|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018666 ID=TCONS_00018666|Name=TCONS_00018666|organism=Clytia hemisphaerica|type=transcript|length=1311bp
NNCAAAATAATAGGCGCAACGAGGCAACCATATCTCTAAATAGATGTGTG
CAACGAGGCATTGACATCTCCAAGTTGATATGTGCAAACGTGGCAGTGAT
ATCCAAAAATGTTTCAACTCCGTAATTTAATTGTAACGTTTCGTACCTTG
TAAGGTGGTATGTTCAACGAGGCATTGACACCACGATCAACAATAAGCGA
TATATGCAACGACGGCAGGGATATCTTTCAAAATAATAGGCGCAACGAGG
CAACCATATCTCTAAATTGATGCGTGCAACGAGGCATTGACATCTACAAG
TTGATATGTGCAAACGTGGCAGTGATATCCAAAATTGTTTCAACTCCGTA
ATTTAATTGTAACGTTTCGTACATGAAAAACAAGAGAAAGCAGAAAATAA
CACCTGTCTTTGCCACAGTGCAAAGTTCCttgtaaaagtttgaaaattgc
tGATGGTCAAAATCTCAAGAATGACATGTAAGGAAAATAAAATCTGTTCA
GAAAATATACAATAAATCTTGAATCGTTTCATTCATCAAATACAATGTAT
AAAGCTAGCGAATAAAAACtcgcaaaaacatcaaaaatacaACAACAGTT
AGAATTGTTAATAAGGTAATGGTCAAGTACaagaaattgtttaaaaaaag
gcaaGAAAATTGTGCCATTAGGTGTGAGTAAAGGCCAAAAATAAGCAGAT
GACCATAAAGCGACAAAAGAATTCCCCTCTTGACAATTCTCCCAGTATTC
TGAAGTTGATAAAAGGACTTATTATTAACGAAAGAAGTATAGACTTTCCT
CAACACTAATAacaaattcaattaaaaaactTAATAACAAGTAACCGTAA
TAATGACGAAATGTCTTTTTGAAACACTTTCagtcttttaatttcttttc
ccACTTTTGGATGGCGatgatttatgttttgatgtagaACTAGAGGAACT
TGATGACGTTTTTGATGATACAGGAACCTGAGGTTGTTCTTTTTGAACTA
GAGGACAATAACTGGCATAATGTCCCATGCGTCTGCAGTTAAAGCATTGA
ATTTCGTCTAAACTTTGAGTGAAAGAGGATTCCTTGTGTGCTTTTTTCTC
TGTTTCGATTCTCGATCTGAATTGCTCGAACGATTTTCTTGCTTCTTTCA
GATGTTTCTCACTGAGGTCCCCAGTCGAGAGAAGAAGGTTTTGTTTGTAG
TGTTTTACGACACCCCATCCTTCCTTGTCTGCTAATTTGATAATGGAAAT
TCTGTCTTCTAAAAGTTTCTTACCTTGTTTCATAAATCCGGTTGCTGAGT
TGTTGTCACCC Run BLAST on NCBI transcript from alignment at sc0000304:47901..49424- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018666 ID=TCONS_00018666|Name=TCONS_00018666|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at sc0000304:47901..49424- (Clytia hemisphaerica)
NNCAAAATAATAGGCGCAACGAGGCAACCATATCTCTAAATAGATGTGTG
CAACGAGGCATTGACATCTCCAAGTTGATATGTGCAAACGTGGCAGTGAT
ATCCAAAAATGTTTCAACTCCGTAATTTAATTGTAACGTTTCGTACATGA
AAAACAAGAGAAAGCAGAAATTAACACCTGTCTTTGCCACCTTGCAAAGT
TCCTTGTAAAAGTTTGAAAATCGCTGATCGGCAAAATCTCAAGAATGACA
TGTAAAAAAAATAAAAATCTGTTCAGAAAAAAATGACAATAAATCCTGTG
TAGTTGCCTCTGGATGGTAAAGAAAAATTATAGAAAAAATGTAAATGTAA
CTCTCATACCTTGTAAGGTGGTATGTTCAACGAGGCATTGACACCACGAT
