCTGATCTGGATTCTTATTTTCAAGAATCTGGTAGAGCAGGTCG
GGATGGCAAGCAAAGTGTTGCCTTACTTTTACGCTACCCAAAAAGTTTTA
TTCGAAATTCTTCGGAAACAATAAAGGAATACTNTTTGCATCACGTTATT
CATTTTGGTCCACCTGCTGATCTGGATTCTTATTTTCAAGAATCTGGTAG
AGCAGGTCGGGATGGCAAGCAAAGTGTTGCCTTACTTTTACGCTACCCAA
AAAGTTTTATTCGAAATTCTTCGGAAACAATAAAGGAATACTGTTTGTTA
GAAGACCAATGTCGTCGACAAATGTTATTGAAACTTTATGACTCTTCTGA
AAAAATTCCCGAAATCACGCCACAACACAACTGCTGCGACTTTTGCTATC
AGTCATGTGACTGTGGTGATTGTCACTTACCCAAACACTTTATTGATGTG
GATGAGATTAAGCCAATTATTGATGTTGATGAAGAAGTGGTAGTTGAAGA
AGACACTGAATGCTTTGAGAAAGAGGACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010417XLOC_010417Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018637-proteinTCONS_00018637-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018637-exon-sc0000303-1575043694:283465..283648TCONS_00018637-exon-sc0000303-1575043694:283465..283648Clytia hemisphaericaexon
TCONS_00018637-exon-sc0000303-1575043694:281887..282969TCONS_00018637-exon-sc0000303-1575043694:281887..282969Clytia hemisphaericaexon
TCONS_00018637-exon-sc0000303-1510915933:283465..283648TCONS_00018637-exon-sc0000303-1510915933:283465..283648Clytia hemisphaericaexon
TCONS_00018637-exon-sc0000303-1510915933:281887..282969TCONS_00018637-exon-sc0000303-1510915933:281887..282969Clytia hemisphaericaexon
TCONS_00018637-exon-sc0000303-1491911889:283465..283648TCONS_00018637-exon-sc0000303-1491911889:283465..283648Clytia hemisphaericaexon
TCONS_00018637-exon-sc0000303-1491911889:281887..282969TCONS_00018637-exon-sc0000303-1491911889:281887..282969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:281887..283648 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.67232	4.85601	4.241	6.01747	3.45426	3.72021	2.12304	4.90161	1.76144	1.34367	0.0671604	0.0268309	0.025173	0.0441715	0	0	0.0324215	0	0	0	2.48988	2.692	0.0787169	0.0922157	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR011991WHTH_DNA-bd_dom
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00018637 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.635e-24
Identity = 74/255 (29.02%), Postives = 123/255 (48.24%), Query Frame = 3 
Query:   63 VLFTSPETILSDSSRDLLKKKDVIKTICAVFVDESHCIEKWGTSSDKRRAAFRALFSQLAEVRSLLAKPIPFVAMTATAMRRTRDFIIANLQMYQPKLYIRSPGKQNITYTLHTVNHKNVDKIFQPLIEELRIH-KYDCERVVIFSNRDNVVDIFGSFDYILREEYPMYETRPYAMYHSTTEEPIKKHIVESFQDPNGTIRILMATIAFGMGIDCKNLHQVIHFGPPADLDSYFQESGRAGRDGKQSVALLLRYP 824
            +++ +PE      +  LL++ +    I  + VDE+HCI +WG         FR  F +L  +++ L   +P VA+TATA    R+ I+  L +  P++      + N+ Y        N+ +  QP + +   H +++   ++   +R     + G    +               YH+      +K I   F      I+ ++ATIAFGMGI+  ++ QVIH+G P D++SY+QE GRAGRDG QS   +L  P
Sbjct:  638 IVYVTPE--YCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHD-------FRDSFRKLGSLKTALPM-VPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKTGNILQDLQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVTGELRKL---------NLSCGTYHAGMSFSTRKDIHHRF--VRDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAP 870
The following BLAST results are available for this feature:
BLAST of TCONS_00018637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN8.635e-2429.02Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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