TCONS_00018743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018743
Unique NameTCONS_00018743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018743 ID=TCONS_00018743|Name=TCONS_00018743|organism=Clytia hemisphaerica|type=transcript|length=674bp
aGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGTTGTTGTAGAT
GTTGTTTATGGTGCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCT
TACATCATGATTGCCATCTATGGAAAGAGTTATTGTAGCTCTGCTAAAGA
AGCTTTCTCCTTGCTATTGAGAAACCCGGCAAGAGCGATTGCAATCAACG
GCATCACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTGACCGGTGCA
ATTGGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCTTTGCAACC
TGATAAATTGAAATACACCATAGTTCCTATCCTTatttgCACACTTGGAG
CATATATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGAT
ACAATGTTCCTTAGCTTCCTTGAAGATATGGAACGACACGACGGTTCACC
AGAAAAACCTTACTTCATGACCAAATCCTTGAAAAACATCATGGACAAAC
GTAACCGACCTCCTCCAAAGAGGGAAGAAGAAGAAGTTGCTATGTAATCG
CAGAATATCGTCAAATTTGTTGACCGAGATTTTCGTCTCTGGTACTTGAA
CGACGTCTCCAAATTATTGGGATAATGTCCCTGGTGTTTTGTAGAAATGT
TTGACTGTGAACTTAGATGGACTC
Run BLAST on NCBI

transcript from alignment at sc0000305:312482..317188-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018743 ID=TCONS_00018743|Name=TCONS_00018743|organism=Clytia hemisphaerica|type=transcript|length=4707bp|location=Sequence derived from alignment at sc0000305:312482..317188- (Clytia hemisphaerica)
AGAAGCGCATGATAATCCAGTAGCAAGATTTTTCATTTGGTAAGACGATT
TTTAATTTATTTACATTCAGTCATTCTTTATTCATTACTTGTGGGGGAGT
GAAGGTTACAGGTATCCTTAAGCTTAAGGGTGCATTTTTGGAGCCAAGAA
GAACCTGTAAGGGCTAGAAAAAATCAGAAAATTATTAAATCTCAGTCCCA
TTAAGGGTCGAAAGAAAGGAAAATTTCAAGCTTTTGCCCCTTGATTAAAA
GATTGAAATTTGGTCAAATTAGCCCACTAAGGGTCGTGAAATTCACAAAA
TGCTCCTTTTTTTCCCGAGGATCAAAGTCAGGGGGCACACACCTGTCAGC
TTACAACCCTTGTACCCCCCCCCCCCCCCCCACCCGTGCTCTTTGTATAC
CCAGTCATTCTTTATAAGTTTGTTGAATGGTAATATTGTATTGAGTTTCA
ACCATGACTTTCTACTTTCACTTACAGTTGTTGTAGATGTTGTTTATGGT
GCCTTGAAAATTGTTTGAGGTTTTTGAACAAGAATGCTTACATCATGGTA
CGTATAACACCCAGGCTGTATGAAAGCGTGAAGACTGGAAATTTCAAATT
GTAAATCACTCCACAAATTTACTTAAATATGATTAAAAAGATAAATTTCG
CGGTGATTTAAAGTACCCTAAAGGAATTTTTTTAACATCTACAAATTTCA
AACCTCTCATTTCTTCTTTCAGTTGAAACTACAGTAGACTCTCGCTAATT
CGAACTTCTATTATTCGAACCTATTCCTTATCCCCGTCAAGGAGAAACCC
TCTTAATATACTTTCTTTAATGCTAATCACCCTGTAAACAAATAAAATTC
CCCGTTCGAGTTCGAATTAGGCGGAGTTATATGATTATAACGTGTTACTT
AAAGAATAAGAACTCTTCATTATTTTCTTATCCTTTCGTTCTAGATTGCC
ATCTATGGAAAGAGTTATTGTAGCTCTGCTAAAGAAGCTTTCTCCTTGCT
ATTGAGAAACCCGGCAAGGTACATATGAATTTTATCTCGTTTTTCTGTTT
TGTCTGTCTCAAGATTAATAATCTGCAGCGGAGAGGGAAGGGTAAAACTT
TTGGTAGAACCGGAACCTGATAGCGATTAGTGCTCGTTGAAAAGATAACC
