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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018694 ID=TCONS_00018694|Name=TCONS_00018694|organism=Clytia hemisphaerica|type=transcript|length=6425bpRun BLAST on NCBI protein sequence of TCONS_00018694-protein >TCONS_00018694-protein ID=TCONS_00018694-protein|Name=TCONS_00018694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1858bp AEDSKKAKSNEEEPVNQSAVICQTHNLIDVNAEIPDDLIGNITYKQFNRIRun BLAST on NCBI transcript from alignment at sc0000304:302109..321070- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018694 ID=TCONS_00018694|Name=TCONS_00018694|organism=Clytia hemisphaerica|type=transcript|length=18962bp|location=Sequence derived from alignment at sc0000304:302109..321070- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000304:302109..321070- >TCONS_00018694 ID=TCONS_00018694|Name=TCONS_00018694|organism=Clytia hemisphaerica|type=CDS|length=172887bp|location=Sequence derived from alignment at sc0000304:302109..321070- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018694 vs. Swiss-Prot (Human)
Match: CHD3 (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 1225.69 bits (3170), Expect = 0.000e+0 Identity = 643/1149 (55.96%), Postives = 817/1149 (71.11%), Query Frame = 2
Query: 770 EHNSVCDVCAEGGDILLCDTCTCSWHMTCLDPPLDEVPEGQWSCPKCVAE-------------MNGQIXXXXXXXXTFHGDYCKICKDGGELLCCDFCPGTYHMRCVKPQLISVPEGEWKCPMCKVDDLPEKVERILFWKFYTHKPTA---EEVANGAKDEP-------YKVRKFFVKYANMSYWKCHWIDELQIEKFHVSLYRFFCRKNDMNDPPMTEEGTVE--GGEDINVDEKEHLRNMDQRFYQYGIKPEWLQMHRIIWHRDLKKQGGTQYLVKWKEIGYDAATWEFKSDEDNKDIPDFQKMIDDYNNLR-TAHXXXXXXXXXXXXXXDGWELDIKPNE------YNFEEQPKFITDTGGRLHEYQIEGINWIRYSWGQRENTILADEMGLGKTIQTITYLNSLFKEGRCDGPFLICAPLSTLVNWEREFEFWAPDMYCVTYTGHRENRVVIRNYEMCFDEDNIRKGHKAYKMKSGTPVKFHALLTSYELVAIDAATLQSINWKVLVIDEAHRLKNNQSKFFRTMNGYSIGYTLLLTGTPXXXXXXXXXXXXXXXCPDKFIQRETFLAEFEDIGKEDQIKKLHEMLGPHMLRRLKADVLKGMPTKSEFIVRVELSPMQKKFYKFILTKNFGALNAKGSA-QVSLLNVVMELKKCCNHPYLFATAAAEAPRYQTNAFEVKALTEASGKLVLMCKMLQKLKAQGHRVLIFSQMTRVLDLLEDFFEGHMWRYERLDGTITGMVRQAAIDRFNQPNSDIFAFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTKGTVEERITQVAKRKMMLTHLVVRPGLGSKAAQTMSKRELDDILKFGTEEMFKDD------EENDGRIVYDDKAIELLLDRSKEGIQEKE-GGMDEYLSSFKVANYTVKDKDEPDVEVLKQEEV---IDNTYWEKLLRHHYEQEQEYIASTLGKGKRVRKQVNYSDGALAAETKIRQGYDDSDFD-ASELVDDSDGSEEETSNLTARQKKFRERDVLPPLLAKVGNQLEVYGFNPRQRRAFLTAVMRYGLPPRDFKTARDKWCIHNLRGKTEKAFQAYTSMFLRHLCEPMHDNKAEAYSDGVPREGVNRLQVLSRVGIMSLIRRKVEEYSSIN 4084
+H C+VC +GG+I+LCDTC ++H+ CLDP LD PEG+WSCP C E EE E EEE H +YC++CKDGGELLCCD C +YH+ C+ P L +P GEW CP C L +V++IL W+ + P A + A+G D P R+FFVK+ +SYW C W ELQ+E FH+ +YR + RKNDM++PP + G+ E G D + H M++++Y++GIKPEW+ +HRII H + K+G YLVKW+++ YD +TWE ED +IP++++ Y R + K KK+ + D P+ +E QP+FIT TGG LH YQ+EG+NW+R+SW Q +TILADEMGLGKTIQTI +L SL+KEG GPFL+ APLST++NWEREF+ WAP Y VTYTG +++R +IR E F+++ I+ G KA+KMK VKFH LLTSYEL+ ID A L SI W LV+DEAHRLKNNQSKFFR +NGY I + LLLTGTPLQNNLEELFHLLNFL P++F E FL EF DI KEDQIKKLH++LGPHMLRRLKADV K MP K+E IVRVELSPMQKK+YK+ILT+NF ALN++G QVSLLN++M+LKKCCNHPYLF AA E+P+ + A+E AL ++SGKL+L+ KML+KLK QGHRVLIFSQMT++LDLLEDF + ++YER+DG ITG +RQ AIDRFN P + F FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQ NKVMIYRFVT+ +VEERITQVAKRKMMLTHLVVRPGLGSKA +MSK+ELDDILKFGTEE+FKD+ EE+ I YD++AI LLDR+++ ++ + M+EYLSSFKVA Y V+++D+ + + + +D YWEKLLRHHYEQ+QE +A LGKGKRVRKQVNY+D A + + S++ SE D+ E + RQ + + LPPLLA+VG +EV GFN RQR+AFL AVMR+G+PP+D T +W + +LRGKTEK F+AY S+F+RHLCEP D +E ++DGVPREG++R QVL+R+G+MSL+++KV+E+ IN
Sbjct: 377 DHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWR-WGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINH-SVDKKGNYHYLVKWRDLPYDQSTWE----EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAG-SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQD------NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTT--QWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADG-SETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHIN 1509 HSP 2 Score: 286.189 bits (731), Expect = 2.640e-77 Identity = 134/207 (64.73%), Postives = 160/207 (77.29%), Query Frame = 2
Query: 4814 PLFMFNIADGGFTELHVLWEAEEKR-----KIDNIWWRYHDYWLLAGVVVHGYGRWQDILNDIRFDTINRPFSRMT-----LDYKNKFIARRFKLLEQALIVEEQMKRSTFKNIQQSTTHQVMSLQSRFAELECLAESHQHLSKESLAGNKPANAVLHKVLNQLESILSDMKNDVIRLPTTLAKMPPITNRLDMSERAVLTRLTTGG 5404
P FMFNIADGGFTELH LW+ EE+ K++ IW R HDYWLLAG+V+HGY RWQDI ND +F IN PF L+ KNKF+ARRFKLLEQAL++EEQ++R+ + N+ Q H M+L +RFAE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLE +LSDMK DV RLP TL+++PPI RL MSER++L+RL + G
Sbjct: 1705 PRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKG 1911 The following BLAST results are available for this feature:
BLAST of TCONS_00018694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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