TCONS_00018669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018669
Unique NameTCONS_00018669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018669 ID=TCONS_00018669|Name=TCONS_00018669|organism=Clytia hemisphaerica|type=transcript|length=1687bp
CGAGCTCTAAAATGAATTCTTTTCTGCTCTCTTGATTTCCTACAGTTTCT
ACCGAGTTAAAAGTATTGAACACTTAAAACAGtaagaacaaaagaaagaa
taaaaaacaCAAATCGAAGTTTGTGTATCGAGTGCTTGAATCTACTAGTA
ATTTTTTGCACAAGAAAAATACGTCAAAGAGGTCGGCCATTCAAAAAATT
TGTCGGTTTGTAACTGCAGGAAATCGTAAAAGCTTTCCACCACGCGAGCA
AAAATGGCCATTCATTCAAAATCCTCATGTCTTTTGTTCTACCATGTGAT
CATCAAACGACCAATCAGAGAGCATATTTTATAATAAATCGGCCAATCAG
CGAGAAGCATCCAAGAAAGCGCGAGAACATGATAGGgggttttgttttgg
tttaaaacaaaacaaattagtGCGAATACAATAGATTTCGGAGAGTTTGA
CCCCCTGACAACGACTGCTATAAATATTAAGATTTTGGCGCCATAATCCA
TCGAAATCATTCTTTCAATCGCAGCTGACTGAAGTGGGGGACCATCTCTT
CAATTATCTTCTTCGCTTGTAACTCTAAATCTACGAAAAATGGCTGATGA
AACTGCTCAACAAAAAACTGAAACCCCAGTTGAAAACAAGGAAGAAGTAA
CCAAAGAAGTTACTGAAGAGAAGACAGAAACTACCAAAGCAGAGACCACC
CCTGAATCAACAACAGAAACCACTgaaaaaacagaagaaaagGAGACCAC
CGAAACTACAGAAGAGACTCCAAAAACTAATGGAACCACCGAAACTGAAA
CAACTGAAGAAAAAACTGAAGAATCTCTGAAGCGAAAAGATGCCCCCACT
GAGGCTCCAGAGGATGAAATCAAGAAGAAGAAAGTTGAAACTGACGAAGC
ACCAGAAAAATTAGCAGTTCAAGAAGCCGAAGCATAAATGATGGAATTGA
CTGCATTTTTAAATTACCCATGTACATATTCATGCCAAGCTTGTGCTATG
CACACTGTTGAAATCCGCTCTCCACACACCATATGTCGAATCTGACATTC
ACGTACATTCTGCATGTCTGCACTTGAGGATATTATGATAATAAACTAAA
CTGTTGAACAGGTTGAATCCTAATGTTGCTGTTTTTACAAAGAGACGTTC
ACCATAGTcgtattttgaattttttaaacaaataacTCTTTAGTATACAA
AGTATTCCCTTGATGGGTTGTATTTATTTAACGTAACAAAGCAAGATGTG
ACAAAGCTTGAGTTGATATAATGTTGAAATACATAtttgttatgttttta
tattcACTTTTGTTGTCTGAAAATTTTTTAGTCAACCAAACTAATCATTT
TCGAGTATTAGTCAACCAACCCACAGCAGGGTTCccagcggtcagggaaa
acctggaaaaaaggctgtttttggaaaaagtcagggaaaatcagaaaaaa
tggaCGAAAGTCAGGGAATTTTCTCAAAGGTTGGgttataatttcaaaat
caacaattaattttaatttatccaattattttatttcttttttcgacAAC
TTTAATACCTATGACCTTTACAACTGTGGAAATAATAGTCAGGAAAAAGG
CACATTTTCACGTGTGAAAGTCATGGGAAAAGAACTTTTTAAGGGAAAAT
ATTTTCCCTAAAGCAGTGGGAACCCTGCACAGATCAC
Run BLAST on NCBI

protein sequence of TCONS_00018669-protein

>TCONS_00018669-protein ID=TCONS_00018669-protein|Name=TCONS_00018669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MADETAQQKTETPVENKEEVTKEVTEEKTETTKAETTPESTTETTEKTEE
KETTETTEETPKTNGTTETETTEEKTEESLKRKDAPTEAPEDEIKKKKVE
TDEAPEKLAVQEAEA
Run BLAST on NCBI

