TCONS_00018732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018732
Unique NameTCONS_00018732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018732 ID=TCONS_00018732|Name=TCONS_00018732|organism=Clytia hemisphaerica|type=transcript|length=220bp
TGCGAATCGAATGGCAACCTACTTCCAACTCTCTGCTCATCTTCTCTCGG
CAATCACGTGTCAGATATTTTTCATGGATGAACCCACTTACTTGAAATGC
ATTGCAAGACCAATAGCATCTGGCTTATCCTTGACTTCAACAATATCAGT
CAGTCTTGCCAAGACCCAAAAATTGCACGTCATTTTTGGTTTAAAAACAC
GAATCAGTGGGGtacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000305:27847..28823-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018732 ID=TCONS_00018732|Name=TCONS_00018732|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at sc0000305:27847..28823- (Clytia hemisphaerica)
TGCGAATCGAATGGCAACCTACTTCCAACTCTCTGCTCATCTTCTCTCGG
CAATCACGTGTCAGATATTTTTCATGGATGAACCCACTTACTTGAAATGC
ATTGCAAGACCAATAGCATCTGGGTAAGACAACACCCCTGTGTCACAGAC
CTACTGGGACTCAAGCCACACTGGAAAATTTGGCAAAAATTTGGTCCTCG
GTGGGATAATACCAGGGTCGGATACAGGAGGTAGGCTATCTTATTCATGG
AGAGTAATTAGTTTCCATATAAGGTAATACGATAATAAAGTGCACTCTCC
TCCATTGGTTATAGCCTCCCTCTGTATCCGAGCCTGAATACCCTGGAATT
TCAGCCCCACTGGGAAATGGACTTTCATTTCATCCCCACTCGAAAATAAT
TGTCTGAAAATTGCACTCCAAAACCATCCCCACTGGATTTTTTAACCTTG
GAACAATAGAATTGAGATCTCAATAAGGATTTTTATCCCCACTGAAGAAA
AAGATTTCACCGAGCCTGTGAGACAGGGGTGTTAAGACCTGAAAGTGAAT
TTCTCAAATACCTTTAACATTCTTCAAAGTCGTGTGTACACATTCTAATT
GTACCAATATACCAGATTTAAGGCTATACTTCCTGACCCCTTGATTGGTT
GATTTAAAAGGGCATTAACCGAGTGCTGTTAGAAAGTATATAAAAATACC
TTTCTAATGTTACCAAAACCATATAACTCTCAAACTACAAGCTTTTATAC
CATTTTGAAATTTAGGATTTCATGTATCAAAATGTGCAAGGGGCCAATAT
TTTCGGAACAGACTTTAGTTTAGTTATTAGAGACAATTGAGTTGATTCAA
ATTCCTCATCTAATGAAAATCTATTTCCAGCTTATCCTTGACTTCAACAA
TATCAGTCAGTCTTGCCAAGACCCAAAAATTGCACGTCATTTTTGGTTTA
AAAACACGAATCAGTGGGGTACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010483XLOC_010483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018732-exon-sc0000305-1575043694:28701..28823TCONS_00018732-exon-sc0000305-1575043694:28701..28823Clytia hemisphaericaexon
TCONS_00018732-exon-sc0000305-1575043694:27847..27943TCONS_00018732-exon-sc0000305-1575043694:27847..27943Clytia hemisphaericaexon
TCONS_00018732-exon-sc0000305-1510915933:28701..28823TCONS_00018732-exon-sc0000305-1510915933:28701..28823Clytia hemisphaericaexon
TCONS_00018732-exon-sc0000305-1510915933:27847..27943TCONS_00018732-exon-sc0000305-1510915933:27847..27943Clytia hemisphaericaexon
TCONS_00018732-exon-sc0000305-1491911889:28701..28823TCONS_00018732-exon-sc0000305-1491911889:28701..28823Clytia hemisphaericaexon
TCONS_00018732-exon-sc0000305-1491911889:27847..27943TCONS_00018732-exon-sc0000305-1491911889:27847..27943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:27847..28823 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.928708	0.951896	1.3151	6.88076	0	0	0	0	0	2.37086	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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