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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018750 ID=TCONS_00018750|Name=TCONS_00018750|organism=Clytia hemisphaerica|type=transcript|length=2746bp
AATCAACGTTGATTTAACGTTAGCCTAACGTTCGAAGCGTCCACATAact
ttagatgaacgttgaaacagcgttgtgtgccagctgggtggcTCTTATGG
ATTTCAAAACAACAGGGGCCTAAAGTTCATGATCTAGCACGACAATAACT
ACAATATATTAATCAAATTCTATTTCCCGAGAAAAAATTCCTTTATTAAA
AATTTGTACAGTATCTCACCGCAAAATAAAACCACACTTGTACACATAAC
TAGAATATTACTTAAATCTATTTACAATCCATTCATAAGAAGTTacaata
tttttgtatttccGGTATGATTGAAATCCGGTTATCAAATTTCCATATTG
TTCCGTATATCATTTCCGCAAATTTCAAACATGTTTTAGATACTTCAACG
TCATAAAATGCATATACAGAGAGGAGCCTTCGGAAatttatacacctttt
cgaccgtagcttcCAATTACCGCGCGGGCACTTTTTTGTCCGCTTCATCC
CACTAAAAGCGTCCATCGATGAACCgttccagtccttttttcgcacctat
agacaatagagaaatgtgtcaaaaaaggattggatcgaccgcacgactac
ggtcgaaaaggtgtattgatagAAGTTTTATACTAACTTTGAAATTTCAG
ATTtctagaaaaaatgaagaacgaGCATAAATTCGATATTATTTTGTCGT
AGTATCGTTTTTGGGTGCTGGCTAAGCAGGGCTTACCCCAGCCCGGCAGA
ACAACCGTTAAAGTGGAGGCACTAAATGCTCGAAATGAGATTGAATTCAC
CAGGAATCGCCGGagaaaaaaagtctattttgcCTAAAGGTTTCCGCTAG
GCCTGTATCAATTTTTATACTATTCAAGAATATTTCTTTGTACCCGACGA
CTggaaaaataatctaaaataaGGTATAAGCTCTACTTGAGatctttttt
atcattttgtagAACAGAAGAAAGTTTATTACTTAATTGTCAAGAGCTTC
ACCATATAAAATTTCCTCTTTTAACAAAGTCGAAAATCATCATTTCCGTG
TATTTTACTGTATTTTTTGCGTCATTGCGGTTTTACGTATCAACTTATTT
CCTCTTTTTGTCTTGAACAAAGTCTGCTTTTTTCCTCTTATATCAATCAA
AATTAGTTAGGCCAATGGCAAGTCTCAAAATTTGAAGCCCGTATCCAATT
AACTAAGCGTTAGAATTGTATTAATCATATTACCACGTTTCCATTTATAT
CTAATTTAATAACAACTTTCAAAAgcaaatgggccattccattttaaatC
CATACAAGGGGGTGAGCGAACGTTTCCAGAGAgtaatccgagaaaaattt
TCCTGGGGCTgtattttagttcgtccaccctcaaaTTTAAGGTATTAAAA
CAATCTTTCCAAGggtacttttgcaaatttttccagTTTGCAGGGGGTAT
TCACACATTTTCGATATTCTTTTTTGGAAAGGTTCGTTTACcgcctgtat
ggttttttaatgggaCAGCCCAATTGGGTCATCTTCAtaaaacacccctt
tctcacagacccactggaaacccTTCCCACAGAAAGAAATAGGCCAAATA
TCGtttccggtggaaaattatactacaatttttgtccccactgaaaataa
tcaaacaaaccaatcctcactgcacaattttatgctatttgacttgaaac
aatggaatttaaatccccagtcataaagAATTCGGGAATACCAATCCCTA
TCGAgcttcagtccgttatttttaccctcgGCTGATaaaattctaccggg
tctgtgagaataaAGGGTTGTCATAAAGCTTCACCATCCTATATATCTAC
GTTtgaacgtccatctaacgttatatggatgacGAGAATGTTAGATGGGC
ATTGATAAGACGTTTTGTGTCATATAGAACAGTTGTAACAAGCTGAGAAA
AATCAACTAATAATCCAATGGTACGATTTagttcaccaaattttggtaaa
aatgcTCGAACTTTGATGAGATTCGACAAGAAATTCAAATGTGATGCCAT
TTTTCACTCTTTTTCAAGCAACAATTTGAAACTGCCAACTATCCATAGAT
CTGTCTTCCATCTCCTACATCAATCGAAGCAAAGGCAGATCTACACAGTT
CCAAGATAAGAGAGTTAACTCATCCTCTCAAGGTTATTTATCCCAATAAA
GCTATATTCACCAGATCCTATAGTCGACTTTCTTGGTAACTTTGACGGTT
GCCAGTGATTCTTGATCTTCCCTCAAATCATTCACAAACAATCGAATGTT