transcript from alignment at sc0000304:100590..103148-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018669 ID=TCONS_00018669|Name=TCONS_00018669|organism=Clytia hemisphaerica|type=transcript|length=2559bp|location=Sequence derived from alignment at sc0000304:100590..103148- (Clytia hemisphaerica)
CGAGCTCTAAAATGAATTCTTTTCTGCTCTCTTGATTTCCTACAGTTTCT
ACCGAGTTAAAAGTATTGAACACTTAAAACAGTAAGAACAAAAGAAAGAA
TAAAAAACACAAATCGAAGTTTGTGTATCGAGTGCTTGAATCTACTAGTA
ATTTTTTGCACAAGAAAAATACGTCAAAGAGGTCGGCCATTCAAAAAATT
TGTCGGTTTGTAACTGCAGGAAATCGTAAAAGCTTTCCACCACGCGAGCA
AAAATGGCCATTCATTCAAAATCCTCATGTCTTTTGTTCTACCATGTGAT
CATCAAACGACCAATCAGAGAGCATATTTTATAATAAATCGGCCAATCAG
CGAGAAGCATCCAAGAAAGCGCGAGAACATGATAGGGGGTTTTGTTTTGG
TTTAAAACAAAACAAATTAGTGCGAATACAATAGATTTCGGAGAGTTTGA
CCCCCTGACAACGACTGCTATAAATATTAAGATTTTGGCGCCATAATCCA
TCGAAATCATTCTTTCAATCGCAGCTGACTGAAGTGGGGGACCATCTCTT
CAATTATCTTCTTCGCTTGTAACTCTAAATCTACGAAAAATGGCTGATGA
AACTGCTCAACAAAAAACTGAAACCCCAGTTGAAAACAAGGTAATTACGT
TTGAATAATAATTGTCAGTCGAAAAAAAGTAAGCCACTTATTCCAGTTAC
GTTTGGTGATTAGAAAATCTACTATGTCAAGCTCTCGATTTTTTATAAAA
TGTATGAAAATCATGTATCTACTTGAAATTCATCAATAAGATAAATATCA
GATTTCAGTACACATGGGTTTGATTGCCCTCAAAATTAGAGATTTTTGAT
TAAAAGACTTGAAGAACTTTTTTTTTTGTTATTTCTAGGAAGAAGTAACC
AAAGAAGTTACTGAAGAGAAGACAGAAACTACCAAAGCAGAGACCACCCC
TGAATCAACAACAGAAACCACTGAAAAAACAGAAGAAAAGGTAAATTTTT
GGTTTACAAATCACAACTCAATCATCAATGCTCTAAATTTCACATTGAAA
ACTTGGAGAACTAAGCTTCACGAGAAGACTATATTTAGCTAATGTTCCAG
TTAGGGGTCCGTTCAAGAATTAACTTTGAGACAGCAGGTTACTACTTGTC
TCTAAATTTCTACTTTTTCTCCCACATAGAAAATTTGTACATATATCTAA
TTTTTCAATATTTAGAAAACCTATTTTTGCGTCCGGTGTAGCGAAAGGAT
ACTTTTTGCCACTGGACAGTCCGGTGCGTAGGCAGGGTCCTCTACTGTGC
TGGTGGGTTGGGTAAGAACTACCAATACAGCTGACAAATATCAAGAAAAT
CGCTTTTAAAGTTTGAGATCAGATTTTAATCATTTAGAAATTGATACCTG
ATCAGAAAAATGAAATCAAATTGTCCTAGTTTTGGTCCTTGCTAACTAAC
TTTACTGATTAACTGTATTATTGGTAATTTAGGAGACCACCGAAACTACA
GAAGAGACTCCAAAAACTAATGGAACCACCGAAACTGAAACAACTGAAGA
AAAAACTGAAGAATCTCTGAAGCGAAAAGATGCCCCCACTGAGGTAATGC
CTTTTCTAGATTCTGCCAAAACAGTTAAATCATTGAATTAAAATTTTTGG
TATTAGCCTGATAACTGTCTGAGTGAAAAAAAATCTCTGGAAATCTATAA
TAACCTATAATTTAAATTTGCACAGGCTCCAGAGGATGAAATCAAGAAGA
AGAAAGTTGAAACTGACGAAGCACCAGAAAAATTAGCAGTTCAAGAAGCC
GAAGCATAAATGATGGAATTGACTGCATTTTTAAATTACCCATGTACATA
TTCATGCCAAGCTTGTGCTATGCACACTGTTGAAATCCGCTCTCCACACA
CCATATGTCGAATCTGACATTCACGTACATTCTGCATGTCTGCACTTGAG
GATATTATGATAATAAACTAAACTGTTGAACAGGTTGAATCCTAATGTTG
CTGTTTTTACAAAGAGACGTTCACCATAGTCGTATTTTGAATTTTTTAAA
CAAATAACTCTTTAGTATACAAAGTATTCCCTTGATGGGTTGTATTTATT
TAACGTAACAAAGCAAGATGTGACAAAGCTTGAGTTGATATAATGTTGAA
ATACATATTTGTTATGTTTTTATATTCACTTTTGTTGTCTGAAAATTTTT
TAGTCAACCAAACTAATCATTTTCGAGTATTAGTCAACCAACCCACAGCA
GGGTTCCCAGCGGTCAGGGAAAACCTGGAAAAAAGGCTGTTTTTGGAAAA
AGTCAGGGAAAATCAGAAAAAATGGACGAAAGTCAGGGAATTTTCTCAAA
GGTTGGGTTATAATTTCAAAATCAACAATTAATTTTAATTTATCCAATTA
TTTTATTTCTTTTTTCGACAACTTTAATACCTATGACCTTTACAACTGTG
GAAATAATAGTCAGGAAAAAGGCACATTTTCACGTGTGAAAGTCATGGGA
AAAGAACTTTTTAAGGGAAAATATTTTCCCTAAAGCAGTGGGAACCCTGC
ACAGATCAC

