TCONS_00018725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018725
Unique NameTCONS_00018725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018725 ID=TCONS_00018725|Name=TCONS_00018725|organism=Clytia hemisphaerica|type=transcript|length=496bp
tgaaaagaaagttgatttaaaattatcatCACTCAGTCGATTTGGTATAC
GTGGTCGTGGCGGTGCTAGAGGTAGTTCTGGGGCAGCATCAAGACTACCA
TCATTAAAACCGACACGAGATCTCACATTAGGAGGTACCCCTAAGAGAAC
GTTTACACCAAATATTGTTGGTCGTAGTACAAAAAAGGAAGATGGTGATA
ATCAAGCTGGACCAAGCTATGATCGACCAAGGAGAGGCTCAGGTCGTGGT
CGTGGCCGTGGAAGGGGTAGAGGACGTGGTCAAGGAGGGGGCAGGGGTCG
TGGAGATATCATTCAATCAAGTGGTGTATTTTCACAAGATTTAGTGTCAG
TGAATACAGATAAGAGCCCAGGTGACATGGTTTGTTTAGGTCATATTGAT
AATCGAATTATAGCGGTGCCGGACTATCATTCATTATTGGGAAGTATGCA
GTAGCGTTGCTTGTTGTTATATATATaggttttgtcaaattttcat
Run BLAST on NCBI

protein sequence of TCONS_00018725-protein

>TCONS_00018725-protein ID=TCONS_00018725-protein|Name=TCONS_00018725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
EKKVDLKLSSLSRFGIRGRGGARGSSGAASRLPSLKPTRDLTLGGTPKRT
FTPNIVGRSTKKEDGDNQAGPSYDRPRRGSGRGRGRGRGRGRGQGGGRGR
GDIIQSSGVFSQDLVSVNTDKSPGDMVCLGHIDNRIIAVPDYHSLLGSMQ
Run BLAST on NCBI

transcript from alignment at sc0000305:289595..290846+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018725 ID=TCONS_00018725|Name=TCONS_00018725|organism=Clytia hemisphaerica|type=transcript|length=1252bp|location=Sequence derived from alignment at sc0000305:289595..290846+ (Clytia hemisphaerica)
tgaaaagaaagttgatttaaaattatcatCACTCAGTCGATTTGGTATAC
GTGGTCGTGGCGGTGCTAGAGGTAGTTCTGGGGCAGCATCAAGACTACCA
TCATTAAAACCGACACGAGATCTCACATTAGGAGGTACCCCTAAGAGAAC
GTTTACACCAAATATTGTTGGTCGTAGTACAAAAAAGGAAGATGGTGATA
ATCAAGCTGGACCAAGCTATGATCGACCAAGGAGAGGCTCAGGTCGTGGT
CGTGGCCGTGGAAGGGGTAGAGGACGTGGTCAAGGAGGGGGCAGGGGTCG
TGGAGATATCATTCAATCAAGTGGTGTATTTTCACAAGGTATATTTGGAC
GAGAAACCTTAGCTGGTGCCTTATCAGGAAGTTATGGTcgaggtggtggt
ggtggtgttgCCAAGAATGAGGTAGACGATGGTGAAGAGGCTGTGTCCAA
AacatcttatataaaaaacatgaGGGGTGACGAAGAAGCAGAttctaata
aaatttttgaaatgttgaACGATGAAGGGAAAATTGAGGTCGATGATGAA
GATTTGAAAGCTGGTGGTTTGATGCCAATCACATTACCACTGGCGTCAAA
ATTAGCTAATAAAATTAAAACAGAggaaaatgatataaaaactGAAGTAC
CGAGTCAGAGTGACGATTCTGATGATAATATAGATGAAGATAATATAAAA
AAGCCAGATAATCCACCTTCACCTATCAAAAAACCCATCAATAAAGCAGC
CGCTGCTGAACAACCCACTCTAGAGATAAATGATATATTTAAGAAAGATG
GTATGGAGGAAGGAGCCTTGTTTTTCTTACAATTACCAGATGCTCTTCCC
ATAAACTACTTAGCTCAAGATGTCGATGAAGAGGTCAAGCCTGAAAAAGA
CGGCGCATCTGCTTCAAAACAAATCTCTTATGAAGAAGAAGATATtgaag
aaaaactgaaaaagttttcatttaataatgtcTCAGAAGGTTATATCGGT
AAATTACAAATACACAAATCAGGTAAAGTTCGAATGCGGCTTGGCAATGT
CTCCTTAGACTTATCACTCGGTACACCTTGTGGATTTTTACAAGATTTAG
TGTCAGTGAATACAGATAAGAGCCCAGGTGACATGGTTTGTTTAGGTCAT
ATTGATAATCGAATTATAGCGGTGCCGGACTATCATTCATTATTGGGAAG
TATGCAGTAGCGTTGCTTGTTGTTATATATATaggttttgtcaaattttc
at

