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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018692 ID=TCONS_00018692|Name=TCONS_00018692|organism=Clytia hemisphaerica|type=transcript|length=1974bp aaacaaacaaaaatatatttggagtaaaaaattgaagaaatctCATTCGA AGATGAAGAGGGTTTCAACATTACAGTATGGTTGCTATCTACTTCTGCTT ATTCACTTCATACACGTGACAATGAGTTGCCACATCTCACCCAACGACAC TGTTGtTTCAATTGAAGCCTTATCTACCGGTTGTCTTGGCTCACGGACGC CCAACAGTTCCATTAAAATCAACGGAAAAGAATGCCGGAACTTATCTAAA ACCGGAGTCAATCTTCTCATTATTTCACCGGACAGAACACTTAAACGATA CAGCATAAATACACCGCTTATAAGCTTACGGCGCCGAATACGAGTTTTAA AATACTTCGAAAAGAATGCGCTTCAAAATGGTAGCGTAGTCGTGATTGTA TCGCAAAACGCATGTTTTTTGAATTACGCTAACTGGCCAAACATGATCAA GTATGCAGCCAAACTCAATGTCGGTCATTTTGAATGGAATTCTCACTTCC ATACGGGTCTAATGATTGGTTGTCATGGCTACTGTCCAGATTACGTCATT AGTGGGAAATTACCGTTCACGAAATTGAGTCGAGATGATGACGAGTTCAA ATACAACGTTGACTTCGTTTTACCAGGTTATAACGGATCGCATTTGATGA CCACCACTACCGAAAAACCGGAAGAGAAGGGAAGAAGGGAAGGTGAAAAA GGAAGAACAATGAAAGATCAATCAATCATGAAACTCATCATCATTATCGC TCCAATCGCcatcattttattgtttgtcTGTGTCATTTCAATGGCTTGTA TACGAAAACATCGTGGAAGCATTTTTGGTTCCTGCAAAAAGCGGCTGTCC GCTGATTCCCCCTGCCAAGAGGATATTGAACCGGACGAGCTGTCCGGTAT GTATGCCGGGCTAAATATGAAGCGTCCCTCAGCTTTACCGAACACATATG AAGCATTGCAAAAGATGAGTGTTCAATACGAGAAAATTGACTCGCCATTA GTtttcaaaatgactgaaaataaaCCATCTCTTTCCGAGATTGAAGAAAG TGTTTACCAGCCTGCATCCGATATTGCTCCGCCGCACAGGCTAAGGACTG GGACGGAGTTATCATACAGCCCGCGATTGCGCACTAGTACCGAACTCTCT GTTGTCAGTGTCGGGCTTGGATCGAGCCAGAATATTTTCCGCAAAATCTC AGCTGAAGTGTTAAGTTTGAATCCGAAAAATCCGACTGATGACGAAGATG AATCCGATACCCGATTTGCCAATTATCTGGAGTTAGAAGATTCCGTCATC TACAAAGCTCCTTCCAGTGTTCCGAAATTTGAAGCACCAAAATCCATCCC GCAAAATATAGAACGAGATTCGTACGTCGAGATGGAAGAAGCGTGCTATG AGGATGCAGATGTGGATAATATTTACGCCCCACTTGAGGCGTCTTCTGTG GGCGGCAATGATGAAAATGCTGCGGGTGAGGTATATGAACAACTTGTGTT TACGTAAAAACAGACTGTGATCTGGTGAGAGGGTTGGAATACCAAAACGG TAAAAATGTTGCATGATTTATATTATGAAATCAACATGGATGAAAAGTTA ACAATGAATGCGCCTAAAGATTCATACACTGCTCAACTATTTGGAACTAT TACTGATATTCATCTGTACAAGTGACCAATTTTAGCTGAACTGGCGCTAC AATCGAAGTGACTATTAAAGGTTTCAATAAACGAAGATGTTTATGCTAAA GGAAACCCTGTACTGTAGTATAAACAAACTTTCAACGATTTGTCTCTATG AAGATTTAGAAAATGGTGTATTTTAATGTTTGTAGAAATTTTTATGATGT ATAAATTGTAGGTAGTATTTTATCCaatttttagttcaatttttaatctA AAGTATTCTTATTTTGTAAAACATCTTAAAAACTTTGTTCAATTCATTGC TCTACCCGAATCATCAACACCAGA Run BLAST on NCBI protein sequence of TCONS_00018692-protein >TCONS_00018692-protein ID=TCONS_00018692-protein|Name=TCONS_00018692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
