TCONS_00018785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018785
Unique NameTCONS_00018785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018785 ID=TCONS_00018785|Name=TCONS_00018785|organism=Clytia hemisphaerica|type=transcript|length=1436bp
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATT
ACCCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGC
ACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAAC
CGCTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTT
TGGGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCT
TCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCTT
GAGAATGTCAGTTGGGCTAGAGGAAGCAGAAGACCTCGTCGCTGATATTG
AACAAGCTTTAGCTGCTGCCAACAATTAATTTTGGGTGACGGTATGTAAT
TTTTTTGGTGTTGACGAAAAAAATGACtgaattttatttataaaatggAC
ATgtctaattttattttttagaaaaagaaaaatctattttattttgttat
ttatatCAGCAATTaaaattcaaccaaaaatattttaggtatttttcagt
tgatgatttgttttttatgaaagtaagtttgaaaaattcgGTTTCAggtt
tatgttttaaaatttgcTTTTTGAGGAACATCTTTTATTATTGAAGGATT
ATTTTccctgttttttttatttctaaattcTCTTTTTCAATTTAGAAACC
TTTCGCACTTAAGAACCATGATACTAATTTTTAGGGATTtctagattttt
aaaagaatagtaaaattgataaaaaattgaaagataaaGATCTAATAGTG
ACattgcaaaaatttttcttttttctgtttgAAACCATCcccatttaaat
tttttttctgtttttaggtttgagatattttaagCTTTTAGTCACCCAAT
ACTCCAGTTTTTTACATAACAGCGAGGCTCAAAAACGCTGAGAAATGAGA
ACAGTTAAAGAACAAAGCTGAGCCTGGAATTTCTTAATTTCAAGTGAgtc
aaaaacgtaaaaatttgattgaaacCTAAATTGCCTCTATTTTGACCGAA
AATAAAACAGTATTACGAGAATTTTGTGCCGCAAGTGCCTCTGCAAAAAT
TTAGGCCTTTAAAAACAATTGTAGcattttttgatagtttttccNGCCGC
AAGTGCCTCTGCAAAAATTTAGGCCTTTAAAAACAATTGTAGCatttttt
ggtagtttttccttTTAGTTTTCTTAGATCTTTATTGTTACgttgttctc
attttttttaattgggccattccaataaatctccatacaggggggggggt
ggacgtATAGTATAGGTATGTGTGAATACCCtctgg
Run BLAST on NCBI

transcript from alignment at sc0000306:250672..255312+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018785 ID=TCONS_00018785|Name=TCONS_00018785|organism=Clytia hemisphaerica|type=transcript|length=4641bp|location=Sequence derived from alignment at sc0000306:250672..255312+ (Clytia hemisphaerica)
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCCCATCCATTGGTTGAACGTGTTTATT
ACCCAGGTTTGTAAAATTTATGCATTAAACATTTTTCTATTTCTGTAGAC
CAATCATTACAAGCGATTTTAACAAATAAGATGGAACGTTCCAGCAAAAA
GAACGATACTGAACGTTCTAAGATGTTCAGGTGCGTTAGAGGACGTCCTT
GAACGGATCCCCAAATTGACGCTTCTTCCTGGAGGAAACTAGTTTTCGCG
TTTTTTTGGTTTGAAGAAAAATCTAAACCTTCCAAATGTTAAAAGTTTTC
TCGATCTTATTCAGAAATTTAGCGAGTCAGAATAAAAAATTCTCCATCTA
GTACTAAATAAACTCTTGCACCGCAAAATAGGTTACGCGAAAAGaaattc
cgcgaaaataagttgtTCCCTTATTAGTATAACAAAATGAATACCTTGCC
TTTTCTTTAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACA
ATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGG
AAACCGCTTCCAATTTCATGAAAGCATTAAAGGTATGAAGAAAGGGTTAA
ATAATCTCCAATCTCCAAaagatttatttatgatttacgAATCATTCTCA
TTTTGTgctattttcaaagttttgagcTCCCCTAAAGGCCTATAATTTCA
CGAAATGATATTTTACTATGAGTCTATCAAAATTTTCTAGATACAGTTTG
GTTAGTAAATAGACTGATGAAACGCCATTGCGAACTTTCACTCGAtgaat
cttttgaaaatagtttccTTTAGGAAATCGTTTGACCTTTGGTTTACTTT
GATGGTATAAAATTTCGAAACTGCGAAATGTTATACCATTAAAGTATAAT
ACATAGGGAATTTTTCAATCCTCCCATTTTTACGTAACGATTGAAATCCT
CAAACATTTTCTAGTACAATTATATGGGTTTAGTGACTGTAGACCTTAAC
CTTTTAgacttttttcaatattttgttcaCCTATATTTCAGGTGTTCACT
TTGGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGTAAGT
AAAGTGTCAATTTCTCCCAAGAATCACCTATCTTTAATTTTCACTCTATT
ACGAAGACTAACTATGCTCCACTCCAATTATATCCCTGGCCTTTTTGTAA
CACTTAACAAAATACAATCTACGCGATACTTAGTAACTCTTAGTAAATTT
CGTGgttacacatttttttcaaaaggatacTAGCCAGTTTTGGCTGAAGA
ATAGCTGTTCTTTTTTTTCGTAATTTCTAGGCTTAaaggttcttaaaatg
tttttaaaatgtttttaataagcTTACTTTATTAATTTATTGAGACTTGA
