TCONS_00018703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018703
Unique NameTCONS_00018703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018703 ID=TCONS_00018703|Name=TCONS_00018703|organism=Clytia hemisphaerica|type=transcript|length=312bp
GAAGTTTACGGGATTCGATGTGATCGACCATTTGAAGCATTAGAATTCTT
TCGTATACTTTTGAAAGGATTGGGAGAATGGATATCGGTCGGTAATCTGA
CGGTTCACTTGGTTCATCGACTTTCGGAATAGGCGTGATCTTCGAGATTT
TCCATTGGTTTGGAAAAACGTTCTCCTCGATTGCAGTGTTTATTATGTGA
CAAATTGGACTGGTGATTTCGTTAATACAAAGTTTTAAGAATTTCGAAGG
TATCTTATCTTGTCCGGTGGAGCAATCATTACGGAGTGAGAGGATTGCTT
TTCTTACGCCCG
Run BLAST on NCBI

protein sequence of TCONS_00018703-protein

>TCONS_00018703-protein ID=TCONS_00018703-protein|Name=TCONS_00018703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
GVRKAILSLRNDCSTGQDKIPSKFLKLCINEITSPICHIINTAIEENVFP
NQWKISKITPIPKVDEPSEPSDYRPISILPILSKVYERILMLQMVDHIES
RKL
Run BLAST on NCBI

transcript from alignment at sc0000304:18888..19199

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018703 ID=TCONS_00018703|Name=TCONS_00018703|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at sc0000304:18888..19199 (Clytia hemisphaerica)
CGGGCGTAAGAAAAGCAATCCTCTCACTCCGTAATGATTGCTCCACCGGA
CAAGATAAGATACCTTCGAAATTCTTAAAACTTTGTATTAACGAAATCAC
CAGTCCAATTTGTCACATAATAAACACTGCAATCGAGGAGAACGTTTTTC
CAAACCAATGGAAAATCTCGAAGATCACGCCTATTCCGAAAGTCGATGAA
CCAAGTGAACCGTCAGATTACCGACCGATATCCATTCTCCCAATCCTTTC
AAAAGTATACGAAAGAATTCTAATGCTTCAAATGGTCGATCACATCGAAT
CCCGTAAACTTC

Coding sequence (CDS) from alignment at sc0000304:18888..19199

>TCONS_00018703 ID=TCONS_00018703|Name=TCONS_00018703|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0000304:18888..19199 (Clytia hemisphaerica)
GGCGTAAGAAAAGCAATCCTCTCACTCCGTAATGATTGCTCCACCGGACA
AGATAAGATACCTTCGAAATTCTTAAAACTTTGTATTAACGAAATCACCA
GTCCAATTTGTCACATAATAAACACTGCAATCGAGGAGAACGTTTTTCCA
AACCAATGGAAAATCTCGAAGATCACGCCTATTCCGAAAGTCGATGAACC
AAGTGAACCGTCAGATTACCGACCGATATCCATTCTCCCAATCCTTTCAA
AAGTATACGAAAGAATTCTAATGCTTCAAATGGTCGATCACATCGAATCC
CGTAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010457XLOC_010457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018703-proteinTCONS_00018703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018703-exon-sc0000304-1491911889:18888..19199TCONS_00018703-exon-sc0000304-1491911889:18888..19199Clytia hemisphaericaexon
TCONS_00018703-exon-sc0000304-1510915933:18888..19199TCONS_00018703-exon-sc0000304-1510915933:18888..19199Clytia hemisphaericaexon
TCONS_00018703-exon-sc0000304-1575043694:18888..19199TCONS_00018703-exon-sc0000304-1575043694:18888..19199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:18888..19199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3837	2.91601	4.18113	4.59114	1.19086	1.71864	1.18016	1.5663	0.04522	0	1.58434	1.96473	2.22521	1.1015	1.07605	1.39865	2.76772	4.67462	3.66028	1.42175	0.835263	0	1.32006	0.680239	2.21813	0	3.53715	4.03866	0.700576	0.453063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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