Coding sequence (CDS) from alignment at sc0000304:100590..103148-

>TCONS_00018669 ID=TCONS_00018669|Name=TCONS_00018669|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000304:100590..103148- (Clytia hemisphaerica)
GCTCCAGAGGATGAAATCAAGAAGAAGAAAGTTGAAACTGACGAAGCACC
AGAAAAATTAGCAGTTCAAGAAGCCGAAGCATAAGAGACCACCGAAACTA
CAGAAGAGACTCCAAAAACTAATGGAACCACCGAAACTGAAACAACTGAA
GAAAAAACTGAAGAATCTCTGAAGCGAAAAGATGCCCCCACTGAGGAAGA
AGTAACCAAAGAAGTTACTGAAGAGAAGACAGAAACTACCAAAGCAGAGA
CCACCCCTGAATCAACAACAGAAACCACTGAAAAAACAGAAGAAAAGATG
GCTGATGAAACTGCTCAACAAAAAACTGAAACCCCAGTTGAAAACAAGGC
TCCAGAGGATGAAATCAAGAAGAAGAAAGTTGAAACTGACGAAGCACCAG
AAAAATTAGCAGTTCAAGAAGCCGAAGCATAAGAGACCACCGAAACTACA
GAAGAGACTCCAAAAACTAATGGAACCACCGAAACTGAAACAACTGAAGA
AAAAACTGAAGAATCTCTGAAGCGAAAAGATGCCCCCACTGAGGAAGAAG
TAACCAAAGAAGTTACTGAAGAGAAGACAGAAACTACCAAAGCAGAGACC
ACCCCTGAATCAACAACAGAAACCACTGAAAAAACAGAAGAAAAGATGGC
TGATGAAACTGCTCAACAAAAAACTGAAACCCCAGTTGAAAACAAGGCTC
CAGAGGATGAAATCAAGAAGAAGAAAGTTGAAACTGACGAAGCACCAGAA
AAATTAGCAGTTCAAGAAGCCGAAGCATAAGAGACCACCGAAACTACAGA
AGAGACTCCAAAAACTAATGGAACCACCGAAACTGAAACAACTGAAGAAA
AAACTGAAGAATCTCTGAAGCGAAAAGATGCCCCCACTGAGGAAGAAGTA
ACCAAAGAAGTTACTGAAGAGAAGACAGAAACTACCAAAGCAGAGACCAC
CCCTGAATCAACAACAGAAACCACTGAAAAAACAGAAGAAAAGATGGCTG
ATGAAACTGCTCAACAAAAAACTGAAACCCCAGTTGAAAACAAGGCTCCA
GAGGATGAAATCAAGAAGAAGAAAGTTGAAACTGACGAAGCACCAGAAAA
ATTAGCAGTTCAAGAAGCCGAAGCATAAGAGACCACCGAAACTACAGAAG
AGACTCCAAAAACTAATGGAACCACCGAAACTGAAACAACTGAAGAAAAA
ACTGAAGAATCTCTGAAGCGAAAAGATGCCCCCACTGAGGAAGAAGTAAC
CAAAGAAGTTACTGAAGAGAAGACAGAAACTACCAAAGCAGAGACCACCC
CTGAATCAACAACAGAAACCACTGAAAAAACAGAAGAAAAGATGGCTGAT
GAAACTGCTCAACAAAAAACTGAAACCCCAGTTGAAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010444XLOC_010444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018669-exon-sc0000304-1575043694:102509..103148TCONS_00018669-exon-sc0000304-1575043694:102509..103148Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1575043694:102159..102260TCONS_00018669-exon-sc0000304-1575043694:102159..102260Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1575043694:101556..101666TCONS_00018669-exon-sc0000304-1575043694:101556..101666Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1575043694:100590..101423TCONS_00018669-exon-sc0000304-1575043694:100590..101423Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1510915933:102509..103148TCONS_00018669-exon-sc0000304-1510915933:102509..103148Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1510915933:102159..102260TCONS_00018669-exon-sc0000304-1510915933:102159..102260Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1510915933:101556..101666TCONS_00018669-exon-sc0000304-1510915933:101556..101666Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1510915933:100590..101423TCONS_00018669-exon-sc0000304-1510915933:100590..101423Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1491911889:102509..103148TCONS_00018669-exon-sc0000304-1491911889:102509..103148Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1491911889:102159..102260TCONS_00018669-exon-sc0000304-1491911889:102159..102260Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1491911889:101556..101666TCONS_00018669-exon-sc0000304-1491911889:101556..101666Clytia hemisphaericaexon
TCONS_00018669-exon-sc0000304-1491911889:100590..101423TCONS_00018669-exon-sc0000304-1491911889:100590..101423Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018669-proteinTCONS_00018669-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:100590..103148 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
690.928	658.619	303.012	250.928	902.88	697.072	696.435	719.918	712.133	590.55	656.058	629.451	431.8	389.225	540.615	515.158	1025.44	880.295	139.831	193.451	486.121	450.657	877.414	667.483	574.43	668.104	627.968	428.722	471.944	573.48
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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