AGGTGTGGAATAACACTAAATAAAAAAATTTGAAGAAGATTAACAGCGTT
TTAAAAATCTATTCTTTATTCCTCCTAGAGCGATTGCAATCAACGGCATC
ACTGAGTTCATTTTGTTCATCGGAAAACTGCTGGTGACCGGTGCAATTGG
TGAGTGCGTTTCTACAATATCATTGTACAACGTTCATTTGAGAATTAGAA
CAGTAGTATGTCCTAACAAACATAGTAGTTCAATTGTTCATCTTGTCCAA
ACTTTTTAAAGGCGCCTCGAAAAAAATCATCATCCTTATTTTACTAACTC
ACTTTTCCTTTTTTTAATAGTTTTTAAATAATCGTGTAGAGACTAGTATA
CTTGATGGTCCTGAAAGCTTCATTGCTGTAATACCGGGTGCGCCACAAAA
AAGTTTCTCTCTTTAAAACTAATTTTCTCGAAATCTAAAAAGTTTAAAAG
AACCATTCCTACTCCATTGGAAAGAAGAAAGCGATAGACTTAAATTTTGA
TGGGTCATTTAATGAATTCGGTACATTAAATCGAAAGTTATGCTCAATTG
AATAAAAAAGTTACTTTCTGAAAGTGCTTAAAAACGTTAAAAATTGACCT
ATCAAATTAAACAGAAGCATAATTACATGATGCACCAGTTTTTTCGCTTC
AGTCATCAAAAATGATAATTAGCTGTCTAAATGTCCTTTTGTTATATAAA
GGAAGGTTGAATTACATTAAAAGGAAGAAAATTCGTTGAAAAAAGCCAAA
AAATCTGGTAAAATTCATAAAAATACATCAAATATGGGTTTCGACGTACA
TCCAGCCTTACATAGACTTTATCCAGTCTAAAACCAACAATCTGNAAAGT
AACTTTTTTTATTCAATTGAGCATAACTTTTGATCTAAAAAACCGAATTT
GATAAATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGTAA
TAGGCATGGTTCTTTTAAAAATTTTAGATTTCAAGCAAATCAGTTTCAAA
GAGAGAAACTTTTTTGTGGCGCACCCGGTATTTACACCAATATTTACCTT
GGTAGAGGTAAATTGTCAATCGCACAGCCTCTTTAACATAAATTTATTCT
GTCAATTTGTAGGTGTTGCGAGTTTCTTTTGGTTTGTGCAGTTTAATGCT
TTGCAACCTGATAAATTGAAATACACCATAGTTCCTATCCTTGTAAGTAT
AAATTTATATCTACCCATCCATATAATTTTTTAATTATATTTTTGGTGGA
ACATTGATCCTTTGAAAGGCGAAAGTGGGCGTGGTTGTGAATATAAATAA
GAAAAATAAACTCTCAACTAATTAGGTTCCAAACAACCAAAGCACTGTGA
AAAGAGAAAGATGAGAAGGACCCGATAAGATCCAAGTGATTTAGCTTAGA
AACAGGCTTATGTAGTTTATAAAGTCGATTTCCCATCTATCACTAGAACC
TGCTTAAAAATATATAGTCTTTTTCTCTTGGGTTTCTGTTTGTATGATCT
GTGAAACTGAATGAAAGCTATTACTTTTTTTAGATTTGCACACTTGGAGC
ATATATCGTGGCGACGTTATTCTTTAGTGTTTATGATATGGGGATCGATA
CAATGTTCCTTAGCTTCCGTAAGTATCTTCTCTTAAATAGGCTTTATCTC
ACCCAGGGCATAATATTAACGAAGAATGTTTTATACGGAATCACTCAAAA
TAGCCCGGGTGTTTGCCATTAGTTTTATTGATTAATTTCAAGATTAGTGG
CAAACACCCGGGCTTTTTTGGGTGCTTCCGTATAAACGACACGTCATGAA
TATCACGAACCGGGCTATTCCAGTAGATATTTCACCTCTCATGCTATAAG
GAAGTTTTTTTTGGAAGCTGGAAGATTTATTTCTACCAAAACTTGAATAC
GGTCATTTTTGCTGAATTAAAGTTTTCCGTTAATTTTTCATCTACACAGT
GGAAGACATGGAGAGAAACAATGGAAGCGAAGAGAAACCTTACTTCATGA
CTAAATCTCTGAGAAATATAATGAACCTTCGTAATGAAGTCGAACTAAAA
AAGAAAAAAGATTATTCCCAAGTGGAATAATTATGATAGATCATCAATTC
CATTAATATTAAGCACGCATTCAATCTTAATTTAATAACATGTCAGCTTT
TGCAAATCTTCTAATTTTACAGTCTTAATCTTTCTTAATCTTAAAGTATG
TGTGTAATAAAATAGCCAGAAAATTAATTATTATTCAAAAAACATTTCAA
CAAATATTTTTCAGCATAAGCTTTTCGTTTTATTAAAAAACATCATCAGT
GCATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTGACGGTTCAGATTTTCCGTTTGATGAATC
ATGCTCGGCCCATCTAATTTCAACATTTCGAACAGTTTCCCCCACATATG
TCTCACCACAGCTGCATTCGCCGAAATAAATTTTACAAGATGGGTGAGGA