CAACAATAAGCGATATATGCAACGACGGCAGGGATATCTTTCAAAATAAT
AGGCGCAACGAGGCAACCATATCTCTAAATTGATGCGTGCAACGAGGCAT
TGACATCTACAAGTTGATATGTGCAAACGTGGCAGTGATATCCAAAATTG
TTTCAACTCCGTAATTTAATTGTAACGTTTCGTACATGAAAAACAAGAGA
AAGCAGAAAATAACACCTGTCTTTGCCACAGTGCAAAGTTCCTTGTAAAA
GTTTGAAAATTGCTGATGGTCAAAATCTCAAGAATGACATGTAAGGAAAA
TAAAATCTGTTCAGAAAATATACAATAAATCTTGAATCGTTTCATTCATC
AAATACAATGTATAAAGCTAGCGAATAAAAACTCGCAAAAACATCAAAAA
TACAACAACAGTTAGAATTGTTAATAAGGTAATGGTCAAGTACAAGAAAT
TGTTTAAAAAAAGGCAAGAAAATTGTGCCATTAGGTGTGAGTAAAGGCCA
AAAATAAGCAGATGACCATAAAGCGACAAAAGAATTCCCCTCTTGACAAT
TCTCCCAGTATTCTGAAGTTGATAAAAGGACTTATTATTAACGAAAGAAG
TATAGACTTTCCTCAACACTAATAACAAATTCAATTAAAAAACTTAATAA
CAAGTAACCGTAATAATGACGAAATGTCTTTTTGAAACACTTTCAGTCTT
TTAATTTCTTTTCCCACTTTTGGATGGCGATGATTTATGTTTTGATGTAG
AACTAGAGGAACTTGATGACGTTTTTGATGATACAGGAACCTGAGGTTGT
TCTTTTTGAACTAGAGGACAATAACTGGCATAATGTCCCATGCGTCTGCA
GTTAAAGCATTGAATTTCGTCTAAACTTTGAGTGAAAGAGGATTCCTTGT
GTGCTTTTTTCTCTGTTTCGATTCTCGATCTGAATTGCTCGAACGATTTT
CTTGCTTCTTTCAGATGTTTCTCACTGAGGTCCCCAGTCGAGAGAAGAAG
GTTTTGTTTGTAGTGTTTTACGACACCCCATCCTTCCTTGTCTGCTAATT
TGATAATGGAAATTCTGTCTTCTAAAAGTTTCTTACCTTGTTTCATAAAT
CCGGTTGCTGAGTTGTTGTCACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018666-exon-sc0000304-1575043694:49279..49424 | TCONS_00018666-exon-sc0000304-1575043694:49279..49424 | Clytia hemisphaerica | exon |
| TCONS_00018666-exon-sc0000304-1575043694:47901..49065 | TCONS_00018666-exon-sc0000304-1575043694:47901..49065 | Clytia hemisphaerica | exon |
| TCONS_00018666-exon-sc0000304-1510915933:49279..49424 | TCONS_00018666-exon-sc0000304-1510915933:49279..49424 | Clytia hemisphaerica | exon |
| TCONS_00018666-exon-sc0000304-1510915933:47901..49065 | TCONS_00018666-exon-sc0000304-1510915933:47901..49065 | Clytia hemisphaerica | exon |
| TCONS_00018666-exon-sc0000304-1491911889:49279..49424 | TCONS_00018666-exon-sc0000304-1491911889:49279..49424 | Clytia hemisphaerica | exon |
| TCONS_00018666-exon-sc0000304-1491911889:47901..49065 | TCONS_00018666-exon-sc0000304-1491911889:47901..49065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:47901..49424 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
