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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018877 ID=TCONS_00018877|Name=TCONS_00018877|organism=Clytia hemisphaerica|type=transcript|length=1418bp
GCAATCCTTCATCTAGAGAAGCAAATCCTACTTCTGGGCGATGAAGTATC
TGGTGATTTACTTGAAAAAGAAGCTTCTTTAAAGTGGAAGTTTCTATTGT
CACGAATCAAAGACAAGCAAGATTCAGAAGATCGGAATTTCGTCCTCCAA
GTTAATTTGCGAAACTTGtatcaaaaagttgaaaaattacatgATTGCGC
TGTCAAAtgggatttggaaaattatgTGAGAAGAatggaaatggaaattt
tattgcCTGGTTCAGAGCTCAACGAATTAAAGGAAGCGGTAATTCATTTT
GGTGAAAGTTTACTTAAGTACCGAACGGGAAAAGCTggattcgaccaatc
aaataGTTCTATTTTTCGCGTTCTTCACGAGGGTAAAATCATCTTGGACC
ATTCAGTGATGTAtattaaagaaaaactttattcaCAAGATGGTAAAGCC
AATTTTAATTACCCTCGAGCAGTTGCAATgcaaaataaagatgaagatgg
GAGGAAAGATCAGCTGGAAAAATACTACACCACAAACCGGTGGAAAGATT
TCTCTCAAAGGTGTCCTGGAATCGCCCTTTTCCTATTAGACCGTCTCGAT
GTCACCAAGTATGATTTTCTTATTGGTTTTTTTGAAGTTCGTAATGCAGC
TTCACATAAACTTAAATCGATACaggttgaaaaattgaataaatattttc
ctTCTATAATGGAAAAGGTAGATTTGGTGTATAAAGTTTCTCACTATGTA
GCAGAGGTGTTGAAATTTATCACGAAAGAAGTTGACAGACTCTATTGAAG
GAACTTCAAAAACAGGAGAAACCCTGAATATCATGAACATAAAAAATGAC
TTAGCACATATGAGATCAtgcaaaaattaaaagattacGAGGCAAATAGA
AGTTGTTACCAGTTTTATGTAAAAAACTATTTGTAGTAAAGTAACGTTAG
AGGAGACCGGCATTTCAAGACACTTCTATATACTCAAGATTAACACCCTT
TTTTCATTAATTGAAATAGTGTTATATTGTAAAGTAATTGCACTTTTTTA
GTAAAATTATTAACAATCGNCAGAAGATCGGGATTTCGTCCTCCAAGTTA
ATTTGCGAAACTTGTAtcagaaagttgaaaaattacatgATTGCGCTGTC
AAATGGGATTTGGAAAATAATATGAGAAAAAcggaaatggaaattttatt
gaCTGGTTCAGAGCTCAACGAATTAAAGAAAACGGTAATGCATTTTGGTG
AAAGTTTACTTAAGTACCGAACGGGAAAAGCTggattcgaccaatcaaat
aGTTCTATTTTTCGCGTGCTTCACGAGGGTAAAATCATCTTAGACCATTC
AGTGATGTAtattaaagaaaaactttattcaGAAGATGGTAAAGCCAATT
TTAATTATCCTCGAGCAG Run BLAST on NCBI transcript from alignment at sc0000309:294204..295621 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018877 ID=TCONS_00018877|Name=TCONS_00018877|organism=Clytia hemisphaerica|type=transcript|length=1418bp|location=Sequence derived from alignment at sc0000309:294204..295621 (Clytia hemisphaerica)
CTGCTCGAGGATAATTAAAATTGGCTTTACCATCTTCtgaataaagtttt
tctttaataTACATCACTGAATGGTCTAAGATGATTTTACCCTCGTGAAG
CACGCGAAAAATAGAACtatttgattggtcgaatccAGCTTTTCCCGTTC
GGTACTTAAGTAAACTTTCACCAAAATGCATTACCGTTTTCTTTAATTCG
TTGAGCTCTGAACCAGtcaataaaatttccatttccgTTTTTCTCATATT
ATTTTCCAAATCCCATTTGACAGCGCAATcatgtaatttttcaactttct
gaTACAAGTTTCGCAAATTAACTTGGAGGACGAAATCCCGATCTTCTGNC
GATTGTTAATAATTTTACTAAAAAAGTGCAATTACTTTACAATATAACAC
TATTTCAATTAATGAAAAAAGGGTGTTAATCTTGAGTATATAGAAGTGTC
TTGAAATGCCGGTCTCCTCTAACGTTACTTTACTACAAATAGTTTTTTAC
ATAAAACTGGTAACAACTTCTATTTGCCTCgtaatcttttaatttttgca
TGATCTCATATGTGCTAAGTCATTTTTTATGTTCATGATATTCAGGGTTT
CTCCTGTTTTTGAAGTTCCTTCAATAGAGTCTGTCAACTTCTTTCGTGAT
AAATTTCAACACCTCTGCTACATAGTGAGAAACTTTATACACCAAATCTA
CCTTTTCCATTATAGAaggaaaatatttattcaatttttcaacctGTATC
GATTTAAGTTTATGTGAAGCTGCATTACGAACTTCAAAAAAACCAATAAG
AAAATCATACTTGGTGACATCGAGACGGTCTAATAGGAAAAGGGCGATTC
CAGGACACCTTTGAGAGAAATCTTTCCACCGGTTTGTGGTGTAGTATTTT
TCCAGCTGATCTTTCCTCccatcttcatctttattttgcATTGCAACTGC
TCGAGGGTAATTAAAATTGGCTTTACCATCTTGtgaataaagtttttctt
taataTACATCACTGAATGGTCCAAGATGATTTTACCCTCGTGAAGAACG
CGAAAAATAGAACtatttgattggtcgaatccAGCTTTTCCCGTTCGGTA
CTTAAGTAAACTTTCACCAAAATGAATTACCGCTTCCTTTAATTCGTTGA
GCTCTGAACCAGgcaataaaatttccatttccatTCTTCTCAcataattt
tccaaatcccaTTTGACAGCGCAATcatgtaatttttcaactttttgata
CAAGTTTCGCAAATTAACTTGGAGGACGAAATTCCGATCTTCTGAATCTT
GCTTGTCTTTGATTCGTGACAATAGAAACTTCCACTTTAAAGAAGCTTCT
TTTTCAAGTAAATCACCAGATACTTCATCGCCCAGAAGTAGGATTTGCTT
CTCTAGATGAAGGATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018877-exon-sc0000309-1491911889:294204..295621 | TCONS_00018877-exon-sc0000309-1491911889:294204..295621 | Clytia hemisphaerica | exon |
| TCONS_00018877-exon-sc0000309-1510915933:294204..295621 | TCONS_00018877-exon-sc0000309-1510915933:294204..295621 | Clytia hemisphaerica | exon |
| TCONS_00018877-exon-sc0000309-1575043694:294204..295621 | TCONS_00018877-exon-sc0000309-1575043694:294204..295621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:294204..295621 . |
Blast
The following BLAST results are available for this feature:
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