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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018656 ID=TCONS_00018656|Name=TCONS_00018656|organism=Clytia hemisphaerica|type=transcript|length=1115bp
CTCAATCTGtgatgaaataatgaaaactgaaaactaaatgttttttttac
ttcagttttaattttctctgaatgattgatgaaagtgtcgatattatttt
tctttcaccgttaaacatcgatgcgtttcttaattgctttctccgttcca
atagatatataaatcgaaatttaaaattatacATTACTTCCATTAAATTC
TAATTATTCGTTTTATAAATAGGTAGGTCCATTAAAGTATTACTTGTTTT
TCATGGACTTTTCTGCACAATAGCTTAACTGTAAAGTTTATCTTTTATCA
GGGTTTAGGTGATGATAATGATGAAGGTGGGGTAACGGCCGAGCACGTTG
TTATTGTCCAAGACATGGAACAGGTGTCTGACACAGACGATGACCTGACA
CAGTCACTTAACGGTAGTTTTGATCAAGAAGTTGGTCAGCAGAATCCAGG
AGTTGTTATTAATGAAGTAGTTAATCAGATTCCAGAGGTTGCACAGAATC
CAGAGGTTGTAGTACAAAATCCAGAAGTTGTTGAAAACCTTGTCGTCCAG
AATCTAGGAGTTAATCTGATTCCAGAAGTTGTCCAAAATCCGGGAGTTAA
CCAGGTTCCAGCAGGAGTTAACCAGGTTCCAGCAGGAGTTAATCAGGTTC
AAGCAGGAGTTAACCAGGTTCCAGCAGGAGTTAATCAGGTTCAAGCAGGA
GTTAATCAGGTTCAAGCAGGAGTTAATCAGGTTCAAGCAGGAGTTAATCA
GGTTCCAGGAGGAGTAGGAGTTATTCAGGTTCCAGTTTTTAACAATGGCC
GACGTGGGAACAATGGACGAGGTAGGAACAATGGACGGCGTGGGAACAAT
GGAAGAGGTGGTAACAATGGGCGAGGTGGTAACAATGGGCGAGGTGGTAA
CAATGGGCGAGGTGGTAACAATGGGCGAGGTGGATACAACGGGCGAGGTG
GATACAACGGGCGCAGGCGCGGTGGATACAATTATGGACAGCAAAATCGT
GGACGAGGGGGGTTCCACCCATACCAACAACCAGCTCAGAATCAACCACC
ATTAAGCCCAGTCCAAATGGCGCATCTGCTATTAACAACGATCAATAACT
TCTTTTGAATTGAAT Run BLAST on NCBI protein sequence of TCONS_00018656-protein >TCONS_00018656-protein ID=TCONS_00018656-protein|Name=TCONS_00018656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MEQVSDTDDDLTQSLNGSFDQEVGQQNPGVVINEVVNQIPEVAQNPEVVV
QNPEVVENLVVQNLGVNLIPEVVQNPGVNQVPAGVNQVPAGVNQVQAGVN
QVPAGVNQVQAGVNQVQAGVNQVQAGVNQVPGGVGVIQVPVFNNGRRGNN
GRGRNNGRRGNNGRGGNNGRGGNNGRGGNNGRGGNNGRGGYNGRGGYNGR
RRGGYNYGQQNRGRGGFHPYQQPAQNQPPLSPVQMAHLLLTTINNFF Run BLAST on NCBI transcript from alignment at sc0000303:324238..325352 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018656 ID=TCONS_00018656|Name=TCONS_00018656|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at sc0000303:324238..325352 (Clytia hemisphaerica)
ATTCAATTCAAAAGAAGTTATTGATCGTTGTTAATAGCAGATGCGCCATT
TGGACTGGGCTTAATGGTGGTTGATTCTGAGCTGGTTGTTGGTATGGGTG
GAACCCCCCTCGTCCACGATTTTGCTGTCCATAATTGTATCCACCGCGCC
TGCGCCCGTTGTATCCACCTCGCCCGTTGTATCCACCTCGCCCATTGTTA
CCACCTCGCCCATTGTTACCACCTCGCCCATTGTTACCACCTCGCCCATT
GTTACCACCTCTTCCATTGTTCCCACGCCGTCCATTGTTCCTACCTCGTC
CATTGTTCCCACGTCGGCCATTGTTAAAAACTGGAACCTGAATAACTCCT
ACTCCTCCTGGAACCTGATTAACTCCTGCTTGAACCTGATTAACTCCTGC
