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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018671 ID=TCONS_00018671|Name=TCONS_00018671|organism=Clytia hemisphaerica|type=transcript|length=2044bp
TTCACAAATAgttaaaaagaataaaaattcataCATCTTTCTCTCTTctt
gttctttaaaaaagatTGGTATCAGTTCAGTAGATGCGCTTTAGATCGAA
CGCGGTCACTACTAACTTGTGGATGGTGACACAACATCTTATGCACATCC
AGTGAACTTTATACTGGATCAAGATTCTTacgaacaaaagaaaaaaacgc
aaaacaataacaaacgaatattgataattgaaatttttaacttttgatat
aaaTCCCCCGACTTGCTGAACCCTTGCATAAAGGACTCGTATTAAAGCCC
CTTTATTGATGTGATCTCTGAACAagattagaattttttaaaatggaTTC
AGGGGGTTGTGTTCATGAATAATTGAGTGTGTATAAAAGAGGAGCTTGGA
TGGTTCATAAGCCTGGTAGGCGTTGTCAACTCAGTACACTTAAGTTTTCC
AGATTGTATTTCCTTTCGAACGTTTCGacatcacaaaaacaaaatgtcaG
ATGCTGATACTACACCCGCAGTCGCTGACTTGAAAATCGAAGACAAAGct
GAGACAGCCCCAGCTGAAGAGGCACCAGCCGCCGCTGCAGAAGACACCCC
AGCAGCTAAAGAAGCCGCCCCAGCAGAAGAAGCTGCATCCACTGACGCCC
CAGCTGAAGAAGCTGCAAGCGAAGAAGCAGCGCCCGCTGAGGAAACGCCT
GCCGCCACCGAATAAAACTCACCATTGTGTTTATAGTTGAATTTATTATT
TACATAATGTATATTTTTCTGTTATAAAGTTTCTATACATCAATATCAGT
GCTTGATTTGATACCAAAAAGTTGTATATATACAAATTACATATGAAAAA
CTTCGAATAATaagattaaaatttaaaaaaatactgatttttttccattt
caatGTTCCTTTTTAATTATTTAGCCTCGCAGAGGTCTTTTTTAGGCCTG
GCGAATGGCGAAATTCGCTGGCTCGAAACACGAAATAAATTAGAATTTTT
CCACGAATTTTAACCACGCCAGGCTATTTTTGGAACGGAAGTGGATGTAA
CACCACAATTTCGTTATATCCACGTCAGTTTGAGAGATTCCCAATAGCAT
CGTCTttcttaaggcttggggacacgagaggTTTTTTTCGCGttagtgca
atgcaacatgctccatcccacaaacacaaaaaaaaagtgtctcatggttt
cttttttgttttgtttcacaggacaaaaagtgagggaaatacccaaaaga
ttGATGATCACCTCGATCATCAATGCCATCGGGAGCAAAAGGATGACGTT
TTTCAATGATCAACTCTACGTATCATCATCTCGGTCCATTTAAGGGATTT
ACTTTGACCCAACCAATCATTCCAGAAAATTCCTTTGAATTCTAAGCCAA
CATTCTCTTGTGGTTGGtaaaacccgttgaaatttattttagCGCAATTA
TTGTACCAAAAACCACCTCTCTTGTAATTGAGATTTCGAGCCACGCATGA
GCAAGAAAGACAATTGCCTGAGCAAGAAAGACAATTGTCATTGTCTTTAT
CTCTTGTCGAGAAAAAATGACCGAAATGATATGAGAGTGAATCTGTTCCT
TCCATGAAGTCACCACCTAACAATTGATACTTGTCTGCTTCGCTTTTTAC
CTCAAAATATCCATATTTGGCATATTTTGTCTCATTCGTAAATCTACCGG
CGTGGATATACACTTCATGCTTTTCTGAGCTTGTTATTTGGTGTAGAAAT
TCGTTACCAAGCCAAAATTCACCCGACGGTTCTCCANTACACTTCATGCT
TTTCTGAGCTTGTTATTTGGTGTAGAAATTCGTTACCAAGCCAAAATTCA
CCCGACAGTTCTCCGAAACCATTTTTATAGCCTTCCCACTGAGGCTGATA
AAAATCAACACTGCCATCCATGCGGCGCTGAAACACTAGCCAACCACCAC
CATCATTGTCCATATTGCATCTGACGTCTTTAAGACCACTAGCCAATGTG
ATTTGATATACTCCTGGtgaaagaaatttctttgaatGAAATTC Run BLAST on NCBI transcript from alignment at sc0000304:137031..139622- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018671 ID=TCONS_00018671|Name=TCONS_00018671|organism=Clytia hemisphaerica|type=transcript|length=2592bp|location=Sequence derived from alignment at sc0000304:137031..139622- (Clytia hemisphaerica)
