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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018768 ID=TCONS_00018768|Name=TCONS_00018768|organism=Clytia hemisphaerica|type=transcript|length=1545bp
AGAGAAACAATagaaacacaaaaataaaaaaggtataCTTGCAAAGACAG
AGATTGACTATGGAAGGCGATAAAGAATTAAGGAAATCCATTCAAGCTAA
TTTGGGCCGCTGGATCAAAAAGTTGAGTTGTGATGGTGATGCTGTTGAGA
AATTaagatataaaatgaaatttgtgaAACAGTTGAAGGAAATGCCGATc
gctatcaaaacaaaagaagcaaATGATCAACATTATGAGGTGGATACAGA
TTTTTATCTCACTATCCTTGGAGACAGGTTGAAATACAGTAGTTGCTATT
TCCCATCCGAGTCGAGTACATTAGAGGAGGCTGAAGACTGCATGTTAGAG
ATGATTTGTGATAGAGCACGTGTTACCGATGGATTGAAAATAATGGATTT
GGGATGTGGTTGGGGTGTGACTGGATTATACATTGTGGAGAAATTCCGGA
ATTGTGATGTCACATGTATTTCCAATTCGTCAACTCAAGCTGCACTGATC
AACAAAAGGGCTGCTGAGAGAGGGTATTCTAACAGATTGAGATGTATCAC
AGCTGATGCTAACGTCTTCACCACAGAGGAAAGGTTTGACCGTATCATCT
CTGTTGAAATGTTTGAGCACATGAAGAATTATGATAACCTGATGTCTCGT
GTATCTTCATGGTTGAAACCTGCTGGTTACCTATTCACACATATTTTGTG
TCACCGTGAATATTGTTATCACTTCAAAGAGAGCAAGGATGAGGCTACTG
GCTGGATGGCTAAACATTTTTTCAGCGGTGGCACCATGCCTTCCAGCGAT
CTATTTCTGTATTTCCAGAAAGATTTGAGTGTAGTTGACCACTGGAATGT
CAATGGCATCCATTACTCAAGAACCCTGGAGGCTTGGCTAGACCGGTTAG
ACGCCAACCGTGACCGTGTTTATGAGATCTTGCACCGCCAACATGGAGAT
GAAACAGATAAGCAGATTTTTAACTGGCGCATGTTTTTCATTTATTGTTC
AGAAGTTTTCAAATATGATGGTGGCAATGAATGGTTGGTGTCTCACCATT
TGTTTCAAAAGAACCAACATTGCAAATTGTAGGCTCTGGTGATGTCGACA
GAACTGATGTCTAAGTTAGATTAGATTATTGGTTGGAAGGCTTAAGAAAt
ggttttaattttattcaCTGTGTAGGAAGATTTTCAGAATAAATTGAGAA
ACACGGCTGACTTAACCCGTGATATATTCAaccaatagatcttatcggag
tttttgatttttctaaaaaagcgatgcattgttgGATTGTTTCAGGAGTa
ttaaaatagaaatctcttaggaattcctcaagggaattctattgtagtac
tcccgaaacaatcccacaatgcatcgtttttttagaaaaatcgaaaattc
cgataagatctattcatCAAATATATTGTAGATAATATGTAGACCAGCTT
ACTTTGATTGATATAATCAAAAAGTTATAATATGATTTATACGTATTTTT
GACTCTTTCTTTGATTTGAGTGCAAACTTTATTAATCATAACATT Run BLAST on NCBI protein sequence of TCONS_00018768-protein >TCONS_00018768-protein ID=TCONS_00018768-protein|Name=TCONS_00018768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
RNNRNTKIKKVYLQRQRLTMEGDKELRKSIQANLGRWIKKLSCDGDAVEK
LRYKMKFVKQLKEMPIAIKTKEANDQHYEVDTDFYLTILGDRLKYSSCYF
PSESSTLEEAEDCMLEMICDRARVTDGLKIMDLGCGWGVTGLYIVEKFRN
CDVTCISNSSTQAALINKRAAERGYSNRLRCITADANVFTTEERFDRIIS
VEMFEHMKNYDNLMSRVSSWLKPAGYLFTHILCHREYCYHFKESKDEATG
WMAKHFFSGGTMPSSDLFLYFQKDLSVVDHWNVNGIHYSRTLEAWLDRLD
ANRDRVYEILHRQHGDETDKQIFNWRMFFIYCSEVFKYDGGNEWLVSHHL
FQKNQHCKL Run BLAST on NCBI transcript from alignment at sc0000306:96893..100271+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018768 ID=TCONS_00018768|Name=TCONS_00018768|organism=Clytia hemisphaerica|type=transcript|length=3379bp|location=Sequence derived from alignment at sc0000306:96893..100271+ (Clytia hemisphaerica)
