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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018876 ID=TCONS_00018876|Name=TCONS_00018876|organism=Clytia hemisphaerica|type=transcript|length=2142bp
GCAATCCTTCATCTAGAGAAGCAAATCCTACTTCTGGGCGATGAAGTATC
TGGTGATTTACTTGAAAAAGAAGCTTCTTTAAAGTGGAAGTTTCTATTGT
CACGAATCAAAGACAAGCAAGATTCAGAAGATCGGAATTTCGTCCTCCAA
GTTAATTTGCGAAACTTGtatcaaaaagttgaaaaattacatgATTGCGC
TGTCAAAtgggatttggaaaattatgTGAGAAGAatggaaatggaaattt
tattgcCTGGTTCAGAGCTCAACGAATTAAAGGAAGCGGTAATTCATTTT
GGTGAAAGTTTACTTAAGTACCGAACGGGAAAAGCTggattcgaccaatc
aaataGTTCTATTTTTCGCGTTCTTCACGAGGGTAAAATCATCTTGGACC
ATTCAGTGATGTAtattaaagaaaaactttattcaCAAGATGGTAAAGCC
AATTTTAATTACCCTCGAGCAGTTGCAATgcaaaataaagatgaagatgg
GAGGAAAGATCAGCTGGAAAAATACTACACCACAAACCGGTGGAAAGATT
TCTCTCAAAGGTGTCCTGGAATCGCCCTTTTCCTATTAGACCGTCTCGAT
GTCACCAAGTATGATTTTCTTATTGGTTTTTTTGAAGTTCGTAATGCAGC
TTCACATAAACTTAAATCGATACaggttgaaaaattgaataaatattttc
ctTCTATAATGGAAAAGGTAGATTTGGTGTATAAAGTTTCTCACTATGTA
GCAGAGGTGTTGAAATTTATCACGAAAGAAGTTGACAGACTCTATTGAAG
GAACTTCAAAAACAGGAGAAACCCTGAATATCATGAACATAAAAAATGAC
TTAGCACATATGAGATCAtgcaaaaattaaaagattacGAGGCAAATAGA
AGTTGTTACCAGTTTTATGTAAAAAACTATTTGTAGTAAAGTAACGTTAG
AGGAGACCGGCATTTCAAGACACTTCTATATACTCAAGATTAACACCCTT
TTTTCATTAATTGAAATAGTGTTATATTGTAAAGTAATTGCACTTTTTTA
GTAAAATTATTAACAATCGNCAGAAGATCGGGATTTCGTCCTCCAAGTTA
ATTTGCGAAACTTGTAtcagaaagttgaaaaattacatgATTGCGCTGTC
AAATGGGATTTGGAAAATAATATGAGAAAAAcggaaatggaaattttatt
gaCTGGTTCAGAGCTCAACGAATTAAAGAAAACGGTAATGCATTTTGGTG
AAAGTTTACTTAAGTACCGAACGGGAAAAGCTggattcgaccaatcaaat
aGTTCTATTTTTCGCGTGCTTCACGAGGGTAAAATCATCTTAGACCATTC
AGTGATGTAtattaaagaaaaactttattcaGAAGATGGTAAAGCCAATT
TTAATTATCCTCGAGCAGTTGAAATgcaaaataaagatgaagatggGAGG
AAAGATCAGCTGGAAAAATACTACACCACAAACCGGTggaaaaatttctc
tcaaaggTGTCCTGGAATCGCCCTTTTCCTATTAGACCGTCTCGATGTCA
CCAAGTATGATTTTCTTATTGGTTTTTTTAACGTTCGTAATGCAGCTTCA
CATAAACTTAAATCGATACAGGTTGAAAAATTGACTGACTATTTTCCTTC
TATCAAGGAAAAGGTCGATTTGGTGTATAAAGTTTCTCACTATGTAGCAG
ACGTGTTGAAATTTATCACGAAAGAAGTTGACCAGACTCTATTGAAGGAA
CTTCAAAAACAGGAGAAACCCTGAATATCATGAACATAAAAAATGACTTA
GCACATATGAGATCAtgcaaaaattaaaagattacGAGGCAAATAGAAGT
TGTTACCAGTTTTATGTAAAAAACTATTTGTAGTAAAGTAACGTTAGAGG
AGACCGGCATTTCAAGACACTTCTATATACTCAAGATTAACACCCTTTTT
TCATTAATTGAAATATTGTTATATTGTAAAGTAATTGCACTTTTTTAGTA
AAATTATTAACAATCGATTTAGCCCATAGATGACAtttaaacttcaaaag
aaattgaaattagagCATAGTCTATGATATTTAATAGATGTGTCAGTAAC