TTCACAAATAGTTAAAAAGAATAAAAATTCATACATCTTTCTCTCTTCTT
GTTCTTTAAAAAAGATTGGTATCAGTTCAGTAGATGCGCTTTAGATCGAA
CGCGGTCACTACTAACTTGTGGATGGTGACACAACATCTTATGCACATCC
AGTGAACTTTATACTGGATCAAGATTCTTACGAACAAAAGAAAAAAACGC
AAAACAATAACAAACGAATATTGATAATTGAAATTTTTAACTTTTGATAT
AAATCCCCCGACTTGCTGAACCCTTGCATAAAGGACTCGTATTAAAGCCC
CTTTATTGATGTGATCTCTGAACAAGATTAGAATTTTTTAAAATGGATTC
AGGGGGTTGTGTTCATGAATAATTGAGTGTGTATAAAAGAGGAGCTTGGA
TGGTTCATAAGCCTGGTAGGCGTTGTCAACTCAGTACACTTAAGGTGGGT
AGATGAAGTCAAATTTTTACTACTTTTAAATTTTCAGAGCGTTGGCTTTC
TCTGAGAGACTTTAAAAATTCGACATTTTTCTTTGTTTGAAGATCCCATC
TATTTGGGAATATTTTTATCAGTTGTTTTTCCTTGATGAGATGTTGAGAG
GTTTACTGTCACTCAGAGGAGACAGCCAGAAATCTTTATGATGTTGTTGT
AAAATAATAATTGGATATCAGTCAGTACTGTTTTAAGCGATTATTTTTGT
TGAAATAATATCTTATCACTGAGGGTTTTTTCTGCTCTTAGAACTTGAAA
TTTCGAAATTTCAAAACTGTGAATATCCACAGAGTTCCATATTCCAAAAT
TTTTTTGAACTTAGCTATTTCTTTATATAATTTCTCCCCGTTTTCCTTTC
AGTTTTCCAGATTGTATTTCCTTTCGAACGTTTCGACATCACAAAAACAA
AATGTCAGATGCTGATACTACACCCGCAGTCGCTGACTTGAAAATCGAAG
ACAAAGGTACATTTTCTGTTTTCTTTCTCTCCGTATGATGAATAGTCAGT
CCATAGTCAACCCCCTGAATTATTGTACTGTAATTTCATTTTGGATTTTA
TTCGAGTGATTTTTTGATATTCGGCTATATGAATTTTTAATTTTAGCTGA
GACAGCCCCAGCTGAAGAGGCACCAGCCGCCGCTGCAGAAGACACCCCAG
CAGCTAAAGAAGCCGCCCCAGCAGAAGAAGCTGCATCCACTGACGCCCCA
GCTGAAGAAGCTGCAAGCGAAGAAGCAGCGCCCGCTGAGGAAACGCCTGC
CGCCACCGAATAAAACTCACCATTGTGTTTATAGTTGAATTTATTATTTA
CATAATGTATATTTTTCTGTTATAAAGTTTCTATACATCAATATCAGTGC
TTGATTTGATACCAAAAAGTTGTATATATACAAATTACATATGAAAAACT
TCGAATAATAAGATTAAAATTTAAAAAAATACTGATTTTTTTCCATTTCA
ATGTTCCTTTTTAATTATTTAGCCTCGCAGAGGTCTTTTTTAGGCCTGGC
GAATGGCGAAATTCGCTGGCTCGAAACACGAAATAAATTAGAATTTTTCC
ACGAATTTTAACCACGCCAGGCTATTTTTGGAACGGAAGTGGATGTAACA
CCACAATTTCGTTATATCCACGTCAGTTTGAGAGATTCCCAATAGCATCG
TCTTTCTTAAGGCTTGGGGACACGAGAGGTTTTTTTCGCGTTAGTGCAAT
GCAACATGCTCCATCCCACAAACACAAAAAAAAAGTGTCTCATGGTTTCT
TTTTTGTTTTGTTTCACAGGACAAAAAGTGAGGGAAATACCCAAAAGATT
GATGATCACCTCGATCATCAATGCCATCGGGAGCAAAAGGATGACGTTTT
TCAATGATCAACTCTACGTATCATCATCTCGGTCCATTTAAGGGATTTAC
TTTGACCCAACCAATCATTCCAGAAAATTCCTTTGAATTCTAAGCCAACA
TTCTCTTGTGGTTGGTAAAACCCGTTGAAATTTATTTTAGCGCAATTATT
GTACCAAAAACCACCTCTCTTGTAATTGAGATTTCGAGCCACGCATGAGC
AAGAAAGACAATTGCCTGAGCAAGAAAGACAATTGTCATTGTCTTTATCT
CTTGTCGAGAAAAAATGACCGAAATGATATGAGAGTGAATCTGTTCCTTC
CATGAAGTCACCACCTAACAATTGATACTTGTCTGCTTCGCTTTTTACCT
CAAAATATCCATATTTGGCATATTTTGTCTCATTCGTAAATCTACCGGCG
TGGATATACACTTCATGCTTTTCTGAGCTTGTTATTTGGTGTAGAAATTC
GTTACCAAGCCAAAATTCACCCGACGGTTCTCCANTACACTTCATGCTTT
TCTGAGCTTGTTATTTGGTGTAGAAATTCGTTACCAAGCCAAAATTCACC
CGACAGTTCTCCGAAACCATTTTTATAGCCTTCCCACTGAGGCTGATAAA
AATCAACACTGCCATCCATGCGGCGCTGAAACACTAGCCAACCACCACCA
TCATTGTCCATATTGCATCTGACGTCTTTAAGACCACTAGCCAATGTGAT
