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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018887 ID=TCONS_00018887|Name=TCONS_00018887|organism=Clytia hemisphaerica|type=transcript|length=1109bp
ttttataaggctttttaaacACTGTACAGttgtaaaaatctaaaaatcta
cGTACAAATTTGGGATATAATTTATAACTAGAATGTATAAAAAagtctat
ttttcttttatgCATTGTCTCGACTGATTATGATTTGTACACATCGGTGC
AGGTATTATCAAAGGCATAGTCGACAATAGCTTAGCTCAAACTGAAGTAT
TCTTGAAGaatcatcaaaaatcaattaGTCTACATAAtatacagctccag
gcttttaggccttactcttggtctataggcactgctatatgCGGCCACta
gtttatttaatttttattatttaattttggcgagaatttattttggcgag
tgaccaaaatatttaattttgatgGGAACTAACTTTTGGCGAGttttgtc
taaattcgccaaattcaccaaaattagttcccgccaaaataagttccctt
aaggtaatcaaTTTTCAGAGCCTCCAAAGCTGAAAAAGTAATGTATAAAC
TAAATATAGAACAAATTACTTGTATCTATATCGGAATGATTGGTGTTTCC
ATCATCAGAAGAAATCGACACGTCAGTCAATTCATCTTCACTCGAGAATT
CATcagtttcaaaaaaactttctacATTCGTCATGATATCTTTTTCGTGC
TGTAATTCGGTTATTTTCTCTTTGGGTTCAGCGGGTTTCCAAATATCGTC
ATTGATATAGTTGATATCGACGTTCGGATTCAATACAAATGCGAAAAGTC
TTTCTAACTCTGCAATAAAGCTTTTGACATTAGAAACTCTTTCATGTAAA
ATGAACTGTATTCCAACAGTTTTTTCTACGGCAGTCTGATTGATTAATAT
GCTTAATTGTTGTTTCCAATTGCAGATTGTATCTTCCATCTCTTGTCTGA
TGATTAATACTTCTTCAATTGCCCTTTGTTTGCGAACATAAAATTGGACT
AGTGATTTAATCACAATGGTTGGAACGTTCGAACTTTgtctctgaaaata
aaaaaaataagacgactaaaagtcgaaaatttcgcataatacttgaacat
caaccattatgcattttgaatgaagcgttacacaaaatatacacaatgta
ttgtacaca Run BLAST on NCBI transcript from alignment at sc0000310:310522..313609+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018887 ID=TCONS_00018887|Name=TCONS_00018887|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at sc0000310:310522..313609+ (Clytia hemisphaerica)
ttttataaggctttttaaacACTGTACAGttgtaaaaatctaaaaatcta
cGTACAAATTTGGGATATAATTTATAACTAGAATGTATAAAAAagtctat
ttttcttttatgCATTGTCTCGACTGATTATGATTTGTACACATCGGTGC
AGGTATTATCAAAGGCATAGTCGACAATAGCTTAGCTCAAACTGAAGTAT
TCTTGAAGaatcatcaaaaatcaattaGTCTACATAATATACAGNCATTT
TCAAAGGCATAGTCGACAATAGCTTAGCTCAGACTGAAGTATTCTTGAAG
ACTCATCAAAGATCGATTAGTCTACATTAAtatacagctccaggctttta
ggccttactcttggtctataggcactgctatatgCGGCCACTAGTTTATT
Tagtttttattatttaattttggcgagaatttattttggcgagtgagcaa
aatatttaattttgatgGGAACTAACTTTTGGCGAGttttgtctaaattc
gccaaattcaccaaaattagttcccgccaaaataagttcccttaaggtaa
tcaaTTTTCAGAGCCTCCAAAGCTGAAAAAGTAATGTATAAACTAANCCC
TTAAGGTAatcggcaagtacaaaacgcctactacctactacttaatactt
actacctactacttactacttactacctactcagtttgtacgagtttgta
tactttacagaccatAACTCTCCTTCGCTTGTTCGAAAtctctattctaa
aaaaattggttttgtaatatctgaatgctaacacacaagtctttgcttta
tatttacttgaaaaaagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCcattatcttgattttttctt
tttcctaaacctactctctcttatgactcttattataagaactttccttT
TTCCTAAACATACTCCCTCTTATGACTCGTAATACACGCAATACACGTAA
ATGTCTAAAAAAGGCTCTGTAATATAAATAGGGGGTCAATCTATCTCTAT
CTTATTGTATGATCTGCATCATATCAAATggtgccaaaatatttcttgga
atggGTTTGCGAAGCTTTTAATATTCAATAattgtgtcaatatttttatc
aaaaatttcatttcgtcaATACTTTGACATGGTCAAATTGAcacctctaa
aacagctctttgTAGTATTTTCCTACTGAAAATGTCTACCTTGCGATACT