AAAAGCTTTCTTAGCCATTGCTAAATCTTTGTTCTTCGAATTTGAGCCTc
atgatgttcttataaaatcgtACCCAtagaattgtttttataaaatagcg
TGTAATTACAGGTATCTATATAATAATAGCCGTACGTGTCTGAATCCCTT
TTTGCAGCGCTTTTGTTTTCGATAGCGGTTTTAGCTTGGGACGTCACAAA
ATTAATtgcaaaatagagaaaaaaacagGATTACTCCAAACACATTTCGT
CAGTCATCATGTACATTCTACGATAAAAGATAATTAGCAACGGATTTGAA
GGCCCTAAATGTGAAACTGATAATTTTGCATCGAAGGATAAAGTCAACTT
CACACCTGAGATGGCTATTTTTATAATGACAAAGTCGNAACTGATAATTT
TGCATCGAAGGATAAAGTTAACTTCACACCTGAGATGGCTATTTTTATAG
TGACAAAGTCTTCTTTGACGACGTCTGGGACCGCTATTTAACAAAATGAG
TTGATTTTTCTTCTAGCGCTATTATGACCCACGCTTCAGTTCCAGAAGAT
CAACGAACAAAACTCGGAATTACTGATACTTTCGTATGTtaatttttcca
tttcttttatttaaaatatctCACTCTAAAGGAGCTAAGATTTTTTGGGT
TAGATTTCCTTGTTATTCATTGCAAGGTCACACGTTTTTAACTTTCTGTT
CATACTGCAGTATaattttattcattcgttttCAAGAAATATAAATCAGA
TTTTCATGACTTTTATGGTAAATTCCGTTGAAAAGGAACTTAAAGGTTTG
TATAGTTTAAACACAACCTTGTCACCGTGTAtgccaggctttatttacgt
tactgattgacgtcTGGCGCTAAcagtaagcataaaaagctgataatacg
cagggaaatGAGGTTGGTTTAAACATAGATGTTGTTAAAATTTTGACGCa
aatttattcattttcttCTAGTTGAGAATGTCAGTTGGGCTAGAGGAAGC
AGAAGACCTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCCAACGTAA
GTGTTTCGTCtctttaattgttctctttaggTTATTCTCTCAGTTAAGGC
CATGTTTACACGTCACATGTAAGCGTTATTTCGTCTCACACGCTACTTTC
CGCCTCGCTCTGAAACGAAATGAAGTTATTTTATTGGTTGAATTCAATTG
TTTCGttacttctaaccaatagagcGGCTTTATTTCGTTTCTGAGTGGAA
CGAAACCGTTGTCTGCCAACATGGTCTAATTAACTTCAAGTCACTATACG
AATACGAATACGTCAGTGTTCGGTACAATTGACGCTttctaatttgattt
tcaaggaGAGTTGGACTTTCATCGAAAAATGtaagcgtcgtttatgagag
tttcttgttggcGATATTTCGCCAGTTAATTTTTATAAACTATATGAGCA
CACGCGGGCGACCTCCGTGATATACACTATGCAAAAATTCTACTTACACC
CCCCCCCAATACATTGAACGTATGTAATGTAGCAATACATTGAACGTATG
TAGACGCAAATCAAGTTATAAGCTATCAAGTTAGAACAGAAGAGGAAAAC
CATACGATTCTTGCTTATTTACTCATTCATTGACTCGTTCATtcatccat
tcattcattcatccattCAGTCTGAAGATCCCCCAAGCAAACGACAAAAG
ATTGCATAAACAAAACACGTACACACACTTATAATAAACAGGTACTCTCC
CTCCCACCCTGACTTTTACTCCCTCCCCCACCCTGACTTTTACTACCTCT
CCCACCCTAACTTTTACTCCCTCTCCCACCCTGACTTTACTCCCTCTCCC
ACCCTGACTTTTACTACCTCTCCCACCCTAACTTTACTCCCTCTCCCACC
CTGACTTTTACTCCTTTCCAGTAGGTCacagaaaaatgagaaaatgagaa
aaatatacATGAGAGAGATATACATTTTTTGTCATTTCCAGTCAATGTTG
AagccaatttcaaaaaaaggcCTAATCTTTTTTTACGTAAACATGAATTT
GAGGATTCTcttaaaaaaagattgaaaactcGAAGAGCTGTTACAATCTG
CTCTCTTCTTTCGCAGAGGGGGGACTGAAAAAATATGTCGTAgtttaatt
gttttcttttttttcttatcaTTCTCAGAATTAATTTTGGGTGACGGTAT
GTAATTTTTTTGGTGTTGACGAAAAAAATGACtgaattttatttataaaa
tggACATgtctaattttattttttagaaaaagaaaaatctattttatttt
gttatttatatCAGCAATTaaaattcaaccaaaaatattttaggtatttt
tcagttgatgatttgttttttatgaaagtaagtttgaaaaattcgGTTTC
AggtttatgttttaaaatttgcTTTTTGAGGAACATCTTTTATTATTGAA
GGATTATTTTccctgttttttttatttctaaattcTCTTTTTCAATTTAG
AAACCTTTCGCACTTAAGAACCATGATACTAATTTTTAGGGATTtctaga
tttttaaaagaatagtaaaattgataaaaaattgaaagataaaGATCTAA
TAGTGACattgcaaaaatttttcttttttctgtttgAAACCATCcccatt
taaattttttttctgtttttaggtttgagatattttaagCTTTTAGTCAC
CCAATACTCCAGTTTTTTACATAACAGCGAGGCTCAAAAACGCTGAGAAA
TGAGAACAGTTAAAGAACAAAGCTGAGCCTGGAATTTCTTAATTTCAAGT
GAgtcaaaaacgtaaaaatttgattgaaacCTAAATTGCCTCTATTTTGA
CCGAAAATAAAACAGTATTACGAGAATTTTGTGCCGCAAGTGCCTCTGCA
AAAATTTAGGCCTTTAAAAACAATTGTAGcattttttgatagtttttccN
GCCGCAAGTGCCTCTGCAAAAATTTAGGCCTTTAAAAACAATTGTAGCat
tttttggtagtttttccttTTAGTTTTCTTAGATCTTTATTGTTACgttg
ttctcattttttttaattgggccattccaataaatctccatacagggggg
