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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018701 ID=TCONS_00018701|Name=TCONS_00018701|organism=Clytia hemisphaerica|type=transcript|length=3748bpRun BLAST on NCBI protein sequence of TCONS_00018701-protein >TCONS_00018701-protein ID=TCONS_00018701-protein|Name=TCONS_00018701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp MNDYVELENKEDGIYKLNAVLIHRGLSANSGHYIAHIWDEEQGVWSRFNDRun BLAST on NCBI transcript from alignment at sc0000304:329077..356502- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018701 ID=TCONS_00018701|Name=TCONS_00018701|organism=Clytia hemisphaerica|type=transcript|length=27426bp|location=Sequence derived from alignment at sc0000304:329077..356502- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000304:329077..356502- >TCONS_00018701 ID=TCONS_00018701|Name=TCONS_00018701|organism=Clytia hemisphaerica|type=CDS|length=48573bp|location=Sequence derived from alignment at sc0000304:329077..356502- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018701 vs. Swiss-Prot (Human)
Match: UBP48 (Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens GN=USP48 PE=1 SV=1) HSP 1 Score: 466.848 bits (1200), Expect = 5.538e-144 Identity = 255/582 (43.81%), Postives = 359/582 (61.68%), Query Frame = 2
Query: 437 NPNCFTNLGEKFWFNTIKESFWVKEEDPETERKIENGHVGLKNLGATCYVNTFLQLWFTNKPLRSAVYRWHNDIPPTEIVNESEEGASKTITLSFGDDSTKAICGNLQFLFSLLQYSDRRYVDPSPFLESLGIEPNEQQDAQEFNKLFISLLDSSLLAQG----INIIDQQFGGTYCYRTKCQHCHAVSDRPSTFYELDLNIKGHSTLHKCLKDFLKDEVLDGDNQYFCCHCQCKRDATRKIVLQKLPKTLNLQLLRFVFDRQTFTKKKLNNSVSFPDTLDMNDYVELENKEDGIYKLNAVLIHRGLSANSGHYIAHIWDEEQGVWSRFNDEEVEEMKSKTLELGKEDDLEGIXXXXXXXXXXXXXXPGHQSKNSYMLVYVKNGEESP-SSINPPENMLEIVAKDNSFFDEWVDTVKSKRNEKLSIGSERQKEVQGLFSRLPVRENDSDYDWISTKWLRRWLSTDDGPVPPIDNTELMCIHSCVDPSKLNLLKRVSGTTADDLFNKYGGLPRFKSEALCKKCEEFLKRKKEFFNKLTDDLKIFAKCSKTTYKVDSAKCYWVGKKTLKQMKQLATKEFMDSYG 2167
NPNC +GE W I E+ + +DP ER+ +N VGL NLGATCYVNTFLQ+WF N LR A+Y + + + +E D + IC +LQ+LF+LLQ S+RRY+DPS F+++LG++ +QQDAQEF+KLF+SLL+ +L Q NI+ QQF G Y Y T C C S S FYEL+LNI+GH L C+ +FLK+E L+GDN+YFC +CQ K++ATRKI L LP TLNLQL+RFVFDRQT KKKLN + F + LDM YVE + +Y+L+AVLIHRG+SA SGHYIAH+ D + G W +FNDE++E+M+ K L+LG E+DL E K + K + H S+N+YMLVY +E P +++ P + E+V +DNS F+EW + R + + G + +EV+ L+ RLP Y+++S +WL++WL + P PIDN +C H + P K++++KR+S AD +++YGG PR +ALCK+C R N+L +D K K V + +WVGK +L+ +QLA ++ + G
Sbjct: 51 NPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEK---------DYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQQQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKGG-SYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDL--AEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEMRKQSVDKGKAKHEEVKELYQRLPA--GAEPYEFVSLEWLQKWLD-ESTPTKPIDNHACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRILRLKNQLNEDYKTVNNLLKAA--VKGSDGFWVGKSSLRSWRQLALEQLDEQDG 615 HSP 2 Score: 125.946 bits (315), Expect = 4.565e-29 Identity = 113/408 (27.70%), Postives = 192/408 (47.06%), Query Frame = 2
Query: 2375 FNEDIVCLDHGNLNLQSSSRILISEEDWARCLEYFPSATSFASDTPMCIECINIQKSNEEFKEVEKMQALEQRDCLSFLFESQNDRTAKLQTMDNGAFHVIPMSFIQNWRRKIKYNKLLE--EEIDNSEMICEHDLSLYSAEEIVDEVYKDEPEITFIDEGEQNKLKTFFKYQQPVTVSMIKSSTTNGNGQTVYETFYESQPTYCKECRSLRLAEEAFDMKSYENQPIYVQKLTEKE--------QHNYTVDESKKNTDDEAIDELVEISVTGSKAFLKHQKREFSEAAEFVPNKKFKNDTSENAXXXXXXXXXXGEYIVHVNSTHXXXXXXXXXXXXFSVFPLEQVLTFPNGYVLTEDDKELGELGVEPHMHLYLSVAQPDKDSIDTVPPGKERTLESGFKGTNLVS 3568
FNEDI+C HG L + + R L+S+E W++ +YFP A F S C +C +++ EE + + KM A EQ+ L LF+ +N D +++ F++ WR+ ++ + NS ++C H +++ + E D I I E ++ F + ++ I+ N + ET Y S+P C ECR L ++ D++ Y IYV K+ + + + N + E++++ ++ D + S K QK + ++ + + RRS RHR+ RGE + V++ TLK+LK+Q++ FSV P +Q L+ +G +L++D LG LGV P + L +P D + E GFKGT L+
Sbjct: 646 FNEDILC-PHGELCISENERRLVSKEAWSKLQQYFPKAPEFPSYKECCSQCKILEREGEENEALHKMIANEQKTSLPNLFQDKNRPCLSNWPEDTDVLYIVSQFFVEEWRKFVRKPTRCSPVSSVGNSALLCPHGGLMFTFASMTKE---DSKLIALIWPSEWQMIQKLFVVDHVIKITRIEVGDVNPS-----ETQYISEPKLCPECREGLLCQQQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQSNGGTKRQK---------ISHQNYIAYQKQVIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSI-DGKILSDDCATLGTLGVIPESVILLKADEPIADYAAMDDVMQVCMPEEGFKGTGLLG 1034 The following BLAST results are available for this feature:
BLAST of TCONS_00018701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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