GAAAGCATCTTATTGagcaaaataagaatttttgctaCATAAAATGAAGT
CTACAAAGGTCATATTTTACGACCCTGTCAATAGTTTGGTtcaaaagggt
cattttgtcaataaatgtcaAAGACATGTCAAAGGATTTTCAAGTACCCA
GTGAAACATCTAGGGCTCtacttacatgttttttttataagcattacgct
tataagcatatgaaggctcagatttgcagatttcctaagcatatacgcta
gcctgaaatatttttcaagtagtcaatctctttctattcaaaaagatttg
caagtggtcaagtaaaaaaagacatttcacggctagccacattccactgc
tcaaaaatttaaatgctttttgaatcgaatattaacaaaattttaaagat
tttattaaaaaatttggttgggtgaatcaaaagcataataattcttaagc
aaataaaaaacatattctatgtctggatgctttgaaagcttaagcatact
cgagcctgaccaaggggcatacacttgcttataaaaaaaacatgtactta
aagtattttaactttttagattgatcgattcttataaataaaactgacaT
GAATAAGTAAGTGTGCGAAGGAAATATTTTCTCTTCTACGAAGAAGtgcg
tctgtaaactttatagaaaaagcgcgggaaaaagtcataaacaaaataaa
agagacaaaatattttgaagtcttcaaagtacgataaaagaagaagtttt
aacttttttaccaccaaagtttcagattttgctaattttaacatGCTGAA
TATTTNGTCTACATAAtatacagctccaggcttttaggccttactcttgg
tctataggcactgctatatgCGGCCACtagtttatttaatttttattatt
taattttggcgagaatttattttggcgagtgaccaaaatatttaattttg
atgGGAACTAACTTTTGGCGAGttttgtctaaattcgccaaattcaccaa
aattagttcccgccaaaataagttcccttaaggtaatcaaTTTTCAGAGC
CTCCAAAGCTGAAAAAGTAATGTATAAACTAAATATAGAACAAATTACTT
GTATCTATATCGGAATGATTGGTGTTTCCATCATCAGAAGAAATCGACAC
GTCAGTCAATTCATCTTCACTCGAGAATTCATcagtttcaaaaaaacttt
ctacATTCGTCATGATATCTTTTTCGTGCTGTAATTCGGTTATTTTCTCT
TTGGGTTCAGCGGGTTTCCAAATATCGTCATTGATATAGTTGATATCGAC
GTTCGGATTCAATACAAATGCGAAAAGTCTTTCTAACTCTGCAATAAAGC
TTTTGACATTAGAAACTCTTTCATGTAAAATGAACTGTATTCCAACAGTT
TTTTCTACGGCAGTCTGATTGATTAATATGCTTAATTGTTGTTTCCAATT
GCAGATTGTATCTTCCATCTCTTGTCTGATGATTAATACTTCTTCAATTG
CCCTTTGTTTGCGAACATAAAATTGGACTAGTGATTTAATCACAATGGTT
GGAACGTTCGAACTTTgtctctgaaaataaaaaaaataagacgactaaaa
gtcgaaaatttcgcataatacttgaacatcaaccattatgcattttgaat
gaagcgttacacaaaatatacacaatgtattgtacaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018887-exon-sc0000310-1491911889:310522..310754 | TCONS_00018887-exon-sc0000310-1491911889:310522..310754 | Clytia hemisphaerica | exon |
| TCONS_00018887-exon-sc0000310-1510915933:310522..310754 | TCONS_00018887-exon-sc0000310-1510915933:310522..310754 | Clytia hemisphaerica | exon |
| TCONS_00018887-exon-sc0000310-1575043694:310522..310754 | TCONS_00018887-exon-sc0000310-1575043694:310522..310754 | Clytia hemisphaerica | exon |
| TCONS_00018887-exon-sc0000310-1491911889:312734..313609 | TCONS_00018887-exon-sc0000310-1491911889:312734..313609 | Clytia hemisphaerica | exon |
| TCONS_00018887-exon-sc0000310-1510915933:312734..313609 | TCONS_00018887-exon-sc0000310-1510915933:312734..313609 | Clytia hemisphaerica | exon |
| TCONS_00018887-exon-sc0000310-1575043694:312734..313609 | TCONS_00018887-exon-sc0000310-1575043694:312734..313609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000310 | supercontig | sc0000310:310522..313609 + |
Blast
The following BLAST results are available for this feature:
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