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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018871 ID=TCONS_00018871|Name=TCONS_00018871|organism=Clytia hemisphaerica|type=transcript|length=1455bp
tcaacgaatttaggtgggccaaagaaatcataaatcactgattttctttt
atttgttaaaaactaaattgttgcgttttaataacctttctcttgttctt
ctatggcctagtgtctgcaaataagtactttagaccccaattttgtattt
ttgacaccccgggatggcctaatttcaaaattggagctccgaaattaaaa
gtttctaaaaggcggacacttctaattagcggacactaaccctttccccg
atggtgtccgctaattagaggttccactgtacaATATTTCTCAAAGCAAA
TAGATCCAAGTGATCTCACCAGTTAGGCTTCTAAGAATTCAACATTATTG
TAAAAGTAAAAGGGAATCGATGCTACAACTGCGACACAGCATGATCTATT
GTGATGACGTAGGGTGAAATGTTTTCTTTGGTGGTTTTGATGCTCTCACG
CCTTGATGAAAAAgaagtttctttgaaaatgaatcGCAATCTACTCATCA
TAATCatggaaaaattgaaaatcttgttGCGTAGAATGTAAACAAGGGGG
TCAAAAACCATCCGAAGTAAGAGAAGCATGTACATAGACATTACAGTAGT
ATTACCATCTCTGTGAGTGATGCCAGCTCCTTTGTGGACAATCATCCAGA
TAACTGGTGGAACAGTACATAAGAAGTAAGAGATAACAATGCTCAAACAC
ATAATTGTTGTTTTCACTTGCATTTTACTTCTCTCTCGTGTAAAAAATGG
TGCAGATTTGTTGCTACCTTTACGCTGTTTAGGAGTGGATGGTGCGAATC
CGTGTTTGATGGTTTTCTTCATCACCATAAAGATGTAAAGATAGGAAAGG
ATGAGAAAAATGTTCGAAAACACCATTACTCCGCATAATGTCNGATGGTT
TTCTTCATCACTATAAAGATGTAAAGATAGGAAAGGATGAGAAAAATGTT
CGAAAACACCATTACTCCGCATAATGTCAAAAAATAGATACTTCGTCTGT
GGTGCAGTTGAATGGTAGGTAATACGGACAAAGACCAGCAGAAGAACAGC
AACATGATAAGATATCGACGTCTCAAGTCTCTATGAAAGAAAGGGTATCG
AAAGGAGACAAGTCTTTCGAAAGCAAAGATAATAACATTGGTCAAAGAAA
CCAGTAACGCGAACGCAATGCCGTATCCTGTGATCTGATAAATCGTAACT
GGCAGTGTCCCTCCTTTATCGATAACCATAATGGCGCAATCAACGGATGT
CAGAAAGCTGTTCATCAGATTTGACATGCATAAGCTCAATAAGataattt
catcaaatttgaacTTCTTGTCGGGCGCCTGTTTTCGCCTACGGAGAGTG
ATGTAGTAAAGCGCTATAGTGTTGCAAATTGCCCCAACTATTGCTAGAAT
CCACGATGTATAAAAtaaagatttgtaaaaaatgtcATTTGAAATCATAT
TTTCC Run BLAST on NCBI protein sequence of TCONS_00018871-protein >TCONS_00018871-protein ID=TCONS_00018871-protein|Name=TCONS_00018871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MRSNGVFEHFSHPFLSLHLYSDEENHXTLCGVMVFSNIFLILSYLYIFMV
MKKTIKHGFAPSTPKQRKGSNKSAPFFTRERSKMQVKTTIMCLSIVISYF
LCTVPPVIWMIVHKGAGITHRDGNTTVMSMYMLLLLRMVFDPLVYILRNK
IFNFSMIMMSRLRFIFKETSFSSRRESIKTTKENISPYVITIDHAVSQL Run BLAST on NCBI transcript from alignment at sc0000309:170421..171875 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018871 ID=TCONS_00018871|Name=TCONS_00018871|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at sc0000309:170421..171875 (Clytia hemisphaerica)
GGAAAATATGATTTCAAATgacattttttacaaatctttaTTTTATACAT
CGTGGATTCTAGCAATAGTTGGGGCAATTTGCAACACTATAGCGCTTTAC
TACATCACTCTCCGTAGGCGAAAACAGGCGCCCGACAAGAAgttcaaatt
tgatgaaattatCTTATTGAGCTTATGCATGTCAAATCTGATGAACAGCT
TTCTGACATCCGTTGATTGCGCCATTATGGTTATCGATAAAGGAGGGACA
CTGCCAGTTACGATTTATCAGATCACAGGATACGGCATTGCGTTCGCGTT