CAAATTCAACGTTTTATATCGatataaaatttgcaaatttctCACATTCA
ATTCCAGCGTTAATCGAACTTGTAGTTTATCATCACCACCTTCCGCAACT
TTGAATTTATCCATAATGTTTATGTTTAAATTAACTTTAATCTTATTAGT
CAATTTTAAACATTTCGAACGATGAACAACTGTCGGTGCCGTATTTTTGG
CTTTAACATTTTTACTGCTTGGTTCAATATGATGCTTCTGCCTTGCCACC
ATCATGGTTTTATCCACTTTATTTTCAAACGATATATCGAATTTGCTTTG
TGCTCACCAGTATTTACAAACATGATCTAAGTGATCTTCAACATGGATTT
CTTCACAAAAACATAAATATGTAACTGAAAACTTTCTTTATCAAACCAAT
CATGGAATCTTATGCAAATCTCAAGtcagtttttgttgatttttgt Run BLAST on NCBI protein sequence of TCONS_00018750-protein >TCONS_00018750-protein ID=TCONS_00018750-protein|Name=TCONS_00018750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MMVARQKHHIEPSSKNVKAKNTAPTVVHRSKCLKLTNKIKVNLNINIMDK
FKVAEGGDDKLQVRLTLELNVRNLQILYRYKTLNLNIRLFVNDLREDQES
LATVKVTKKVDYRIW Run BLAST on NCBI transcript from alignment at sc0000305:7420..10165 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018750 ID=TCONS_00018750|Name=TCONS_00018750|organism=Clytia hemisphaerica|type=transcript|length=2746bp|location=Sequence derived from alignment at sc0000305:7420..10165 (Clytia hemisphaerica)
acaaaaatcaacaaaaactgaCTTGAGATTTGCATAAGATTCCATGATTG
GTTTGATAAAGAAAGTTTTCAGTTACATATTTATGTTTTTGTGAAGAAAT
CCATGTTGAAGATCACTTAGATCATGTTTGTAAATACTGGTGAGCACAAA
GCAAATTCGATATATCGTTTGAAAATAAAGTGGATAAAACCATGATGGTG
GCAAGGCAGAAGCATCATATTGAACCAAGCAGTAAAAATGTTAAAGCCAA
AAATACGGCACCGACAGTTGTTCATCGTTCGAAATGTTTAAAATTGACTA
ATAAGATTAAAGTTAATTTAAACATAAACATTATGGATAAATTCAAAGTT
GCGGAAGGTGGTGATGATAAACTACAAGTTCGATTAACGCTGGAATTGAA
TGTGagaaatttgcaaattttatatCGATATAAAACGTTGAATTTGAACA
TTCGATTGTTTGTGAATGATTTGAGGGAAGATCAAGAATCACTGGCAACC
GTCAAAGTTACCAAGAAAGTCGACTATAGGATCTGGTGAATATAGCTTTA
TTGGGATAAATAACCTTGAGAGGATGAGTTAACTCTCTTATCTTGGAACT
GTGTAGATCTGCCTTTGCTTCGATTGATGTAGGAGATGGAAGACAGATCT
ATGGATAGTTGGCAGTTTCAAATTGTTGCTTGAAAAAGAGTGAAAAATGG
CATCACATTTGAATTTCTTGTCGAATCTCATCAAAGTTCGAgcattttta
ccaaaatttggtgaactAAATCGTACCATTGGATTATTAGTTGATTTTTC
TCAGCTTGTTACAACTGTTCTATATGACACAAAACGTCTTATCAATGCCC
ATCTAACATTCTCgtcatccatataacgttagatggacgttcaAACGTAG
ATATATAGGATGGTGAAGCTTTATGACAACCCTttattctcacagacccg
gtagaattttATCAGCcgagggtaaaaataacggactgaagcTCGATAGG
GATTGGTATTCCCGAATTctttatgactggggatttaaattccattgttt
caagtcaaatagcataaaattgtgcagtgaggattggtttgtttgattat
tttcagtggggacaaaaattgtagtataattttccaccggaaaCGATATT
TGGCCTATTTCTTTCTGTGGGAAgggtttccagtgggtctgtgagaaagg
ggtgttttaTGAAGATGACCCAATTGGGCTGtcccattaaaaaaccatac
aggcgGTAAACGAACCTTTCCAAAAAAGAATATCGAAAATGTGTGAATAC
CCCCTGCAAActggaaaaatttgcaaaagtaccCTTGGAAAGATTGTTTT
AATACCTTAAAtttgagggtggacgaactaaaatacAGCCCCAGGAaaat
ttttctcggattacTCTCTGGAAACGTTCGCTCACCCCCTTGTATGGatt
