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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018857 ID=TCONS_00018857|Name=TCONS_00018857|organism=Clytia hemisphaerica|type=transcript|length=1368bp
CTGTTGTTAATTTTTATTAGTCTTCTCTCGAATAGAAGTGGATGACCTCT
CCTAATTCTTGAAGCTTTAAAATACCGAATGCTGTCGGTTGCACTTCAAA
GAAATGGTCAATAATGTCCGTCTTGGAATTTCAATCCCATTTCAAATGGG
ACTTTGTCAATCTGGAGAAGAAAGCATCTCTCTACTTAAGAGACCGTATC
AAATCAATTGATAATGAATCTTTTCTCCAAAACCGAAACCTTCCTCAAAA
TTATACACTTTTGGGATTTATTTACTCTGAACTGTATCGGAGAGCCGAGG
ATGCTGGAGAAGACCTTCTTACAAATGCTGAAGACTGCTTTCAGCAAGCT
CTAAATGAATGTAGCGATGGGAACACTGGATATCTAGCAGTCATTTATGG
CAACTTAATTTATCTGAATGAAAAGCTCAAGAATAATGATGCTTCAAGCT
TTGTTAAAGAGTATAGAAAGCTTTCTCACCATATCAATCTGGAAAATAAT
GCAGAAGTTTTAGCAATGAAGGGTTTCACAGCTAGCTTCTTCCATGCACA
CGCCGAGTCTATAAACTTCTATCAAAAGGCTCTAACCATCACCAAGACAG
CAGAATGGGTTTTCGGCTTGGCGCTTGTGAAAATGCGTCGTATACGCGGA
AGAACAGATACGATAGCAGAACGAAAGGAGATTGAAATACTTTTGCGGCA
AGCTATGGATATGGACCCCTCCTACGACATGATCAAGTTGAAGCTGGCCA
GGCTTTTGACCGGTAAAAGGTATGAAAAAGAGGCACATGAGGAAGCCCGC
ACTCTTATTGATcaactcaaaatatgtaaaaataaagataaaataaaCTT
CATGGAAGAAATGGCTATCATGTTTAAAAACTTGGGTGAACAACAGAGGG
CCTTAAATATGTTAGAAAAATGCTACCGATTGAATCCAAAGTCACCTACC
ACATTGCGAAGACTTGGAAATATGTACTACGAAAAGTGGAAATTTACAAG
AGTTAATGATCATTTACAGAAAGCAATCAAATATTTCTCTGAAAATGTAA
GCCATGATTCTGAAAATGCCCTACCCTTTGATGTAATCAAGATAGGAAAA
GTTCATCTTGATGCAGTGGTATTTTATAGTTCACAAGAGAATGGCAACGA
GTCAGAAGTTCACGAGCAGAAGTGTAAAAAATGGTTCAAAATTGCAGAGG
AACGGCTTGTTAAAGAATGGTACGATCTGCGAAATGACACCGAGACttgt
ttcgaactttcgaaatttcataaatatttcaaaaatcttgagaaaGAAAA
GCAATATTTGAAGCAAACACTTTTAAAAGCAAACGAAGGAAGTGAGACTG
ATCATTTCCAAGAGTTAA Run BLAST on NCBI transcript from alignment at sc0000309:295726..297484- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018857 ID=TCONS_00018857|Name=TCONS_00018857|organism=Clytia hemisphaerica|type=transcript|length=1759bp|location=Sequence derived from alignment at sc0000309:295726..297484- (Clytia hemisphaerica)
CTGTTGTTAATTTTTATTAGTCTTCTCTCGAATAGAAGTGGATGACCTCT
CCTAATTCTTGAAGCTTTAAAATACCGAATGCTGTCGGTTGCACTTCAAA
GTAAGTATTCAGATTATATTCAAATTTTAAATAAATCTAAAAAATGACTG
ATCTTGGTTTGACAATATTGAATTAGCGGAACCAATACGTAGCTATATGG
CGCAGTACAGAATACAATATGGTATATATTTTTCGAGCTTTTTCAGATGT
TTAGCCATTTAGTAGAAATATGAAACTCTGAACGAGATATATTAATATAT
GCTATACGGTACCAGTAAAATTGTCAAAACTGGTTTGTCATCAACTTGAA
AAATATTACAATATTCTAACTCCATTTATGTTTTTTTTCTCTTCTTGTTT
TTGTTTCTTGTCGATGTTTTTGTTCTTCTTTATATATTATTTTAACATTT