ATCTTCAAAATCATTTCAACATGACTTTCGACTTAAATTTAG Run BLAST on NCBI protein sequence of TCONS_00018876-protein >TCONS_00018876-protein ID=TCONS_00018876-protein|Name=TCONS_00018876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
AILHLEKQILLLGDEVSGDLLEKEASLKWKFLLSRIKDKQDSEDRNFVLQ
VNLRNLYQKVEKLHDCAVKWDLENYVRRMEMEILLPGSELNELKEAVIHF
GESLLKYRTGKAGFDQSNSSIFRVLHEGKIILDHSVMYIKEKLYSQDGKA
NFNYPRAVAMQNKDEDGRKDQLEKYYTTNRWKDFSQRCPGIALFLLDRLD
VTKYDFLIGFFEVRNAASHKLKSIQVEKLNKYFPSIMEKVDLVYKVSHYV
AEVLKFITKEVDRLY Run BLAST on NCBI transcript from alignment at sc0000309:293480..295621 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018876 ID=TCONS_00018876|Name=TCONS_00018876|organism=Clytia hemisphaerica|type=transcript|length=2142bp|location=Sequence derived from alignment at sc0000309:293480..295621 (Clytia hemisphaerica)
CTAAATTTAAGTCGAAAGTCATGTTGAAATGATTTTGAAGATGTTACTGA
CACATCTATTAAATATCATAGACTATGctctaatttcaatttcttttgaa
gtttaaaTGTCATCTATGGGCTAAATCGATTGTTAATAATTTTACTAAAA
AAGTGCAATTACTTTACAATATAACAATATTTCAATTAATGAAAAAAGGG
TGTTAATCTTGAGTATATAGAAGTGTCTTGAAATGCCGGTCTCCTCTAAC
GTTACTTTACTACAAATAGTTTTTTACATAAAACTGGTAACAACTTCTAT
TTGCCTCgtaatcttttaatttttgcaTGATCTCATATGTGCTAAGTCAT
TTTTTATGTTCATGATATTCAGGGTTTCTCCTGTTTTTGAAGTTCCTTCA
ATAGAGTCTGGTCAACTTCTTTCGTGATAAATTTCAACACGTCTGCTACA
TAGTGAGAAACTTTATACACCAAATCGACCTTTTCCTTGATAGAAGGAAA
ATAGTCAGTCAATTTTTCAACCTGTATCGATTTAAGTTTATGTGAAGCTG
CATTACGAACGTTAAAAAAACCAATAAGAAAATCATACTTGGTGACATCG
AGACGGTCTAATAGGAAAAGGGCGATTCCAGGACAcctttgagagaaatt
tttccACCGGTTTGTGGTGTAGTATTTTTCCAGCTGATCTTTCCTCccat
cttcatctttattttgcATTTCAACTGCTCGAGGATAATTAAAATTGGCT
TTACCATCTTCtgaataaagtttttctttaataTACATCACTGAATGGTC
TAAGATGATTTTACCCTCGTGAAGCACGCGAAAAATAGAACtatttgatt
ggtcgaatccAGCTTTTCCCGTTCGGTACTTAAGTAAACTTTCACCAAAA
TGCATTACCGTTTTCTTTAATTCGTTGAGCTCTGAACCAGtcaataaaat
ttccatttccgTTTTTCTCATATTATTTTCCAAATCCCATTTGACAGCGC
AATcatgtaatttttcaactttctgaTACAAGTTTCGCAAATTAACTTGG
AGGACGAAATCCCGATCTTCTGNCGATTGTTAATAATTTTACTAAAAAAG
TGCAATTACTTTACAATATAACACTATTTCAATTAATGAAAAAAGGGTGT
TAATCTTGAGTATATAGAAGTGTCTTGAAATGCCGGTCTCCTCTAACGTT
ACTTTACTACAAATAGTTTTTTACATAAAACTGGTAACAACTTCTATTTG
CCTCgtaatcttttaatttttgcaTGATCTCATATGTGCTAAGTCATTTT
TTATGTTCATGATATTCAGGGTTTCTCCTGTTTTTGAAGTTCCTTCAATA
GAGTCTGTCAACTTCTTTCGTGATAAATTTCAACACCTCTGCTACATAGT
GAGAAACTTTATACACCAAATCTACCTTTTCCATTATAGAaggaaaatat
ttattcaatttttcaacctGTATCGATTTAAGTTTATGTGAAGCTGCATT
