TCONS_00018716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018716
Unique NameTCONS_00018716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018716 ID=TCONS_00018716|Name=TCONS_00018716|organism=Clytia hemisphaerica|type=transcript|length=476bp
GGAATTGTTCCTAAAATACGTCTTAAAAGTTGATTGCAATACAAAATATC
CCACCCTAGTCTCAAACTTCTTAAAGCTTGTTGATTCGGCTTGAAAACTT
TGAATTCCGTTAAGTGCAATAGCCAAAAAAATTCTGATTGCCACAATAAG
GCTAAGATTTTCAATACTATTTTCTGTTGGGAGAACTGGTCAATTTGACT
GAAAGTTGTGACAGTGTAACAGGGGTGTACTTTTTGTGCTGTGCTTTTGT
GACCTAATATATAGATGGTGCTGTAATATTACCGTATACTTCAAATAAAT
GCCCCACTCTAGAGTTTATTTGAGGGAGCGTTTAAAAGAGGGGGcacgaa
gtaatacggtatagaTATTAATACTGTTTATGCTTCAAATACTTACTTTT
CAGTGAGGTGTACTTAGTATTGAAGTGTGTGCATGAAGTGATTGCATTGC
ATTGTATTGGTAATATTTAAGTGCCG
Run BLAST on NCBI

transcript from alignment at sc0000304:264154..264629

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018716 ID=TCONS_00018716|Name=TCONS_00018716|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0000304:264154..264629 (Clytia hemisphaerica)
CGGCACTTAAATATTACCAATACAATGCAATGCAATCACTTCATGCACAC
ACTTCAATACTAAGTACACCTCACTGAAAAGTAAGTATTTGAAGCATAAA
CAGTATTAATAtctataccgtattacttcgtgCCCCCTCTTTTAAACGCT
CCCTCAAATAAACTCTAGAGTGGGGCATTTATTTGAAGTATACGGTAATA
TTACAGCACCATCTATATATTAGGTCACAAAAGCACAGCACAAAAAGTAC
ACCCCTGTTACACTGTCACAACTTTCAGTCAAATTGACCAGTTCTCCCAA
CAGAAAATAGTATTGAAAATCTTAGCCTTATTGTGGCAATCAGAATTTTT
TTGGCTATTGCACTTAACGGAATTCAAAGTTTTCAAGCCGAATCAACAAG
CTTTAAGAAGTTTGAGACTAGGGTGGGATATTTTGTATTGCAATCAACTT
TTAAGACGTATTTTAGGAACAATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010470XLOC_010470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018716-exon-sc0000304-1491911889:264154..264629TCONS_00018716-exon-sc0000304-1491911889:264154..264629Clytia hemisphaericaexon
TCONS_00018716-exon-sc0000304-1510915933:264154..264629TCONS_00018716-exon-sc0000304-1510915933:264154..264629Clytia hemisphaericaexon
TCONS_00018716-exon-sc0000304-1575043694:264154..264629TCONS_00018716-exon-sc0000304-1575043694:264154..264629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:264154..264629 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.259149	0	0.294381	0	0	0	0	0	0	0	0	0	0	0	0.0809706	1.49624	2.55599	0.14125	0.147807	0.899301	2.2559	0.304705	0.13851	1.28396	2.54646	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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