ACTGGTTTCTTTGACCAATGTTATTATCTTTGCTTTCGAAAGACTTGTCT
CCTTTCGATACCCTTTCTTTCATAGAGACTTGAGACGTCGATATCTTATC
ATGTTGCTGTTCTTCTGCTGGTCTTTGTCCGTATTACCTACCATTCAACT
GCACCACAGACGAAGTATCTATTTTTTGACATTATGCGGAGTAATGGTGT
TTTCGAACATTTTTCTCATCCTTTCCTATCTTTACATCTTTATAGTGATG
AAGAAAACCATCNGACATTATGCGGAGTAATGGTGTTTTCGAACATTTTT
CTCATCCTTTCCTATCTTTACATCTTTATGGTGATGAAGAAAACCATCAA
ACACGGATTCGCACCATCCACTCCTAAACAGCGTAAAGGTAGCAACAAAT
CTGCACCATTTTTTACACGAGAGAGAAGTAAAATGCAAGTGAAAACAACA
ATTATGTGTTTGAGCATTGTTATCTCTTACTTCTTATGTACTGTTCCACC
AGTTATCTGGATGATTGTCCACAAAGGAGCTGGCATCACTCACAGAGATG
GTAATACTACTGTAATGTCTATGTACATGCTTCTCTTACTTCGGATGGTT
TTTGACCCCCTTGTTTACATTCTACGCaacaagattttcaatttttccat
GATTATGATGAGTAGATTGCgattcattttcaaagaaacttcTTTTTCAT
CAAGGCGTGAGAGCATCAAAACCACCAAAGAAAACATTTCACCCTACGTC
ATCACAATAGATCATGCTGTGTCGCAGTTGTAGCATCGATTCCCTTTTAC
TTTTACAATAATGTTGAATTCTTAGAAGCCTAACTGGTGAGATCACTTGG
ATCTATTTGCTTTGAGAAATATtgtacagtggaacctctaattagcggac
accatcggggaaagggttagtgtccgctaattagaagtgtccgcctttta
gaaacttttaatttcggagctccaattttgaaattaggccatcccggggt
gtcaaaaatacaaaattggggtctaaagtacttatttgcagacactaggc
catagaagaacaagagaaaggttattaaaacgcaacaatttagtttttaa
caaataaaagaaaatcagtgatttatgatttctttggcccacctaaattc
gttga Coding sequence (CDS) from alignment at sc0000309:170421..171875 >TCONS_00018871 ID=TCONS_00018871|Name=TCONS_00018871|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000309:170421..171875 (Clytia hemisphaerica)
ATGCGGAGTAATGGTGTTTTCGAACATTTTTCTCATCCTTTCCTATCTTT
ACATCTTTATAGTGATGAAGAAAACCATCNGACATTATGCGGAGTAATGG
TGTTTTCGAACATTTTTCTCATCCTTTCCTATCTTTACATCTTTATGGTG
ATGAAGAAAACCATCAAACACGGATTCGCACCATCCACTCCTAAACAGCG
TAAAGGTAGCAACAAATCTGCACCATTTTTTACACGAGAGAGAAGTAAAA
TGCAAGTGAAAACAACAATTATGTGTTTGAGCATTGTTATCTCTTACTTC
TTATGTACTGTTCCACCAGTTATCTGGATGATTGTCCACAAAGGAGCTGG
CATCACTCACAGAGATGGTAATACTACTGTAATGTCTATGTACATGCTTC
TCTTACTTCGGATGGTTTTTGACCCCCTTGTTTACATTCTACGCaacaag
attttcaatttttccatGATTATGATGAGTAGATTGCgattcattttcaa
agaaacttcTTTTTCATCAAGGCGTGAGAGCATCAAAACCACCAAAGAAA
ACATTTCACCCTACGTCATCACAATAGATCATGCTGTGTCGCAGTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018871-exon-sc0000309-1491911889:170421..171875 | TCONS_00018871-exon-sc0000309-1491911889:170421..171875 | Clytia hemisphaerica | exon |
| TCONS_00018871-exon-sc0000309-1510915933:170421..171875 | TCONS_00018871-exon-sc0000309-1510915933:170421..171875 | Clytia hemisphaerica | exon |
| TCONS_00018871-exon-sc0000309-1575043694:170421..171875 | TCONS_00018871-exon-sc0000309-1575043694:170421..171875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:170421..171875 . |
Blast
The following BLAST results are available for this feature:
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