NKQKYIWSKKLKKSHSKMKRVSTLQYGCYLLLLIHFIHVTMSCHISPNDT VVSIEALSTGCLGSRTPNSSIKINGKECRNLSKTGVNLLIISPDRTLKRY SINTPLISLRRRIRVLKYFEKNALQNGSVVVIVSQNACFLNYANWPNMIK YAAKLNVGHFEWNSHFHTGLMIGCHGYCPDYVISGKLPFTKLSRDDDEFK YNVDFVLPGYNGSHLMTTTTEKPEEKGRREGEKGRTMKDQSIMKLIIIIA PIAIILLFVCVISMACIRKHRGSIFGSCKKRLSADSPCQEDIEPDELSGM YAGLNMKRPSALPNTYEALQKMSVQYEKIDSPLVFKMTENKPSLSEIEES VYQPASDIAPPHRLRTGTELSYSPRLRTSTELSVVSVGLGSSQNIFRKIS AEVLSLNPKNPTDDEDESDTRFANYLELEDSVIYKAPSSVPKFEAPKSIP QNIERDSYVEMEEACYEDADVDNIYAPLEASSVGGNDENAAGEVYEQLVF T Run BLAST on NCBI transcript from alignment at sc0000304:221526..224149- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018692 ID=TCONS_00018692|Name=TCONS_00018692|organism=Clytia hemisphaerica|type=transcript|length=2624bp|location=Sequence derived from alignment at sc0000304:221526..224149- (Clytia hemisphaerica) AAACAAACAAAAATATATTTGGAGTAAAAAATTGAAGAAATCTCATTCGA
AGATGAAGAGGGTTTCAACATTACAGTATGGTTGCTATCTACTTCTGCTT
ATTCACTTCATACACGTGACAATGAGTTGCCACATCTCACCCAACGACAC
TGTTGGTAAGTAATACTCTCCAGCCCAGAATGCGAAATTCCCTGCAAGAA
ATGCTAAATGGATTTATCTTAGATGTTCTTGATACGACCCTTAGTAATCG
GCGTCTTTGCTCGTAATTTTCCCTAAGATTTTGGTCACATTTGAACATCT
TGTTTTTATCGGTTTTTATAAAAAAGCTAAAAGTAGAGGCTATGAAAGAT
TTTACTGTGAAAATTCTTCCTATCATCTTATATGATTTCATTTTGTTCAA
TTTCAATTTCAATTCAATTATTATTTTCTTTTTTCCAGTTTCAATTGAAG
CCTTATCTACCGGTTGTCTTGGCTCACGGACGCCCAACAGTTCCATTAAA
ATCAACGGAAAAGAATGCCGGAACTTATCTAAAACCGGAGTCAATCTTCT
CATTATTTCACCGGACAGAACACTTAAACGATACAGCATAAATACACCGC
TTATAAGCTTACGGCGCCGAATACGAGTTTTAAAATACTTCGAAAAGAAT
GCGCTTCAAAATGGTAGCGTAGTCGTGATTGTATCGCAAAACGCATGTTT
TTTGAATTACGCTAACTGGCCAAACATGATCAAGTATGCAGCCAAACTCA
ATGTCGGTCATTTTGAATGGAATTCTCACTTCCATACGGGTCTAATGATT
GGTTGTCATGGCTACTGTCCAGATTACGTCATTAGTGGGAAATTACCGTT
CACGAAATTGAGTCGAGATGATGACGAGTTCAAATACAACGTTGACTTCG
TTTTACCAGGTAGCTACCATAAGATTTTCAAGGGTTGATTTTTAGAGAAC
TTTTAAAATTCGCAGCAGCGTGTTAATTAGAACAAGCCTGGGAGGCAACT
TTGAGAAATTAGGATCTATGCTTCCCCTTACTGGGGAAAACACCTTTTAT
AAATGACGCAAAATATTTTGGAGATATTTTTCCTTTTTGTTCTTATTTTA
TCTGCCAGTTGTGGCTAGGGGCGTCGAAGTTAGTGGTCTGAGGAGAAAGA
TTTGGGAATCACACTACTGTTCTCAAAAGGTCTTGAATGAAATATACGTA
TATCTCAAATACGACTTCATCCGAAACACCCCTGCTAACCAAATTTGAAT
TGCTATTAAAATTTCGTGCTTTTCAGGTTATAACGGATCGCATTTGATGA
CCACCACTACCGAAAAACCGGAAGAGAAGGGAAGAAGGGAAGGTGAAAAA
GGAAGAACAATGAAAGATCAATCAATCATGAAACTCATCATCATTATCGC
TCCAATCGCCATCATTTTATTGTTTGTCTGTGTCATTTCAATGGCTTGTA
TACGAAAACATCGTGGAAGCATTTTTGGTTCCTGCAAAAAGCGGCTGTCC
GCTGATTCCCCCTGCCAAGAGGATATTGAACCGGACGAGCTGTCCGGTAT
GTATGCCGGGCTAAATATGAAGCGTCCCTCAGCTTTACCGAACACATATG
AAGCATTGCAAAAGATGAGTGTTCAATACGAGAAAATTGACTCGCCATTA