taaaatggaatggcccatttgcTTTTGAAAGTTGTTATTAAATTAGATAT
AAATGGAAACGTGGTAATATGATTAATACAATTCTAACGCTTAGTTAATT
GGATACGGGCTTCAAATTTTGAGACTTGCCATTGGCCTAACTAATTTTGA
TTGATATAAGAGGAAAAAAGCAGACTTTGTTCAAGACAAAAAGAGGAAAT
AAGTTGATACGTAAAACCGCAATGACGCAAAAAATACAGTAAAATACACG
GAAATGATGATTTTCGACTTTGTTAAAAGAGGAAATTTTATATGGTGAAG
CTCTTGACAATTAAGTAATAAACTTTCTTCTGTTctacaaaatgataaaa
aagatCTCAAGTAGAGCTTATACCttattttagattatttttccAGTCGT
CGGGTACAAAGAAATATTCTTGAATAGTATAAAAATTGATACAGGCCTAG
CGGAAACCTTTAGgcaaaatagactttttttctCCGGCGATTCCTGGTGA
ATTCAATCTCATTTCGAGCATTTAGTGCCTCCACTTTAACGGTTGTTCTG
CCGGGCTGGGGTAAGCCCTGCTTAGCCAGCACCCAAAAACGATACTACGA
CAAAATAATATCGAATTTATGCtcgttcttcattttttctagaAATCTGA
AATTTCAAAGTTAGTATAAAACTTctatcaatacaccttttcgaccgtag
tcgtgcggtcgatccaatccttttttgacacatttctctattgtctatag
gtgcgaaaaaaggactggaacGGTTCATCGATGGACGCTTTTAGTGGGAT
GAAGCGGACAAAAAAGTGCCCGCGCGGTAATTGgaagctacggtcgaaaa
ggtgtataaatTTCCGAAGGCTCCTCTCTGTATATGCATTTTATGACGTT
GAAGTATCTAAAACATGTTTGAAATTTGCGGAAATGATATACGGAACAAT
ATGGAAATTTGATAACCGGATTTCAATCATACCggaaatacaaaaatatt
gtAACTTCTTATGAATGGATTGTAAATAGATTTAAGTAATATTCTAGTTA
TGTGTACAAGTGTGGTTTTATTTTGCGGTGAGATACTGTACAAATTTTTA
ATAAAGGAATTTTTTCTCGGGAAATAGAATTTGATTAATATATTGTAGTT
ATTGTCGTGCTAGATCATGAACTTTAGGCCCCTGTTGTTTTGAAATCCAT
AAGAgccacccagctggcacacaacgctgtttcaacgttcatctaaagtT
ATGTGGACGCTTCGAACGTTAGGCTAACGTTAAATCAACGTTGATT Coding sequence (CDS) from alignment at sc0000305:7420..10165 >TCONS_00018750 ID=TCONS_00018750|Name=TCONS_00018750|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0000305:7420..10165 (Clytia hemisphaerica)
ATGATGGTGGCAAGGCAGAAGCATCATATTGAACCAAGCAGTAAAAATGT
TAAAGCCAAAAATACGGCACCGACAGTTGTTCATCGTTCGAAATGTTTAA
AATTGACTAATAAGATTAAAGTTAATTTAAACATAAACATTATGGATAAA
TTCAAAGTTGCGGAAGGTGGTGATGATAAACTACAAGTTCGATTAACGCT
GGAATTGAATGTGagaaatttgcaaattttatatCGATATAAAACGTTGA
ATTTGAACATTCGATTGTTTGTGAATGATTTGAGGGAAGATCAAGAATCA
CTGGCAACCGTCAAAGTTACCAAGAAAGTCGACTATAGGATCTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018750-exon-sc0000305-1491911889:7420..10165 | TCONS_00018750-exon-sc0000305-1491911889:7420..10165 | Clytia hemisphaerica | exon |
| TCONS_00018750-exon-sc0000305-1510915933:7420..10165 | TCONS_00018750-exon-sc0000305-1510915933:7420..10165 | Clytia hemisphaerica | exon |
| TCONS_00018750-exon-sc0000305-1575043694:7420..10165 | TCONS_00018750-exon-sc0000305-1575043694:7420..10165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000305 | supercontig | sc0000305:7420..10165 . |
Blast
The following BLAST results are available for this feature:
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