TTTTGACTTTTGACTTTAAACAAACTTTTAACTTTCCTTGTTTGCCATTT
TATCATGAGGCGAAATTTTTCATTTGTGAAGCTGTGAAACTTTTCCATAA
ACTTTTTCAAAAGTTCTTCATTTTTCTGGCAGAACGGAATGTTTACGGAA
ACAAACTTTTTGGGTAATTCGAACAGGTTTTCGGGTATGATCATATCATT
CTGCTCTTTTTCATGAAAAATCTTAACAACACTTGCTACAAATCTTGAAG
GGAAACCAGCTCTTTCAAACTTATCAACTACAATTTCCTTTTCCATTGAA
AAATCTGATGCAATATTCTTTGCTCGATGTAGGTCAAGGTTACTTGTATA
TGCACTGATGATGTTTTTTAATAAAACGAAAAGCTTATGCTGAAAAATAT
TTGTTGAAATGTTTTTTGAATAATACTTAAAGTATGTCTTCTTAAGGATT
CTTGAAATATGTTTTAACGTAATATTTGATTCAATGATTTTATAAACCGA
TTTTAAAAGGAAAGTATTTGGATGTTAAATTCCATTTCTGAAGATTTTGG
AAAAATAAAAGATCAAATTAATCGAGGATAGACTAATTCTAATAAGTAAA
AAGACCCCTTTCTAAGTCTTTAAAATAACCTCTCATTGATGTTAAATACA
GTTTTAATTTTAACCACTAACTAATAATTCTGCAACATTTTGTCACTAAC
AGTTGAAGATATGGAACGACACGACGGTTCACCAGAAAAACCTTACTTCA
TGACCAAATCCTTGAAAAACATCATGGACAAACGTAACCGACCTCCTCCA
AAGAGGGAAGAAGAAGAAGTTGCTATGTAATCGCAGAATATCGTCAAATT
TGTTGACCGAGATTTTCGTCTCTGGTACTTGAACGACGTCTCCAAATTAT
TGGGATAATGTCCCTGGTGTTTTGTAGAAATGTTTGACTGTGAACTTAGA
TGGACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010491XLOC_010491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018743-exon-sc0000305-1575043694:317150..317188TCONS_00018743-exon-sc0000305-1575043694:317150..317188Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1575043694:316642..316711TCONS_00018743-exon-sc0000305-1575043694:316642..316711Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1575043694:316171..316244TCONS_00018743-exon-sc0000305-1575043694:316171..316244Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1575043694:315890..315960TCONS_00018743-exon-sc0000305-1575043694:315890..315960Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1575043694:314847..314926TCONS_00018743-exon-sc0000305-1575043694:314847..314926Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1575043694:314421..314505TCONS_00018743-exon-sc0000305-1575043694:314421..314505Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1575043694:312482..312736TCONS_00018743-exon-sc0000305-1575043694:312482..312736Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:317150..317188TCONS_00018743-exon-sc0000305-1510915933:317150..317188Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:316642..316711TCONS_00018743-exon-sc0000305-1510915933:316642..316711Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:316171..316244TCONS_00018743-exon-sc0000305-1510915933:316171..316244Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:315890..315960TCONS_00018743-exon-sc0000305-1510915933:315890..315960Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:314847..314926TCONS_00