TCONS_00018679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018679
Unique NameTCONS_00018679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018679 ID=TCONS_00018679|Name=TCONS_00018679|organism=Clytia hemisphaerica|type=transcript|length=488bp
GATCAAAGATTGAATTTTTCATTGGTGAATCCAAAGAACAATCGTTAAGA
AGCTGCTCATTCTCAAGACTTGGGTATGTGCAATTAGCACCGAATGCAGA
AGCCAATTATCAGGCTCGCGAATTGAAGTCGGTGACCCTGAACAAGGATG
GAATATTTGTTAAGATACTGGTCCATCGCAACCATATCAATAAACTCAAC
GTTTATAATCAGGCTTGGTAGCTGTCAACATTCTAGGATACCAACTTTCA
AAGGAATTTGAAGGGCAACACCCGCAAGAGAAAACAGAAGATGTTGtgaa
tttttacatgaatcaAGTGACATCAGAAGATGAAGTGGTCAATACCTCCA
AACTTAATGCCTCTCCTCGGTATGAGTATGGTAAAGAAATCTCCCCTTAT
GATGACCTGGCCTTCGACATGTACCAGGACTCAGAAACTGCCCAACTCAT
CAGAAAACTCGATGAAAAGAAACATCAAGCCATCATTG
Run BLAST on NCBI

transcript from alignment at sc0000304:169675..172527-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018679 ID=TCONS_00018679|Name=TCONS_00018679|organism=Clytia hemisphaerica|type=transcript|length=2853bp|location=Sequence derived from alignment at sc0000304:169675..172527- (Clytia hemisphaerica)
GATCAAAGATTGAATTTTTCATTGGTGAATCCAAAGAACAATCGTTAAGA
AGCTGCTCATTCTCAAGACTTGGGTATCAAAACTTTTCTTTCTCATTCTC
TCTCCATACAGTTGACTCATCATATTAACNAGACTTGGGTATCAAAACTT
TTCTTTTTAATTCTCCATACAGTGTTGAGACATCTTCTTGATTTGATATT
TTTAGATTTTCCTTTAATATTGTCGCTGGAAAATAAAAAAGCCTTATGTC
CATTTTTGGTGTTTTGAGAAAATTGCAATCAAAGTATTTCTATACCAATG
CCCTAAAGTATTGCAATGATTAAAGTTGCTTGCTAACTTTTTTAAAGCTT
CATCCTTTTGTTTGTTAAGCTTATTATTTTTGACGTAGAAAGACACATTT
TATCCTCTAAAATAGCCAACCAAGGTCTTTGAGATCGTTTCAAGTTTAAA
AAATATTGAACAATTAATGTAAAAAAGATGGACAATAGCTTAGACCTAAA
GCTATCTATTCCAAAATTCTACTTTTGTTAACTTTAATTTCAAGCAACGA
ATGATGATTGGTTATGATGCATTGCAGTAACCTCTAGAATATCTTGAGCA
AAGCTTATCTGCTCTTTACCTTTTAATTCATTCTGTACTATAGATTTCAT
GTTTTCATTTTCCATCCAAGGTATGTGCAATTAGCACCGAATGCAGAAGC
CAATTATCAGGTAAATATATTCATTTCTTTCCGAGACATTTGATTTCCAT
AAAGATATATGAAAATTATAATTTATAGTGTATTCTCCTTAACAGAAATC
GAAATTTGTTTATTTACAACACCTGAAGACGACAAGAACTTTATTTGAGT
TAAGGGAACAGTCGAGTTATAGAGGTTCGAGTTATGGAGACACTACTGTA
ATAAGGAACATAAAATGTAACTGTAATGTAACTTCCATTTCCTTTCCATA
AATGTAACTGTAATGTAACTTCCCTTTCTTCTTTCCATTGAAAGGCTCGC
GAATTGAAGTCGGTGACCCTGAACAAGGATGGAATATTTGTTAAGATACT
GGTCCATCGCAACCATATCAATAAACTCAACGTTTATAATCAGGTGGAAT
AATTTGATTGGATGGTTGCTTTTATCGTATATCGATTTTGTTGAATCTAA
TAAAATGAGAACTTCAAGAGTCCTGTTGACAACTTTATTTTTTCGATTTT
CTCTGAAATCATTGATGCTATCATCTAGATTTAATAACGTTTACCATATC
TTTTCAGGTAGGCTTGGTAGCTGTCAACATTCTAGGATACCAACTTTCAA
AGGAATTTGAAGGGCAACACCCGCAAGAGGTATAGGATTTTAATAATAAA
CATTTTGATGTATAGTCTGATGCGATAGAAACAACGATATAATCAACTCT
TAGGTGATTAAGAATGAAAAAGCATCATAATTTTTAAGAGGATAAGAATC
ATATTGGATTTTGGAAAGATTTTAACACAAGATTTTTCAAGTTTGATTGG
CCAGAATTCGAGAGTGGAACAAACTACAAATTTCGACTCTTTTGACTTTT