Coding sequence (CDS) from alignment at sc0000305:289595..290846+

>TCONS_00018725 ID=TCONS_00018725|Name=TCONS_00018725|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000305:289595..290846+ (Clytia hemisphaerica)
gaaaagaaagttgatttaaaattatcatCACTCAGTCGATTTGGTATACG
TGGTCGTGGCGGTGCTAGAGGTAGTTCTGGGGCAGCATCAAGACTACCAT
CATTAAAACCGACACGAGATCTCACATTAGGAGGTACCCCTAAGAGAACG
TTTACACCAAATATTGTTGGTCGTAGTACAAAAAAGGAAGATGGTGATAA
TCAAGCTGGACCAAGCTATGATCGACCAAGGAGAGGCTCAGGTCGTGGTC
GTGGCCGTGGAAGGGGTAGAGGACGTGGTCAAGGAGGGGGCAGGGGTCGT
GGAGATATCATTCAATCAAGTGGTGTATTTTCACAAGATTTAGTGTCAGT
GAATACAGATAAGAGCCCAGGTGACATGGTTTGTTTAGGTCATATTGATA
ATCGAATTATAGCGGTGCCGGACTATCATTCATTATTGGGAAGTATGCAG
TAGgaaaagaaagttgatttaaaattatcatCACTCAGTCGATTTGGTAT
ACGTGGTCGTGGCGGTGCTAGAGGTAGTTCTGGGGCAGCATCAAGACTAC
CATCATTAAAACCGACACGAGATCTCACATTAGGAGGTACCCCTAAGAGA
ACGTTTACACCAAATATTGTTGGTCGTAGTACAAAAAAGGAAGATGGTGA
TAATCAAGCTGGACCAAGCTATGATCGACCAAGGAGAGGCTCAGGTCGTG
GTCGTGGCCGTGGAAGGGGTAGAGGACGTGGTCAAGGAGGGGGCAGGGGT
CGTGGAGATATCATTCAATCAAGTGGTGTATTTTCACAAGATTTAGTGTC
AGTGAATACAGATAAGAGCCCAGGTGACATGGTTTGTTTAGGTCATATTG
ATAATCGAATTATAGCGGTGCCGGACTATCATTCATTATTGGGAAGTATG
CAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010478XLOC_010478Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018725-proteinTCONS_00018725-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018725-exon-sc0000305-1491911889:289595..289932TCONS_00018725-exon-sc0000305-1491911889:289595..289932Clytia hemisphaericaexon
TCONS_00018725-exon-sc0000305-1510915933:289595..289932TCONS_00018725-exon-sc0000305-1510915933:289595..289932Clytia hemisphaericaexon
TCONS_00018725-exon-sc0000305-1575043694:289595..289932TCONS_00018725-exon-sc0000305-1575043694:289595..289932Clytia hemisphaericaexon
TCONS_00018725-exon-sc0000305-1491911889:290689..290846TCONS_00018725-exon-sc0000305-1491911889:290689..290846Clytia hemisphaericaexon
TCONS_00018725-exon-sc0000305-1510915933:290689..290846TCONS_00018725-exon-sc0000305-1510915933:290689..290846Clytia hemisphaericaexon
TCONS_00018725-exon-sc0000305-1575043694:290689..290846TCONS_00018725-exon-sc0000305-1575043694:290689..290846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:289595..290846 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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