TCONS_00018654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018654
Unique NameTCONS_00018654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018654 ID=TCONS_00018654|Name=TCONS_00018654|organism=Clytia hemisphaerica|type=transcript|length=344bp
TTCAAagagaaatttgagaaattccatcttcGAAATACTCCTAAACACTT
GTTACCAGACttgttaaaaatgaattatcttgAACATACTGCATTGTTGT
TAGTCAAGGATTCAAATGATATTGACGAGATATGGAAGAGGCTTAAGAAA
TCATTTGGTGACCCACAAGTGATGCTTGACAAGAAGCTCCAACAATTCGA
CAAACTTAACCTCACGCTCAAATCCAAAAACCTTGAGAAGACAATCGAAT
CACTTGGTGAACTCATCAGCCTCATCAAAGACACCATGAAACTCGCCAAA
CTACACAATGTTGAAGGAAGATTGTACTACAGCAACAGTCTCGA
Run BLAST on NCBI

protein sequence of TCONS_00018654-protein

>TCONS_00018654-protein ID=TCONS_00018654-protein|Name=TCONS_00018654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
FKEKFEKFHLRNTPKHLLPDLLKMNYLEHTALLLVKDSNDIDEIWKRLKK
SFGDPQVMLDKKLQQFDKLNLTLKSKNLEKTIESLGELISLIKDTMKLAK
LHNVEGRLYYSNSL
Run BLAST on NCBI

transcript from alignment at sc0000303:254066..254409

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018654 ID=TCONS_00018654|Name=TCONS_00018654|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at sc0000303:254066..254409 (Clytia hemisphaerica)
TCGAGACTGTTGCTGTAGTACAATCTTCCTTCAACATTGTGTAGTTTGGC
GAGTTTCATGGTGTCTTTGATGAGGCTGATGAGTTCACCAAGTGATTCGA
TTGTCTTCTCAAGGTTTTTGGATTTGAGCGTGAGGTTAAGTTTGTCGAAT
TGTTGGAGCTTCTTGTCAAGCATCACTTGTGGGTCACCAAATGATTTCTT
AAGCCTCTTCCATATCTCGTCAATATCATTTGAATCCTTGACTAACAACA
ATGCAGTATGTTcaagataattcatttttaacaaGTCTGGTAACAAGTGT
TTAGGAGTATTTCgaagatggaatttctcaaatttctctTTGAA

Coding sequence (CDS) from alignment at sc0000303:254066..254409

>TCONS_00018654 ID=TCONS_00018654|Name=TCONS_00018654|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0000303:254066..254409 (Clytia hemisphaerica)
GAGACTGTTGCTGTAGTACAATCTTCCTTCAACATTGTGTAGTTTGGCGA
GTTTCATGGTGTCTTTGATGAGGCTGATGAGTTCACCAAGTGATTCGATT
GTCTTCTCAAGGTTTTTGGATTTGAGCGTGAGGTTAAGTTTGTCGAATTG
TTGGAGCTTCTTGTCAAGCATCACTTGTGGGTCACCAAATGATTTCTTAA
GCCTCTTCCATATCTCGTCAATATCATTTGAATCCTTGACTAACAACAAT
GCAGTATGTTcaagataattcatttttaacaaGTCTGGTAACAAGTGTTT
AGGAGTATTTCgaagatggaatttctcaaatttctctTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010433XLOC_010433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018654-exon-sc0000303-1491911889:254066..254409TCONS_00018654-exon-sc0000303-1491911889:254066..254409Clytia hemisphaericaexon
TCONS_00018654-exon-sc0000303-1510915933:254066..254409TCONS_00018654-exon-sc0000303-1510915933:254066..254409Clytia hemisphaericaexon
TCONS_00018654-exon-sc0000303-1575043694:254066..254409TCONS_00018654-exon-sc0000303-1575043694:254066..254409Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018654-proteinTCONS_00018654-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:254066..254409 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01214	2.34892	0.877801	1.27574	0.457211	1.11223	2.30099	0.381374	1.62045	1.69135	0	1.36386	0.634109	0.824607	0.447675	0	0.426932	0.202206	0	0.539068	0.0416912	0	0.345894	0.273942	5.12109	2.55196	0	0	0.430331	0.29718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top