CAGAAAACAGAAGATGTTGTGAATTTTTACATGAATCAAGTGACATCAGA
AGATGAAGTGGTCAATACCTCCAAACTTAATGCCTCTCCTCGGTATGAGT
ATGGTAAAGAAATCTCCCCTTATGATGACCTGGCCTTCGACATGTACCAG
GTAATTACTTTGTTTTATCCACTTAATATTCGAACTGAGCGTTTCCGAAA
TTCTTTTTATCCTTACTGCATATCACAGTGGAATATTCTGGATGGTCGTA
TAATAGATCTTCCTTCAGTATCTACCTTCAAAAAAGCAATCTTCAAGCTT
CTAAGGCCCAAACCTTCTCCTGTTTTTGGAGCTCGTGACAACCAGGATTG
GTCCTTCTCAATAGTCTTTGAGTAGGATTTAGTCACCTCAATGAACATAA
ATTTAGCCACAGTTTTTGTGACACCTTAGATCCTTTTTGTGCGTGTAGGA
CAAAATTCTATCGAAAACTCTCAACACTTTCTTTTCCACTGCTCTATTTA
CTCTCAGGCAAGACATCTTTTGTTCAACAAACTTCTGAACCAAGACATAA
ATATTTATCCACTAAGCCCTCCTAAGCTCTTCAACATTTATTTGTACGGT
GATCCAGCATTACTTTTCAACATAAACAACTCAATGATTAATCTTGCCAT
TTGATTATTTGACAATTTAAATTATAACTTATTTGGCCTTGACTGATTCT
AGCATAAGTCAACACAAGATCGACCAGCAAAACTTTAAGCTTTGATAAAG
TTTGTCAGTCCTTTGGTTGCCATCTTTAGAGCTGTATTTTTCAACATTTA
GAGCTTTTATATTGTTATTATACACTTAAAATGACAAACAAAATAACAAG
AAGCATTTTTTGTTTTTGATAAAAAACTATATATTCGACCTCACTCACAA
GAGTCATCATCAGAGTAAAAATCTAATACAGAATGAGAATTCTAAAATCA
AAATTTACAGAAAAAAGCTAATTAAAATGTTATAAAAACGATGTGTAAAA
ATCTAAAATGATACCCATGGGACGCTAAACTGAGAAAACACTGAGACTAA
ATCGATAGCACAATAAAAGAGAGTAATTATCAAAGGAACAATATGCCTAT
GTCGTAAAAAGTTGTAAAGTTTTGAATGAATTTTGAACGTTCAATGAAGG
TTTTTGTTCAGTGATTAAAAAAAAGTGATTAACACTTAAAATGATTGATA
ATATTGTCTTGTTGTTGTTTATATTACAATCATTCATTTTAGGACTCAGA
AACTGCCCAACTCATCAGAAAACTCGATGAAAAGAAACATCAAGCCATCA
TTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010448XLOC_010448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018679-exon-sc0000304-1575043694:172455..172527TCONS_00018679-exon-sc0000304-1575043694:172455..172527Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1575043694:171818..171857TCONS_00018679-exon-sc0000304-1575043694:171818..171857Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1575043694:171435..171533TCONS_00018679-exon-sc0000304-1575043694:171435..171533Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1575043694:171199..171266TCONS_00018679-exon-sc0000304-1575043694:171199..171266Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1575043694:170828..170974TCONS_00018679-exon-sc0000304-1575043694:170828..170974Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1575043694:169675..169735TCONS_00018679-exon-sc0000304-1575043694:169675..169735Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1510915933:172455..172527TCONS_00018679-exon-sc0000304-1510915933:172455..172527Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1510915933:171818..171857TCONS_00018679-exon-sc0000304-1510915933:171818..171857Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1510915933:171435..171533TCONS_00018679-exon-sc0000304-1510915933:171435..171533Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1510915933:171199..171266TCONS_00