AGAGAAACAATagaaacacaaaaataaaaaaggtataCTTGCAAAGACAG
AGATTGACTATGGAAGGCGATAAAGAATTAAGGAAATCCATTCAAGCTAA
TTTGGGCCGCTGGATCAAAAAGTTGAGTTGTGATGGTGATGCTGTTGAGA
AATTaagatataaaatgaaatttgtgaAACAGTTGAAGGAAATGCCGATc
gctatcaaaacaaaagaagcaaATGATCAACATTATGAGGTAAATGCGAT
GTTTTGTAAAAGTTTTCTCCTTCACACGGTTTCCTGTTAAAAGGATTNat
caattacttaggtattagattgattggctctttcattttctacgattttt
tgcataaagattcataattataaaccctcaaatgtgacgggcCCGATTTT
TGGAGAGANtggacctaccccggtggaggtcctataaattaacctttgtc
cgtctgtccgtccgtctgtccgtccgtccgttagttaccagcttttctca
agattggctcattagttttttctgacttttttcacaatgatgcaaaatgg
caatgcccaaaatgtgacggagtccgattttcgaaaaaaaaatttttgNG
GGgtatatttcagctaaaaaaacgtgacctaacttataaacgtgttaaat
gcataatccaggtaggtccatcaaagtatcacttgttttggtcatttttc
atgaTAACTGATTAGTGGCAACTGGAAAGGGAAAGTCACTTGGAATAACA
ACCTTGGACAATCAGTATTTTGAAGGTTGAGGAGTGCCAAACATTAATCA
AGGATCTTGTCTATGAAAATATCCTTGCTTCATTCAGATTTCTAcacatt
ttttcatgttttaaacTTCTGTAAAACTTTATCTTAAAGGTGGATACAGA
TTTTTATCTCACTATCCTTGGAGACAGGTTGAAANagggtaccatcatag
gtataagatggctcaagcagatttttgcaaaaaaattttgttggctcaaa
aaacgcatgtttatctataagaatcaatattaataagcatacatcgatgt
tcttagtcaaGNAATACAGTAGTTGCTATTTCCCATCCGAGTCGAGTACA
TTAGAGGAGGCTGAAGACTGCATGTTAGAGATGATTTGTGATAGAGCACG
TGTTACCGATGGATTGAAAATAATGGATTTGGGATGTGGTTGGGGTGTGA
CTGGATTATACATTGTGGAGAAATTCCGGAATTGTGATGTCACATGTATT
TCCAATTCGTCAACTCAAGCTGCATTGATCAACAAAAGGGCTGCTGAGAG
AGGGTATGAATGTGGTTTTGTATTATTTAgagaagatttttttaaagact
tccagttgatacatttttatttgTTCTATATTTTGTCTAANaattcgata
tttttttataagcacattatcaattacttaggtattggcttttctcgaga
ttggctctttcattctttatgatttttacacatagatgcataactataaa
cccttgaatgtgacaggacccgattttctaaaaaaaatgtttttgggcaa
atttgggtNTAAGTTTTCTCCTTCACACGGTTTCCTGTTAAAAggattaa
tttttttggtcatttttcatgaTAATTTATAAGTGGTTAACTGGAAAGGG
ATAGTCACTTGGAATAACAACTGATGATTTCTTTTCCAAACTTTTGAGAA
TGTAAAACCTTGGGTTGGAAAATCAGTATTTTAATGGTTGAAGAGTGCCA
AACATTAATCAAGGATCTTGTCTATGAAAATATCCTTGCTTCATTCAGAT
TTCTAcacattttttcatgttttaaacTTCTGTAAAACTTTATCTTTAAA
GGTGGATACAGATTTTTATCTCACTATCCTTGGAGACAGGTTGAAATACA
GTAGTTGCTATTTCCCATCCGAGTCGAGTACATTAGAGGAGGCTGAAGAC
TGCATGTTAGAGATGATTTGTGATAGAGCACGTGTTACCGATGGATTGAA
AATAATGGATTTGGGATGTGGTTGGGGTGTGACTGGATTATACATTGTGG
AGAAATTCCGGAATTGTGATGTCACATGTATTTCCAATTCGTCAACTCAA
GCTGCACTGATCAACAAAAGGGCTGCTGAGAGAGGGTATGAATGTGGTTT
TGTATTATTTAGAGAAGATCTTTTAAAAGACTTCCAgttgatacattttt
atttgTTCTATATTTTGTCTCAATGAttagtattttttcattaaattttg
tcaTCCTTCATTAAAATCTAGCTCAAAATGACATCAGTCCCATCTGAAAA
GCCAGAGAGGATAGGAGAATTATAACAatacttttaaaaagtatttcttt
taaacagGTATTCTAACAGATTGAGATGTATCACAGCTGATGCTAACGTC
TTCACCACAGAGGAAAGGTTTGACCGTATCATCTCTGTTGAAATGTTTGA