ggggtggacgtATAGTATAGGTATGTGTGAATACCCtctgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010519XLOC_010519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018785-exon-sc0000306-1491911889:250672..250827TCONS_00018785-exon-sc0000306-1491911889:250672..250827Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1510915933:250672..250827TCONS_00018785-exon-sc0000306-1510915933:250672..250827Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1575043694:250672..250827TCONS_00018785-exon-sc0000306-1575043694:250672..250827Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1491911889:251232..251353TCONS_00018785-exon-sc0000306-1491911889:251232..251353Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1510915933:251232..251353TCONS_00018785-exon-sc0000306-1510915933:251232..251353Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1575043694:251232..251353TCONS_00018785-exon-sc0000306-1575043694:251232..251353Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1491911889:251813..251865TCONS_00018785-exon-sc0000306-1491911889:251813..251865Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1510915933:251813..251865TCONS_00018785-exon-sc0000306-1510915933:251813..251865Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1575043694:251813..251865TCONS_00018785-exon-sc0000306-1575043694:251813..251865Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1491911889:252688..252754TCONS_00018785-exon-sc0000306-1491911889:252688..252754Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1510915933:252688..252754TCONS_00018785-exon-sc0000306-1510915933:252688..252754Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1575043694:252688..252754TCONS_00018785-exon-sc0000306-1575043694:252688..252754Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1491911889:253143..253217TCONS_00018785-exon-sc0000306-1491911889:253143..253217Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1510915933:253143..253217TCONS_00018785-exon-sc0000306-1510915933:253143..253217Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1575043694:253143..253217TCONS_00018785-exon-sc0000306-1575043694:253143..253217Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1491911889:254350..255312TCONS_00018785-exon-sc0000306-1491911889:254350..255312Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1510915933:254350..255312TCONS_00018785-exon-sc0000306-1510915933:254350..255312Clytia hemisphaericaexon
TCONS_00018785-exon-sc0000306-1575043694:254350..255312TCONS_00018785-exon-sc0000306-1575043694:254350..255312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:250672..255312 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.045	8.93623	14.3814	14.4527	4.79045	4.5688	12.4292	18.0036	42.5512	21.7872	33.7783	44.4554	6.16735	8.93214	0	0.106356	3.24838	4.66394	0.168119	0	15.9882	18.1804	10.2795	7.03388	73.5251	147.304	9.26125	12.2544	2.81612	3.43878
Blast
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BLAST of TCONS_00018785 vs. Swiss-Prot (Human)
Match: CGL (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 7.107e-57
Identity = 104/155 (67.10%), Postives = 124/155 (80.00%), Query Frame = 3 
Query:    9 GVVPSPFDCYLANRGAKTLKVRMLQHQKNAMAVAKALEAHPLVERVYYPGLKSHPAHELVKRQCTGFSGMVSMVIKGNLETASNFMKALKVFTLAESLGGFESLIEHPAIMTHASVPEDQRTKLGITDTFLRMSVGLEEAEDLVADIEQALAAAN 473
            G VPSP DCYL NRG KTL VRM +H KN MAVA+ LE++P VE+V YPGL SHP HELVKRQCTG +GMV+  IKG L+ A  F+K LK+FTLAESLGGFESL E PAIMTHASV ++ R  LGI+DT +R+SVGLE+ EDL+ D++QAL AA+
Sbjct:  244 GAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 398
The following BLAST results are available for this feature:
BLAST of TCONS_00018785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CGL7.107e-5767.10Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P... [more]
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