TCONS_00018753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018753
Unique NameTCONS_00018753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018753 ID=TCONS_00018753|Name=TCONS_00018753|organism=Clytia hemisphaerica|type=transcript|length=876bp
ccttttagCAAATTTAATTGGAGGCATATTTCAGGTGCAAACTTTCGGGG
AGTAGTTCTTCAAAAAGGTAAAATTACCGGGAGAATATATAAGTATTTCC
CACAATTTGTCAAAGTAGAGCCAggccacagatatctaagcccgaagggc
tagataggcaactttaagctttctccagcaaaaaaaaagtgaagcaaaaa
tttgactttttaaatttcgtgccgatggataggatctagcattttaattg
ttttcggagcgcgagatcaaaaaacgtaggcagcaaacgctatttcacat
ctctcaaaccggtgaagttgcatattttagtcacgtgactttggtaggaa
atccttccaaacctaagCTTcgcttttcgataaaagccgcaaatctagcc
cttcgggctttacagatatctgtgagcCAGGCGTCTCTGTATTTTCTAAA
TCTCATATTTCATCGATGTGCATTTGTTAATTCATAACAAATAATTTTAG
TTTAAGAATTAAAAACTACTTAAGAATTATATTGTTCGCCATTATACAAT
GGTAATTAGCCAGAAAATGCAAGCgaatagttttttttatttagtcacgt
gatcaaaacgAATTATCAATCTAAAGTCGTTTAGTTGGGTTACATGACAT
TGCTATTCCACTACAATATTGTTGACAAATCTCTGACGCGAATTTcgtca
atagacgatatcggctttccgaattctccacGAATGTCTATTCATCGAAG
TGCGTGGATATAATGAATGTCAACCTCGAATTCCTGACTAAAAAACCTTA
CTTCCagcaaggacacttgtatagcgaagCTGGACTGAGTACAACGGcta
tttctctttttctttttaacacaTGT
Run BLAST on NCBI

transcript from alignment at sc0000305:134349..135224

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018753 ID=TCONS_00018753|Name=TCONS_00018753|organism=Clytia hemisphaerica|type=transcript|length=876bp|location=Sequence derived from alignment at sc0000305:134349..135224 (Clytia hemisphaerica)
ACAtgtgttaaaaagaaaaagagaaatagCCGTTGTACTCAGTCCAGctt
cgctatacaagtgtccttgctGGAAGTAAGGTTTTTTAGTCAGGAATTCG
AGGTTGACATTCATTATATCCACGCACTTCGATGAATAGACATTCgtgga
gaattcggaaagccgatatcgtctattgacgAAATTCGCGTCAGAGATTT
GTCAACAATATTGTAGTGGAATAGCAATGTCATGTAACCCAACTAAACGA
CTTTAGATTGATAATTcgttttgatcacgtgactaaataaaaaaaactat
tcGCTTGCATTTTCTGGCTAATTACCATTGTATAATGGCGAACAATATAA
TTCTTAAGTAGTTTTTAATTCTTAAACTAAAATTATTTGTTATGAATTAA
CAAATGCACATCGATGAAATATGAGATTTAGAAAATACAGAGACGCCTGg
ctcacagatatctgtaaagcccgaagggctagatttgcggcttttatcga
aaagcgAAGcttaggtttggaaggatttcctaccaaagtcacgtgactaa
aatatgcaacttcaccggtttgagagatgtgaaatagcgtttgctgccta
cgttttttgatctcgcgctccgaaaacaattaaaatgctagatcctatcc
atcggcacgaaatttaaaaagtcaaatttttgcttcactttttttttgct
ggagaaagcttaaagttgcctatctagcccttcgggcttagatatctgtg
gccTGGCTCTACTTTGACAAATTGTGGGAAATACTTATATATTCTCCCGG
TAATTTTACCTTTTTGAAGAACTACTCCCCGAAAGTTTGCACCTGAAATA
TGCCTCCAATTAAATTTGctaaaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010497XLOC_010497Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018753-exon-sc0000305-1491911889:134349..135224TCONS_00018753-exon-sc0000305-1491911889:134349..135224Clytia hemisphaericaexon
TCONS_00018753-exon-sc0000305-1510915933:134349..135224TCONS_00018753-exon-sc0000305-1510915933:134349..135224Clytia hemisphaericaexon
TCONS_00018753-exon-sc0000305-1575043694:134349..135224TCONS_00018753-exon-sc0000305-1575043694:134349..135224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:134349..135224 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.433199	0.262678	0.80784	0.262076	3.43429	2.40668	3.66223	4.13369	2.16337	1.1569	2.81125	1.95894	1.96558	1.03096	0.586043	0.582564	1.19996	1.50049	0.309792	0.914035	2.85911	1.89306	0.336305	0.532261	6.77101	7.75367	2.32653	3.26751	2.65313	1.60524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top