TCONS_00018799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018799
Unique NameTCONS_00018799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018799 ID=TCONS_00018799|Name=TCONS_00018799|organism=Clytia hemisphaerica|type=transcript|length=247bp
CGTAGATCTTAAGGCGATCTAATGGCGATATAATGGTGATCTGTCATCAC
AGTGTAAAATTCATACACCATGATATTCACGGCAAGTTCTTCTAGTTACA
TTAAGATATAAAAGGTGTATTGTGGGAGATTAACAACCCTGTCTAACAGT
CCCAGtggaacattttcaaaaaggggGAATAAAAAGTTCTCTATCGAAAG
CCCGAcaaggatagaaattctattattctCAGCTAAATCCGTTGGGG
Run BLAST on NCBI

transcript from alignment at sc0000306:122883..123129

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018799 ID=TCONS_00018799|Name=TCONS_00018799|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at sc0000306:122883..123129 (Clytia hemisphaerica)
CCCCAACGGATTTAGCTGagaataatagaatttctatccttgTCGGGCTT
TCGATAGAGAACTTTTTATTCcccctttttgaaaatgttccaCTGGGACT
GTTAGACAGGGTTGTTAATCTCCCACAATACACCTTTTATATCTTAATGT
AACTAGAAGAACTTGCCGTGAATATCATGGTGTATGAATTTTACACTGTG
ATGACAGATCACCATTATATCGCCATTAGATCGCCTTAAGATCTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010528XLOC_010528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018799-exon-sc0000306-1491911889:122883..123129TCONS_00018799-exon-sc0000306-1491911889:122883..123129Clytia hemisphaericaexon
TCONS_00018799-exon-sc0000306-1510915933:122883..123129TCONS_00018799-exon-sc0000306-1510915933:122883..123129Clytia hemisphaericaexon
TCONS_00018799-exon-sc0000306-1575043694:122883..123129TCONS_00018799-exon-sc0000306-1575043694:122883..123129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:122883..123129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.44371	1.28289	1.78123	0.0455251	1.09009	11.6534	2.77594	4.52645	5.68137	1.23047	7.86172	5.8571	5.54394	2.25914	1.81213	1.13203	0.37466	1.72392	1.26629	1.07231	2.26703	0	0	6.0508	1.0165	0	1.17656	6.895	9.12103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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