GCACATGAAGAATTATGATAACCTGATGTCTCGTGTATCTTCATGGTTGA
AACCTGCTGGTTACCTATTCACACATATTTTGTGTCACCGTGAATATTGT
TATCACTTCAAAGAGAGCAAGGATGAGGCTACTGGCTGGATGGCTAAACA
TTTTTTCAGCGGTGGCACCATGCCTTCCAGCGATCTATTTCTGTATTTCC
AGAAAGATTTGAGTGTAGTTGACCACTGGAATGTCAATGGCATCCATTAC
TCAAGAACCCTGGAGGCTTGGCTAGACCGGTTAGACGCCAACCGTGACCG
TGTTTATGAGATCTTGCACCGCCAACATGGAGATGAAACAGATAAGCAGA
TTTTTAACTGGCGCATGTTTTTCATTTATTGTTCAGAAGTTTTCAAATAT
GATGGTGGCAATGAATGGTTGGTGTCTCACCATTTGTTTCAAAAGAACCA
ACATTGCAAATTGTAGGCTCTGGTGATGTCGACAGAACTGATGTCTAAGT
TAGATTAGATTATTGGTTGGAAGGCTTAAGAAAtggttttaattttattc
aCTGTGTAGGAAGATTTTCAGAATAAATTGAGAAACACGGCTGACTTAAC
CCGTGATATATTCAaccaatagatcttatcggagtttttgatttttctaa
aaaagcgatgcattgttgGATTGTTTCAGGAGTattaaaatagaaatctc
ttaggaattcctcaagggaattctattgtagtactcccgaaacaatccca
caatgcatcgtttttttagaaaaatcgaaaattccgataagatctattca
tCAAATATATTGTAGATAATATGTAGACCAGCTTACTTTGATTGATATAA
TCAAAAAGTTATAATATGATTTATACGTATTTTTGACTCTTTCTTTGATT
TGAGTGCAAACTTTATTAATCATAACATT Coding sequence (CDS) from alignment at sc0000306:96893..100271+ >TCONS_00018768 ID=TCONS_00018768|Name=TCONS_00018768|organism=Clytia hemisphaerica|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0000306:96893..100271+ (Clytia hemisphaerica)
AGAAACAATagaaacacaaaaataaaaaaggtataCTTGCAAAGACAGAG
ATTGACTATGGAAGGCGATAAAGAATTAAGGAAATCCATTCAAGCTAATT
TGGGCCGCTGGATCAAAAAGTTGAGTTGTGATGGTGATGCTGTTGAGAAA
TTaagatataaaatgaaatttgtgaAACAGTTGAAGGAAATGCCGATcgc
tatcaaaacaaaagaagcaaATGATCAACATTATGAGGTGGATACAGATT
TTTATCTCACTATCCTTGGAGACAGGTTGAAATACAGTAGTTGCTATTTC
CCATCCGAGTCGAGTACATTAGAGGAGGCTGAAGACTGCATGTTAGAGAT
GATTTGTGATAGAGCACGTGTTACCGATGGATTGAAAATAATGGATTTGG
GATGTGGTTGGGGTGTGACTGGATTATACATTGTGGAGAAATTCCGGAAT
TGTGATGTCACATGTATTTCCAATTCGTCAACTCAAGCTGCACTGATCAA
CAAAAGGGCTGCTGAGAGAGGGTATTCTAACAGATTGAGATGTATCACAG
CTGATGCTAACGTCTTCACCACAGAGGAAAGGTTTGACCGTATCATCTCT
GTTGAAATGTTTGAGCACATGAAGAATTATGATAACCTGATGTCTCGTGT
ATCTTCATGGTTGAAACCTGCTGGTTACCTATTCACACATATTTTGTGTC
ACCGTGAATATTGTTATCACTTCAAAGAGAGCAAGGATGAGGCTACTGGC
TGGATGGCTAAACATTTTTTCAGCGGTGGCACCATGCCTTCCAGCGATCT
ATTTCTGTATTTCCAGAAAGATTTGAGTGTAGTTGACCACTGGAATGTCA
ATGGCATCCATTACTCAAGAACCCTGGAGGCTTGGCTAGACCGGTTAGAC
GCCAACCGTGACCGTGTTTATGAGATCTTGCACCGCCAACATGGAGATGA
AACAGATAAGCAGATTTTTAACTGGCGCATGTTTTTCATTTATTGTTCAG
AAGTTTTCAAATATGATGGTGGCAATGAATGGTTGGTGTCTCACCATTTG
TTTCAAAAGAACCAACATTGCAAATTGTAGAGAAACAATagaaacacaaa
aataaaaaaggtataCTTGCAAAGACAGAGATTGACTATGGAAGGCGATA
AAGAATTAAGGAAATCCATTCAAGCTAATTTGGGCCGCTGGATCAAAAAG
TTGAGTTGTGATGGTGATGCTGTTGAGAAATTaagatataaaatgaaatt
tgtgaAACAGTTGAAGGAAATGCCGATcgctatcaaaacaaaagaagcaa
ATGATCAACATTATGAGGTGGATACAGATTTTTATCTCACTATCCTTGGA