ACGAACTTCAAAAAAACCAATAAGAAAATCATACTTGGTGACATCGAGAC
GGTCTAATAGGAAAAGGGCGATTCCAGGACACCTTTGAGAGAAATCTTTC
CACCGGTTTGTGGTGTAGTATTTTTCCAGCTGATCTTTCCTCccatcttc
atctttattttgcATTGCAACTGCTCGAGGGTAATTAAAATTGGCTTTAC
CATCTTGtgaataaagtttttctttaataTACATCACTGAATGGTCCAAG
ATGATTTTACCCTCGTGAAGAACGCGAAAAATAGAACtatttgattggtc
gaatccAGCTTTTCCCGTTCGGTACTTAAGTAAACTTTCACCAAAATGAA
TTACCGCTTCCTTTAATTCGTTGAGCTCTGAACCAGgcaataaaatttcc
atttccatTCTTCTCAcataattttccaaatcccaTTTGACAGCGCAATc
atgtaatttttcaactttttgataCAAGTTTCGCAAATTAACTTGGAGGA
CGAAATTCCGATCTTCTGAATCTTGCTTGTCTTTGATTCGTGACAATAGA
AACTTCCACTTTAAAGAAGCTTCTTTTTCAAGTAAATCACCAGATACTTC
ATCGCCCAGAAGTAGGATTTGCTTCTCTAGATGAAGGATTGC Coding sequence (CDS) from alignment at sc0000309:293480..295621 >TCONS_00018876 ID=TCONS_00018876|Name=TCONS_00018876|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0000309:293480..295621 (Clytia hemisphaerica)
TCAATAGAGTCTGTCAACTTCTTTCGTGATAAATTTCAACACCTCTGCTA
CATAGTGAGAAACTTTATACACCAAATCTACCTTTTCCATTATAGAagga
aaatatttattcaatttttcaacctGTATCGATTTAAGTTTATGTGAAGC
TGCATTACGAACTTCAAAAAAACCAATAAGAAAATCATACTTGGTGACAT
CGAGACGGTCTAATAGGAAAAGGGCGATTCCAGGACACCTTTGAGAGAAA
TCTTTCCACCGGTTTGTGGTGTAGTATTTTTCCAGCTGATCTTTCCTCcc
atcttcatctttattttgcATTGCAACTGCTCGAGGGTAATTAAAATTGG
CTTTACCATCTTGtgaataaagtttttctttaataTACATCACTGAATGG
TCCAAGATGATTTTACCCTCGTGAAGAACGCGAAAAATAGAACtatttga
ttggtcgaatccAGCTTTTCCCGTTCGGTACTTAAGTAAACTTTCACCAA
AATGAATTACCGCTTCCTTTAATTCGTTGAGCTCTGAACCAGgcaataaa
atttccatttccatTCTTCTCAcataattttccaaatcccaTTTGACAGC
GCAATcatgtaatttttcaactttttgataCAAGTTTCGCAAATTAACTT
GGAGGACGAAATTCCGATCTTCTGAATCTTGCTTGTCTTTGATTCGTGAC
AATAGAAACTTCCACTTTAAAGAAGCTTCTTTTTCAAGTAAATCACCAGA
TACTTCATCGCCCAGAAGTAGGATTTGCTTCTCTAGATGAAGGATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018876-exon-sc0000309-1491911889:293480..295621 | TCONS_00018876-exon-sc0000309-1491911889:293480..295621 | Clytia hemisphaerica | exon |
| TCONS_00018876-exon-sc0000309-1510915933:293480..295621 | TCONS_00018876-exon-sc0000309-1510915933:293480..295621 | Clytia hemisphaerica | exon |
| TCONS_00018876-exon-sc0000309-1575043694:293480..295621 | TCONS_00018876-exon-sc0000309-1575043694:293480..295621 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:293480..295621 . |
Blast
The following BLAST results are available for this feature:
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