GTTTTCAAAATGACTGAAAATAAACCATCTCTTTCCGAGATTGAAGAAAG
TGTTTACCAGCCTGCATCCGATATTGCTCCGCCGCACAGGCTAAGGACTG
GGACGGAGTTATCATACAGCCCGCGATTGCGCACTAGTACCGAACTCTCT
GTTGTCAGTGTCGGGCTTGGATCGAGCCAGAATATTTTCCGCAAAATCTC
AGCTGAAGTGTTAAGTTTGAATCCGAAAAATCCGACTGATGACGAAGATG
AATCCGATACCCGATTTGCCAATTATCTGGAGTTAGAAGATTCCGTCATC
TACAAAGCTCCTTCCAGTGTTCCGAAATTTGAAGCACCAAAATCCATCCC
GCAAAATATAGAACGAGATTCGTACGTCGAGATGGAAGAAGCGTGCTATG
AGGATGCAGATGTGGATAATATTTACGCCCCACTTGAGGCGTCTTCTGTG
GGCGGCAATGATGAAAATGCTGCGGGTGAGGTATATGAACAACTTGTGTT
TACGTAAAAACAGACTGTGATCTGGTGAGAGGGTTGGAATACCAAAACGG
TAAAAATGTTGCATGATTTATATTATGAAATCAACATGGATGAAAAGTTA
ACAATGAATGCGCCTAAAGATTCATACACTGCTCAACTATTTGGAACTAT
TACTGATATTCATCTGTACAAGTGACCAATTTTAGCTGAACTGGCGCTAC
AATCGAAGTGACTATTAAAGGTTTCAATAAACGAAGATGTTTATGCTAAA
GGAAACCCTGTACTGTAGTATAAACAAACTTTCAACGATTTGTCTCTATG
AAGATTTAGAAAATGGTGTATTTTAATGTTTGTAGAAATTTTTATGATGT
ATAAATTGTAGGTAGTATTTTATCCAATTTTTAGTTCAATTTTTAATCTA
AAGTATTCTTATTTTGTAAAACATCTTAAAAACTTTGTTCAATTCATTGC
TCTACCCGAATCATCAACACCAGA Coding sequence (CDS) from alignment at sc0000304:221526..224149- >TCONS_00018692 ID=TCONS_00018692|Name=TCONS_00018692|organism=Clytia hemisphaerica|type=CDS|length=4518bp|location=Sequence derived from alignment at sc0000304:221526..224149- (Clytia hemisphaerica) GTTATAACGGATCGCATTTGATGACCACCACTACCGAAAAACCGGAAGAG AAGGGAAGAAGGGAAGGTGAAAAAGGAAGAACAATGAAAGATCAATCAAT CATGAAACTCATCATCATTATCGCTCCAATCGCCATCATTTTATTGTTTG TCTGTGTCATTTCAATGGCTTGTATACGAAAACATCGTGGAAGCATTTTT GGTTCCTGCAAAAAGCGGCTGTCCGCTGATTCCCCCTGCCAAGAGGATAT TGAACCGGACGAGCTGTCCGGTATGTATGCCGGGCTAAATATGAAGCGTC CCTCAGCTTTACCGAACACATATGAAGCATTGCAAAAGATGAGTGTTCAA TACGAGAAAATTGACTCGCCATTAGTTTTCAAAATGACTGAAAATAAACC ATCTCTTTCCGAGATTGAAGAAAGTGTTTACCAGCCTGCATCCGATATTG CTCCGCCGCACAGGCTAAGGACTGGGACGGAGTTATCATACAGCCCGCGA TTGCGCACTAGTACCGAACTCTCTGTTGTCAGTGTCGGGCTTGGATCGAG CCAGAATATTTTCCGCAAAATCTCAGCTGAAGTGTTAAGTTTGAATCCGA AAAATCCGACTGATGACGAAGATGAATCCGATACCCGATTTGCCAATTAT CTGGAGTTAGAAGATTCCGTCATCTACAAAGCTCCTTCCAGTGTTCCGAA ATTTGAAGCACCAAAATCCATCCCGCAAAATATAGAACGAGATTCGTACG TCGAGATGGAAGAAGCGTGCTATGAGGATGCAGATGTGGATAATATTTAC GCCCCACTTGAGGCGTCTTCTGTGGGCGGCAATGATGAAAATGCTGCGGG TGAGGTATATGAACAACTTGTGTTTACGTAATTTCAATTGAAGCCTTATC TACCGGTTGTCTTGGCTCACGGACGCCCAACAGTTCCATTAAAATCAACG GAAAAGAATGCCGGAACTTATCTAAAACCGGAGTCAATCTTCTCATTATT TCACCGGACAGAACACTTAAACGATACAGCATAAATACACCGCTTATAAG CTTACGGCGCCGAATACGAGTTTTAAAATACTTCGAAAAGAATGCGCTTC AAAATGGTAGCGTAGTCGTGATTGTATCGCAAAACGCATGTTTTTTGAAT