GACAGGTTGAAATACAGTAGTTGCTATTTCCCATCCGAGTCGAGTACATT
AGAGGAGGCTGAAGACTGCATGTTAGAGATGATTTGTGATAGAGCACGTG
TTACCGATGGATTGAAAATAATGGATTTGGGATGTGGTTGGGGTGTGACT
GGATTATACATTGTGGAGAAATTCCGGAATTGTGATGTCACATGTATTTC
CAATTCGTCAACTCAAGCTGCACTGATCAACAAAAGGGCTGCTGAGAGAG
GGTATTCTAACAGATTGAGATGTATCACAGCTGATGCTAACGTCTTCACC
ACAGAGGAAAGGTTTGACCGTATCATCTCTGTTGAAATGTTTGAGCACAT
GAAGAATTATGATAACCTGATGTCTCGTGTATCTTCATGGTTGAAACCTG
CTGGTTACCTATTCACACATATTTTGTGTCACCGTGAATATTGTTATCAC
TTCAAAGAGAGCAAGGATGAGGCTACTGGCTGGATGGCTAAACATTTTTT
CAGCGGTGGCACCATGCCTTCCAGCGATCTATTTCTGTATTTCCAGAAAG
ATTTGAGTGTAGTTGACCACTGGAATGTCAATGGCATCCATTACTCAAGA
ACCCTGGAGGCTTGGCTAGACCGGTTAGACGCCAACCGTGACCGTGTTTA
TGAGATCTTGCACCGCCAACATGGAGATGAAACAGATAAGCAGATTTTTA
ACTGGCGCATGTTTTTCATTTATTGTTCAGAAGTTTTCAAATATGATGGT
GGCAATGAATGGTTGGTGTCTCACCATTTGTTTCAAAAGAACCAACATTG
CAAATTGTAGAGAAACAATagaaacacaaaaataaaaaaggtataCTTGC
AAAGACAGAGATTGACTATGGAAGGCGATAAAGAATTAAGGAAATCCATT
CAAGCTAATTTGGGCCGCTGGATCAAAAAGTTGAGTTGTGATGGTGATGC
TGTTGAGAAATTaagatataaaatgaaatttgtgaAACAGTTGAAGGAAA
TGCCGATcgctatcaaaacaaaagaagcaaATGATCAACATTATGAGGTG
GATACAGATTTTTATCTCACTATCCTTGGAGACAGGTTGAAATACAGTAG
TTGCTATTTCCCATCCGAGTCGAGTACATTAGAGGAGGCTGAAGACTGCA
TGTTAGAGATGATTTGTGATAGAGCACGTGTTACCGATGGATTGAAAATA
ATGGATTTGGGATGTGGTTGGGGTGTGACTGGATTATACATTGTGGAGAA
ATTCCGGAATTGTGATGTCACATGTATTTCCAATTCGTCAACTCAAGCTG
CACTGATCAACAAAAGGGCTGCTGAGAGAGGGTATTCTAACAGATTGAGA
TGTATCACAGCTGATGCTAACGTCTTCACCACAGAGGAAAGGTTTGACCG
TATCATCTCTGTTGAAATGTTTGAGCACATGAAGAATTATGATAACCTGA
TGTCTCGTGTATCTTCATGGTTGAAACCTGCTGGTTACCTATTCACACAT
ATTTTGTGTCACCGTGAATATTGTTATCACTTCAAAGAGAGCAAGGATGA
GGCTACTGGCTGGATGGCTAAACATTTTTTCAGCGGTGGCACCATGCCTT
CCAGCGATCTATTTCTGTATTTCCAGAAAGATTTGAGTGTAGTTGACCAC
TGGAATGTCAATGGCATCCATTACTCAAGAACCCTGGAGGCTTGGCTAGA
CCGGTTAGACGCCAACCGTGACCGTGTTTATGAGATCTTGCACCGCCAAC
ATGGAGATGAAACAGATAAGCAGATTTTTAACTGGCGCATGTTTTTCATT
TATTGTTCAGAAGTTTTCAAATATGATGGTGGCAATGAATGGTTGGTGTC
TCACCATTTGTTTCAAAAGAACCAACATTGCAAATTGTAGAGAAACAATa
gaaacacaaaaataaaaaaggtataCTTGCAAAGACAGAGATTGACTATG
GAAGGCGATAAAGAATTAAGGAAATCCATTCAAGCTAATTTGGGCCGCTG
GATCAAAAAGTTGAGTTGTGATGGTGATGCTGTTGAGAAATTaagatata
aaatgaaatttgtgaAACAGTTGAAGGAAATGCCGATcgctatcaaaaca
aaagaagcaaATGATCAACATTATGAGGTGGATACAGATTTTTATCTCAC
TATCCTTGGAGACAGGTTGAAATACAGTAGTTGCTATTTCCCATCCGAGT
CGAGTACATTAGAGGAGGCTGAAGACTGCATGTTAGAGATGATTTGTGAT
AGAGCACGTGTTACCGATGGATTGAAAATAATGGATTTGGGATGTGGTTG
GGGTGTGACTGGATTATACATTGTGGAGAAATTCCGGAATTGTGATGTCA
CATGTATTTCCAATTCGTCAACTCAAGCTGCACTGATCAACAAAAGGGCT
GCTGAGAGAGGGTATTCTAACAGATTGAGATGTATCACAGCTGATGCTAA
CGTCTTCACCACAGAGGAAAGGTTTGACCGTATCATCTCTGTTGAAATGT
TTGAGCACATGAAGAATTATGATAACCTGATGTCTCGTGTATCTTCATGG