TTGATATACTCCTGGTGAAAGAAATTTCTTTGAATGAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018671-exon-sc0000304-1575043694:139179..139622 | TCONS_00018671-exon-sc0000304-1575043694:139179..139622 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1575043694:138667..138770 | TCONS_00018671-exon-sc0000304-1575043694:138667..138770 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1575043694:137031..138526 | TCONS_00018671-exon-sc0000304-1575043694:137031..138526 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1510915933:139179..139622 | TCONS_00018671-exon-sc0000304-1510915933:139179..139622 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1510915933:138667..138770 | TCONS_00018671-exon-sc0000304-1510915933:138667..138770 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1510915933:137031..138526 | TCONS_00018671-exon-sc0000304-1510915933:137031..138526 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1491911889:139179..139622 | TCONS_00018671-exon-sc0000304-1491911889:139179..139622 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1491911889:138667..138770 | TCONS_00018671-exon-sc0000304-1491911889:138667..138770 | Clytia hemisphaerica | exon |
| TCONS_00018671-exon-sc0000304-1491911889:137031..138526 | TCONS_00018671-exon-sc0000304-1491911889:137031..138526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:137031..139622 - |
Blast
BLAST of TCONS_00018671 vs. Swiss-Prot (Human)
Match: ANGP2 (Angiopoietin-2 OS=Homo sapiens GN=ANGPT2 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.777e-19 Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = -2
Query: 1309 GEPSGEFWLGNEFLHQITSSEKHEVYIHAGRFTNETKYAKYGYFEVKSEADKYQ--LLGGDFMEGTDSLSYHFGHFFSTRDKDNDXXXXXXXXXXXXXCVARNLNYKRGGFWYNNCAKINFNGFYQPQENVGLEFKGIFWNDWLGQSKSLKWTEMMIRRVD 1785
G PSGE+WLGNEF+ Q+T+ +++ + IH + Y+ Y +F + SE Y+ L G G S G+ FST+D DND C + + GG+W++ C N NG Y PQ +F GI W W G SLK T MMIR D
Sbjct: 347 GNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKC------------ICKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKFNGIKWYYWKGSGYSLKATTMMIRPAD 495 HSP 2 Score: 80.4925 bits (197), Expect = 8.328e-16 Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = -1
Query: 1796 SPGVYQITLASGLKDVR--CNMDNDGGGWLVFQRRMDGSVDFYQPQWEGYKNGFGELSGEFWLGNEFLHQITSSEKH 2020
+ G+Y +T + ++++ C+M+ GGGW + QRR DGSVDF Q W+ YK GFG SGE+WLGNEF+ Q+T+ +++
Sbjct: 294 TNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDF-QRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRY 369
The following BLAST results are available for this feature:
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