TACGCTAACTGGCCAAACATGATCAAGTATGCAGCCAAACTCAATGTCGG TCATTTTGAATGGAATTCTCACTTCCATACGGGTCTAATGATTGGTTGTC ATGGCTACTGTCCAGATTACGTCATTAGTGGGAAATTACCGTTCACGAAA TTGAGTCGAGATGATGACGAGTTCAAATACAACGTTGACTTCGTTTTACC AGAACAAACAAAAATATATTTGGAGTAAAAAATTGAAGAAATCTCATTCG AAGATGAAGAGGGTTTCAACATTACAGTATGGTTGCTATCTACTTCTGCT TATTCACTTCATACACGTGACAATGAGTTGCCACATCTCACCCAACGACA CTGTTGGTTATAACGGATCGCATTTGATGACCACCACTACCGAAAAACCG GAAGAGAAGGGAAGAAGGGAAGGTGAAAAAGGAAGAACAATGAAAGATCA ATCAATCATGAAACTCATCATCATTATCGCTCCAATCGCCATCATTTTAT TGTTTGTCTGTGTCATTTCAATGGCTTGTATACGAAAACATCGTGGAAGC ATTTTTGGTTCCTGCAAAAAGCGGCTGTCCGCTGATTCCCCCTGCCAAGA GGATATTGAACCGGACGAGCTGTCCGGTATGTATGCCGGGCTAAATATGA AGCGTCCCTCAGCTTTACCGAACACATATGAAGCATTGCAAAAGATGAGT GTTCAATACGAGAAAATTGACTCGCCATTAGTTTTCAAAATGACTGAAAA TAAACCATCTCTTTCCGAGATTGAAGAAAGTGTTTACCAGCCTGCATCCG ATATTGCTCCGCCGCACAGGCTAAGGACTGGGACGGAGTTATCATACAGC CCGCGATTGCGCACTAGTACCGAACTCTCTGTTGTCAGTGTCGGGCTTGG ATCGAGCCAGAATATTTTCCGCAAAATCTCAGCTGAAGTGTTAAGTTTGA ATCCGAAAAATCCGACTGATGACGAAGATGAATCCGATACCCGATTTGCC AATTATCTGGAGTTAGAAGATTCCGTCATCTACAAAGCTCCTTCCAGTGT TCCGAAATTTGAAGCACCAAAATCCATCCCGCAAAATATAGAACGAGATT CGTACGTCGAGATGGAAGAAGCGTGCTATGAGGATGCAGATGTGGATAAT ATTTACGCCCCACTTGAGGCGTCTTCTGTGGGCGGCAATGATGAAAATGC TGCGGGTGAGGTATATGAACAACTTGTGTTTACGTAATTTCAATTGAAGC CTTATCTACCGGTTGTCTTGGCTCACGGACGCCCAACAGTTCCATTAAAA TCAACGGAAAAGAATGCCGGAACTTATCTAAAACCGGAGTCAATCTTCTC ATTATTTCACCGGACAGAACACTTAAACGATACAGCATAAATACACCGCT TATAAGCTTACGGCGCCGAATACGAGTTTTAAAATACTTCGAAAAGAATG CGCTTCAAAATGGTAGCGTAGTCGTGATTGTATCGCAAAACGCATGTTTT TTGAATTACGCTAACTGGCCAAACATGATCAAGTATGCAGCCAAACTCAA TGTCGGTCATTTTGAATGGAATTCTCACTTCCATACGGGTCTAATGATTG GTTGTCATGGCTACTGTCCAGATTACGTCATTAGTGGGAAATTACCGTTC ACGAAATTGAGTCGAGATGATGACGAGTTCAAATACAACGTTGACTTCGT TTTACCAGAACAAACAAAAATATATTTGGAGTAAAAAATTGAAGAAATCT CATTCGAAGATGAAGAGGGTTTCAACATTACAGTATGGTTGCTATCTACT TCTGCTTATTCACTTCATACACGTGACAATGAGTTGCCACATCTCACCCA ACGACACTGTTGGTTATAACGGATCGCATTTGATGACCACCACTACCGAA AAACCGGAAGAGAAGGGAAGAAGGGAAGGTGAAAAAGGAAGAACAATGAA AGATCAATCAATCATGAAACTCATCATCATTATCGCTCCAATCGCCATCA TTTTATTGTTTGTCTGTGTCATTTCAATGGCTTGTATACGAAAACATCGT GGAAGCATTTTTGGTTCCTGCAAAAAGCGGCTGTCCGCTGATTCCCCCTG CCAAGAGGATATTGAACCGGACGAGCTGTCCGGTATGTATGCCGGGCTAA ATATGAAGCGTCCCTCAGCTTTACCGAACACATATGAAGCATTGCAAAAG ATGAGTGTTCAATACGAGAAAATTGACTCGCCATTAGTTTTCAAAATGAC TGAAAATAAACCATCTCTTTCCGAGATTGAAGAAAGTGTTTACCAGCCTG CATCCGATATTGCTCCGCCGCACAGGCTAAGGACTGGGACGGAGTTATCA TACAGCCCGCGATTGCGCACTAGTACCGAACTCTCTGTTGTCAGTGTCGG