TCONS_00018691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018691
Unique NameTCONS_00018691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018691 ID=TCONS_00018691|Name=TCONS_00018691|organism=Clytia hemisphaerica|type=transcript|length=826bp
ACAAATAAAAAGTCAGCACAATCATGTATAGACTGCTGAGTAAAATCGAA
TATGTTTATTAATCAAAAGGTCTTTTTTACTCATCTATGATATTATACAT
TAAACACCTCTAATACGAAATCCGTTTGGTTTATCTTGCATTAGAGATGA
AAAGAAGAGAAACTTGTGTTATTCATGTCAACATAGAATTGAGATAATTT
GACCGTCATTCTTGCGGTTGTAATTCATAGAAACTCTCATTCGTCATTTA
GACTGTCAAGATCAGTTTATACAGTAATGATCTAAGATCTAGAGAGAGgg
agatatttgagacatttTATGGAGATATCCTTCTAAGTACTCAGGATGAC
AAGGTATCTGGTAAGGAAGCAAATAATCGGTTTGGCTTTGGTTGTTTTTG
TTTATGCTGGCTTATTGCAAGGTCAAGTTGTGGACATCAAAACGAAGAGC
TTTGGATGTTATCTCGTCGGTGACAGTTCCACAATTACTGTCAACGGTAC
TGGATACCTCTTCATGCAAGATGGTATCAGTGTGCTCACTATACAACATA
CCTCCCCTGATACACCGCCTCTCATTGAGATCACGACAATCGGACCTGCA
TCGTTTCACGACGACAGCGTTTTATCACAACTGAACTCAACCCTGACATC
AAGGCTGACAAAGGAAGGGACAGTGCTGGTGATTGCCTTACAATCAACTT
GTTTCGATGAATATGCTGGCTGGTTGAAACTGGTTCAATCTGTCCCTAAT
CTTGATATCGGGAAAAATGATTGGGACGACGACATATCAGCAGGTGTTAT
CATTGGTTGTTATAAGAAATGTCCGG
Run BLAST on NCBI

transcript from alignment at sc0000304:218871..220541-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018691 ID=TCONS_00018691|Name=TCONS_00018691|organism=Clytia hemisphaerica|type=transcript|length=1671bp|location=Sequence derived from alignment at sc0000304:218871..220541- (Clytia hemisphaerica)
ACAAATAAAAAGTCAGCACAATCATGTATAGACTGCTGAGTAAAATCGAA
TATGTTTATTAATCAAAAGGTCTTTTTTACTCATCTATGATATTATACAT
TAAACACCTCTAATACGAAATCCGTTTGGTTTATCTTGCATTAGAGATGA
AAAGAAGAGAAACTTGTGTTATTCATGTCAACATAGAATTGAGATAATTT
GACCGTCATTCTTGCGGTTGTAATTCATAGAAACTCTCATTCGTCATTTA
GACTGTCAAGATCAGTTTATACAGTAATGATCTAAGATCTAGAGAGAGGG
AGATATTTGAGACATTTTATGGAGATATCCTTCTAAGTACTCAGGATGAC
AAGGTATCTGGTAAGGAAGCAAATAATCGGTTTGGCTTTGGTTGTTTTTG
TTTATGCTGGCTTATTGCAAGGTCAAGTTGGTAAGTTGATTTGATTTGAT
TAGTTACTTATGATAAAGTCATATTTTTTCTTTATCAGCATCCGTGTTGT
ATTCCCTATGATAGACCTGGAGAGTTTAATTGACGTCTTTTTCAGTTGCC
AATCTTTGAGATTTTTGCCAACTGTCATACCACATACATTCTATCCACGG
TGAGGAAAACGGAGTTGCCAACAAGGGTTACAGAGTGACTACTGATTCAC
CAAATTGTAGAGTCATACTATATATCTTTTCCTTCCAGTGGACATCAAAA
CGAAGAGCTTTGGATGTTATCTCGTCGGTGACAGTTCCACAATTACTGTC
AACGGTACTGGATACCTCTTCATGCAAGATGGTATCAGTGTGCTCACTAT
ACAACATACCTCCCCTGATACACCGCCTCTCATTGAGATCACGACAATCG
GACCTGCATCGTTTCACGACGACAGCGTTTTATCACAACTGAACTCAACC
CTGACATCAAGGTTACTGTTTTATTATTCAATCTTCTAGCCGACTTAGAG
CACCAAGGAAACCAAGAACCTTAAATATCAATGAAGGAAGACATTGAATT
TTTTGGGCTGAATCTTTAATTATCCCCCCTCAGCCCCTTGAAATTGTGAC
TCAAAATTTGAAGCCCCACCCATTAATAGCAAAGGATTTCCATTCCCACT
GGTACTTAACATCATAAATTTTCCCCCAGTTGGAAAAAAGTCATTTCAAA
AACACTTAGACAGGGGCGCTACAGTTAAAAAGTCTGATAAAACGTAAATA
CTCCACGCAAGCTTACCTCAATACATCATTTCTTCCAATAGGCTGACAAA
GGAAGGGACAGTGCTGGTGATTGCCTTACAATCAACTTGTTTCGATGAAT
ATGCTGGCTGGTTGAAACTGGTTCAATCTGTCCCTAATCTTGATATCGGG
AAAAATGATTGGGACGACGACATATCAGCAGGTTGGTTAGATTCCTAATG
ATTGGTCAATTTTGGTGCTGTATTCATGCTAGCTACCTTGTTCTCTCCTA
AAGTCAGGAACATCCCTGTTTCACTAGCTGGAGGATTTGATTAATTTAGT
GAAATGGTCTGCATGAAAGTTCATTCCAAACAAAAGTTTTCTAGCATGGC
CTTGTTGGGAGTTTTTTTAAACACTGACTATTATAAGGTATATTGCACTT
TAATCATCGTTACACTTTATATACCCACATCACCTTAGGTGTTATCATTG
GTTGTTATAAGAAATGTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010452XLOC_010452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018691-exon-sc0000304-1575043694:220112..220541TCONS_00018691-exon-sc0000304-1575043694:220112..220541Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1575043694:219631..219853TCONS_00018691-exon-sc0000304-1575043694:219631..219853Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1575043694:219161..219300TCONS_00018691-exon-sc0000304-1575043694:219161..219300Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1575043694:218871..218903TCONS_00018691-exon-sc0000304-1575043694:218871..218903Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1510915933:220112..220541TCONS_00018691-exon-sc0000304-1510915933:220112..220541Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1510915933:219631..219853TCONS_00018691-exon-sc0000304-1510915933:219631..219853Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1510915933:219161..219300TCONS_00018691-exon-sc0000304-1510915933:219161..219300Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1510915933:218871..218903TCONS_00018691-exon-sc0000304-1510915933:218871..218903Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1491911889:220112..220541TCONS_00018691-exon-sc0000304-1491911889:220112..220541Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1491911889:219631..219853TCONS_00018691-exon-sc0000304-1491911889:219631..219853Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1491911889:219161..219300TCONS_00018691-exon-sc0000304-1491911889:219161..219300Clytia hemisphaericaexon
TCONS_00018691-exon-sc0000304-1491911889:218871..218903TCONS_00018691-exon-sc0000304-1491911889:218871..218903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:218871..220541 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	7.46986e-10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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