TTGAAACCTGCTGGTTACCTATTCACACATATTTTGTGTCACCGTGAATA
TTGTTATCACTTCAAAGAGAGCAAGGATGAGGCTACTGGCTGGATGGCTA
AACATTTTTTCAGCGGTGGCACCATGCCTTCCAGCGATCTATTTCTGTAT
TTCCAGAAAGATTTGAGTGTAGTTGACCACTGGAATGTCAATGGCATCCA
TTACTCAAGAACCCTGGAGGCTTGGCTAGACCGGTTAGACGCCAACCGTG
ACCGTGTTTATGAGATCTTGCACCGCCAACATGGAGATGAAACAGATAAG
CAGATTTTTAACTGGCGCATGTTTTTCATTTATTGTTCAGAAGTTTTCAA
ATATGATGGTGGCAATGAATGGTTGGTGTCTCACCATTTGTTTCAAAAGA
ACCAACATTGCAAATTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018768-exon-sc0000306-1491911889:96893..97131 | TCONS_00018768-exon-sc0000306-1491911889:96893..97131 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1510915933:96893..97131 | TCONS_00018768-exon-sc0000306-1510915933:96893..97131 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1575043694:96893..97131 | TCONS_00018768-exon-sc0000306-1575043694:96893..97131 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1491911889:97782..97819 | TCONS_00018768-exon-sc0000306-1491911889:97782..97819 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1510915933:97782..97819 | TCONS_00018768-exon-sc0000306-1510915933:97782..97819 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1575043694:97782..97819 | TCONS_00018768-exon-sc0000306-1575043694:97782..97819 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1491911889:98782..99027 | TCONS_00018768-exon-sc0000306-1491911889:98782..99027 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1510915933:98782..99027 | TCONS_00018768-exon-sc0000306-1510915933:98782..99027 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1575043694:98782..99027 | TCONS_00018768-exon-sc0000306-1575043694:98782..99027 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1491911889:99250..100271 | TCONS_00018768-exon-sc0000306-1491911889:99250..100271 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1510915933:99250..100271 | TCONS_00018768-exon-sc0000306-1510915933:99250..100271 | Clytia hemisphaerica | exon |
| TCONS_00018768-exon-sc0000306-1575043694:99250..100271 | TCONS_00018768-exon-sc0000306-1575043694:99250..100271 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000306 | supercontig | sc0000306:96893..100271 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003333 | Mycolic_cyclopropane_synthase |
| IPR029063 | SAM-dependent_MTases |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008610 | lipid biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008610 |
lipid biosynthetic process |
Blast
The following BLAST results are available for this feature:
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