GCTTGGATCGAGCCAGAATATTTTCCGCAAAATCTCAGCTGAAGTGTTAA GTTTGAATCCGAAAAATCCGACTGATGACGAAGATGAATCCGATACCCGA TTTGCCAATTATCTGGAGTTAGAAGATTCCGTCATCTACAAAGCTCCTTC CAGTGTTCCGAAATTTGAAGCACCAAAATCCATCCCGCAAAATATAGAAC GAGATTCGTACGTCGAGATGGAAGAAGCGTGCTATGAGGATGCAGATGTG GATAATATTTACGCCCCACTTGAGGCGTCTTCTGTGGGCGGCAATGATGA AAATGCTGCGGGTGAGGTATATGAACAACTTGTGTTTACGTAATTTCAAT TGAAGCCTTATCTACCGGTTGTCTTGGCTCACGGACGCCCAACAGTTCCA TTAAAATCAACGGAAAAGAATGCCGGAACTTATCTAAAACCGGAGTCAAT CTTCTCATTATTTCACCGGACAGAACACTTAAACGATACAGCATAAATAC ACCGCTTATAAGCTTACGGCGCCGAATACGAGTTTTAAAATACTTCGAAA AGAATGCGCTTCAAAATGGTAGCGTAGTCGTGATTGTATCGCAAAACGCA TGTTTTTTGAATTACGCTAACTGGCCAAACATGATCAAGTATGCAGCCAA ACTCAATGTCGGTCATTTTGAATGGAATTCTCACTTCCATACGGGTCTAA TGATTGGTTGTCATGGCTACTGTCCAGATTACGTCATTAGTGGGAAATTA CCGTTCACGAAATTGAGTCGAGATGATGACGAGTTCAAATACAACGTTGA CTTCGTTTTACCAGAACAAACAAAAATATATTTGGAGTAAAAAATTGAAG AAATCTCATTCGAAGATGAAGAGGGTTTCAACATTACAGTATGGTTGCTA TCTACTTCTGCTTATTCACTTCATACACGTGACAATGAGTTGCCACATCT CACCCAACGACACTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00018692-exon-sc0000304-1575043694:223995..224149 | TCONS_00018692-exon-sc0000304-1575043694:223995..224149 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1575043694:223241..223711 | TCONS_00018692-exon-sc0000304-1575043694:223241..223711 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1575043694:221526..222873 | TCONS_00018692-exon-sc0000304-1575043694:221526..222873 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1510915933:223995..224149 | TCONS_00018692-exon-sc0000304-1510915933:223995..224149 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1510915933:223241..223711 | TCONS_00018692-exon-sc0000304-1510915933:223241..223711 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1510915933:221526..222873 | TCONS_00018692-exon-sc0000304-1510915933:221526..222873 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1491911889:223995..224149 | TCONS_00018692-exon-sc0000304-1491911889:223995..224149 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1491911889:223241..223711 | TCONS_00018692-exon-sc0000304-1491911889:223241..223711 | Clytia hemisphaerica | exon |
TCONS_00018692-exon-sc0000304-1491911889:221526..222873 | TCONS_00018692-exon-sc0000304-1491911889:221526..222873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000304 | supercontig | sc0000304:221526..224149 - |
Blast
The following BLAST results are available for this feature:
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