018743-exon-sc0000305-1510915933:314847..314926Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:314421..314505TCONS_00018743-exon-sc0000305-1510915933:314421..314505Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1510915933:312482..312736TCONS_00018743-exon-sc0000305-1510915933:312482..312736Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:317150..317188TCONS_00018743-exon-sc0000305-1491911889:317150..317188Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:316642..316711TCONS_00018743-exon-sc0000305-1491911889:316642..316711Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:316171..316244TCONS_00018743-exon-sc0000305-1491911889:316171..316244Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:315890..315960TCONS_00018743-exon-sc0000305-1491911889:315890..315960Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:314847..314926TCONS_00018743-exon-sc0000305-1491911889:314847..314926Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:314421..314505TCONS_00018743-exon-sc0000305-1491911889:314421..314505Clytia hemisphaericaexon
TCONS_00018743-exon-sc0000305-1491911889:312482..312736TCONS_00018743-exon-sc0000305-1491911889:312482..312736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:312482..317188 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
79.7967	80.4184	77.8107	75.8638	127.461	100.906	56.9379	64.0165	64.686	65.3134	52.3374	56.533	53.3639	46.6318	44.3674	52.6515	32.4118	38.4711	51.4699	62.6453	31.0649	27.1375	39.7236	35.5877	29.6666	28.2691	17.4828	14.2378	24.9634	23.393
Blast
[Close]
BLAST of TCONS_00018743 vs. Swiss-Prot (Human)
Match: CTL5 (Choline transporter-like protein 5 OS=Homo sapiens GN=SLC44A5 PE=2 SV=4)

HSP 1 Score: 147.902 bits (372), Expect = 1.793e-40
Identity = 72/141 (51.06%), Postives = 102/141 (72.34%), Query Frame = 2 
Query:   80 RFLNKNAYIMIAIYGKSYCSSAKEAFSLLLRNPARAIAINGITEFILFIGKLLVTGAIGVASFFWFVQ---FNALQPDKLKYTIVPILICTLGAYIVATLFFSVYDMGIDTMFLSFLEDMERHDGSPEKPYFMTKSLKNIM 493
            +FLN+NAYIMIAIYG+++C SAK+AF+LL+RN  +    + +T F+LF+GKLLV G+IGV +F +F Q     A  P  L Y  VP+L    G+Y++A  FFSVY M ++T+F+ FLED+ER+DGS  +PYF+T +L  I+
Sbjct:  567 KFLNRNAYIMIAIYGRNFCRSAKDAFNLLMRNVLKVAVTDEVTYFVLFLGKLLVAGSIGVLAFLFFTQRLPVIAQGPASLNYYWVPLLTVIFGSYLIAHGFFSVYAMCVETIFICFLEDLERNDGSTARPYFVTPNLHGIL 707
The following BLAST results are available for this feature:
BLAST of TCONS_00018743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTL51.793e-4051.06Choline transporter-like protein 5 OS=Homo sapiens... [more]
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