TTGAACCTGATTAACTCCTGCTTGAACCTGATTAACTCCTGCTGGAACCT
GGTTAACTCCTGCTTGAACCTGATTAACTCCTGCTGGAACCTGGTTAACT
CCTGCTGGAACCTGGTTAACTCCCGGATTTTGGACAACTTCTGGAATCAG
ATTAACTCCTAGATTCTGGACGACAAGGTTTTCAACAACTTCTGGATTTT
GTACTACAACCTCTGGATTCTGTGCAACCTCTGGAATCTGATTAACTACT
TCATTAATAACAACTCCTGGATTCTGCTGACCAACTTCTTGATCAAAACT
ACCGTTAAGTGACTGTGTCAGGTCATCGTCTGTGTCAGACACCTGTTCCA
TGTCTTGGACAATAACAACGTGCTCGGCCGTTACCCCACCTTCATCATTA
TCATCACCTAAACCCTGATAAAAGATAAACTTTACAGTTAAGCTATTGTG
CAGAAAAGTCCATGAAAAACAAGTAATACTTTAATGGACCTACCTATTTA
TAAAACGAATAATTAGAATTTAATGGAAGTAATgtataattttaaatttc
gatttatatatctattggaacggagaaagcaattaagaaacgcatcgatg
tttaacggtgaaagaaaaataatatcgacactttcatcaatcattcagag
aaaattaaaactgaagtaaaaaaaacatttagttttcagttttcattatt
tcatcaCAGATTGAG Coding sequence (CDS) from alignment at sc0000303:324238..325352 >TCONS_00018656 ID=TCONS_00018656|Name=TCONS_00018656|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000303:324238..325352 (Clytia hemisphaerica)
TCAAAAGAAGTTATTGATCGTTGTTAATAGCAGATGCGCCATTTGGACTG
GGCTTAATGGTGGTTGATTCTGAGCTGGTTGTTGGTATGGGTGGAACCCC
CCTCGTCCACGATTTTGCTGTCCATAATTGTATCCACCGCGCCTGCGCCC
GTTGTATCCACCTCGCCCGTTGTATCCACCTCGCCCATTGTTACCACCTC
GCCCATTGTTACCACCTCGCCCATTGTTACCACCTCGCCCATTGTTACCA
CCTCTTCCATTGTTCCCACGCCGTCCATTGTTCCTACCTCGTCCATTGTT
CCCACGTCGGCCATTGTTAAAAACTGGAACCTGAATAACTCCTACTCCTC
CTGGAACCTGATTAACTCCTGCTTGAACCTGATTAACTCCTGCTTGAACC
TGATTAACTCCTGCTTGAACCTGATTAACTCCTGCTGGAACCTGGTTAAC
TCCTGCTTGAACCTGATTAACTCCTGCTGGAACCTGGTTAACTCCTGCTG
GAACCTGGTTAACTCCCGGATTTTGGACAACTTCTGGAATCAGATTAACT
CCTAGATTCTGGACGACAAGGTTTTCAACAACTTCTGGATTTTGTACTAC
AACCTCTGGATTCTGTGCAACCTCTGGAATCTGATTAACTACTTCATTAA
TAACAACTCCTGGATTCTGCTGACCAACTTCTTGATCAAAACTACCGTTA
AGTGACTGTGTCAGGTCATCGTCTGTGTCAGACACCTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018656-exon-sc0000303-1491911889:324238..325352 | TCONS_00018656-exon-sc0000303-1491911889:324238..325352 | Clytia hemisphaerica | exon |
| TCONS_00018656-exon-sc0000303-1510915933:324238..325352 | TCONS_00018656-exon-sc0000303-1510915933:324238..325352 | Clytia hemisphaerica | exon |
| TCONS_00018656-exon-sc0000303-1575043694:324238..325352 | TCONS_00018656-exon-sc0000303-1575043694:324238..325352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000303 | supercontig | sc0000303:324238..325352 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023908 | xxxLxxG_rpt |
Blast
The following BLAST results are available for this feature:
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