ATCTTGAATTTTTGATGAAAATTATACTACCTTTATTCTAGGAAATGGTC
AATAATGTCCGTCTTGGAATTTCAATCCCATTTCAAATGGGACTTTGTCA
ATCTGGAGAAGAAAGCATCTCTCTACTTAAGAGACCGTATCAAATCAATT
GATAATGAATCTTTTCTCCAAAACCGAAACCTTCCTCAAAATTATACACT
TTTGGGATTTATTTACTCTGAACTGTATCGGAGAGCCGAGGATGCTGGAG
AAGACCTTCTTACAAATGCTGAAGACTGCTTTCAGCAAGCTCTAAATGAA
TGTAGCGATGGGAACACTGGATATCTAGCAGTCATTTATGGCAACTTAAT
TTATCTGAATGAAAAGCTCAAGAATAATGATGCTTCAAGCTTTGTTAAAG
AGTATAGAAAGCTTTCTCACCATATCAATCTGGAAAATAATGCAGAAGTT
TTAGCAATGAAGGGTTTCACAGCTAGCTTCTTCCATGCACACGCCGAGTC
TATAAACTTCTATCAAAAGGCTCTAACCATCACCAAGACAGCAGAATGGG
TTTTCGGCTTGGCGCTTGTGAAAATGCGTCGTATACGCGGAAGAACAGAT
ACGATAGCAGAACGAAAGGAGATTGAAATACTTTTGCGGCAAGCTATGGA
TATGGACCCCTCCTACGACATGATCAAGTTGAAGCTGGCCAGGCTTTTGA
CCGGTAAAAGGTATGAAAAAGAGGCACATGAGGAAGCCCGCACTCTTATT
GATCAACTCAAAATATGTAAAAATAAAGATAAAATAAACTTCATGGAAGA
AATGGCTATCATGTTTAAAAACTTGGGTGAACAACAGAGGGCCTTAAATA
TGTTAGAAAAATGCTACCGATTGAATCCAAAGTCACCTACCACATTGCGA
AGACTTGGAAATATGTACTACGAAAAGTGGAAATTTACAAGAGTTAATGA
TCATTTACAGAAAGCAATCAAATATTTCTCTGAAAATGTAAGCCATGATT
CTGAAAATGCCCTACCCTTTGATGTAATCAAGATAGGAAAAGTTCATCTT
GATGCAGTGGTATTTTATAGTTCACAAGAGAATGGCAACGAGTCAGAAGT
TCACGAGCAGAAGTGTAAAAAATGGTTCAAAATTGCAGAGGAACGGCTTG
TTAAAGAATGGTACGATCTGCGAAATGACACCGAGACTTGTTTCGAACTT
TCGAAATTTCATAAATATTTCAAAAATCTTGAGAAAGAAAAGCAATATTT
GAAGCAAACACTTTTAAAAGCAAACGAAGGAAGTGAGACTGATCATTTCC
AAGAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018857-exon-sc0000309-1575043694:297385..297484 | TCONS_00018857-exon-sc0000309-1575043694:297385..297484 | Clytia hemisphaerica | exon |
| TCONS_00018857-exon-sc0000309-1575043694:295726..296993 | TCONS_00018857-exon-sc0000309-1575043694:295726..296993 | Clytia hemisphaerica | exon |
| TCONS_00018857-exon-sc0000309-1510915933:297385..297484 | TCONS_00018857-exon-sc0000309-1510915933:297385..297484 | Clytia hemisphaerica | exon |
| TCONS_00018857-exon-sc0000309-1510915933:295726..296993 | TCONS_00018857-exon-sc0000309-1510915933:295726..296993 | Clytia hemisphaerica | exon |
| TCONS_00018857-exon-sc0000309-1491911889:297385..297484 | TCONS_00018857-exon-sc0000309-1491911889:297385..297484 | Clytia hemisphaerica | exon |
| TCONS_00018857-exon-sc0000309-1491911889:295726..296993 | TCONS_00018857-exon-sc0000309-1491911889:295726..296993 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:295726..297484 - |
Blast
The following BLAST results are available for this feature:
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