018679-exon-sc0000304-1510915933:171199..171266Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1510915933:170828..170974TCONS_00018679-exon-sc0000304-1510915933:170828..170974Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1510915933:169675..169735TCONS_00018679-exon-sc0000304-1510915933:169675..169735Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1491911889:172455..172527TCONS_00018679-exon-sc0000304-1491911889:172455..172527Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1491911889:171818..171857TCONS_00018679-exon-sc0000304-1491911889:171818..171857Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1491911889:171435..171533TCONS_00018679-exon-sc0000304-1491911889:171435..171533Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1491911889:171199..171266TCONS_00018679-exon-sc0000304-1491911889:171199..171266Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1491911889:170828..170974TCONS_00018679-exon-sc0000304-1491911889:170828..170974Clytia hemisphaericaexon
TCONS_00018679-exon-sc0000304-1491911889:169675..169735TCONS_00018679-exon-sc0000304-1491911889:169675..169735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:169675..172527 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.494652	0.492834	0	1.55182	3.81123	0	2.67084	1.7661	0	0.622084	0	0.443722	0.565756	0.266856	0.586581	0.427253	2.37532	0	0	1.02066	0	0	0.686174	0	0.688149	0.857262	0	0	0	0.421297
Blast
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BLAST of TCONS_00018679 vs. Swiss-Prot (Human)
Match: CE104 (Centrosomal protein of 104 kDa OS=Homo sapiens GN=CEP104 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.019e-25
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:    3 SKIEFFIGESKEQSL---RSCSFSRLGYVQLAPNAEANYQARELKSVTLNKDGIFVKILVHRNHINKLNVYNQ 212
            SKIEF+I ES  +     ++  F RLGYV L  N +   +ARELKSV ++  G F+K++ H+NH+NK N+YNQ
Sbjct:   70 SKIEFYISESLPEYFAPYQAERFRRLGYVSLCDNEKTGCKARELKSVYVDAVGQFLKLIFHQNHVNKYNIYNQ 142

HSP 2 Score: 62.003 bits (149), Expect = 3.019e-25
Identity = 38/91 (41.76%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:  212 GLVAVNILGYQLSKEFEGQHPQEKTEDVVNFYMNQVTSEDEVVNTSKLNASPRYEYGKEISPYDDLAFDMYQDSETAQLIRKLDEKKHQAI 484
             LVA+NI+G     +F  +      E +++ Y+    SED  +  +    S   +Y   ISP DDLAFDMYQD E AQ+IRKLDE+K +A+
Sbjct:  144 ALVAINIIGD--PADFSDESNTASREKLIDHYLGH-NSEDPALEGTYARKS---DY---ISPLDDLAFDMYQDPEVAQIIRKLDERKREAV 225
The following BLAST results are available for this feature:
BLAST of TCONS_00018679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CE1043.019e-2547.95Centrosomal protein of 104 kDa OS=Homo sapiens GN=... [more]
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