TCONS_00018888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018888
Unique NameTCONS_00018888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1105

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018888 ID=TCONS_00018888|Name=TCONS_00018888|organism=Clytia hemisphaerica|type=transcript|length=1105bp
GTATTATcattcaaataagtttttcaTATTAttgtgtttttatattttta
ttttagatggATCTTCAATCGCTGAAAGACTTTCCAAACAGATTAATAAA
GTTTGCAAGGAAATCAAAAATCTATTGGCAAGTTACAATTCTATGAATCA
CAAAATGTATTCTAGATTCAAAAATGTGGATTACATTGAGGCTCTAAATG
TAAAATCATCGATGTATAACGCTGTCAACTTTGTTTTTCAGagacAAAGT
TCGAACGTTCCAACCATTGTGATTAAATCACTAGTCCAATTTTATGTTCG
CAAACAAAGGGCAATTGAAGAAGTATTAATCATCAGACAAGAGATGGAAG
ATACAATCTGCAATTGGAAACAACAATTAAGCATATTAATCAATCAGACT
GCCGTAGAAAAAACTGTTGGAATACAGTTCATTTTACATGAAAGAGTTTC
TAATGTCAAAAGCTTTATTGCAGAGTTAGAAAGACTTTTCGCATTTGTAT
TGAATCCGAACGTCGATATCAACTATATCAATGACGATATTTGGAAACCC
GCTGAACCCAAAGAGAAAATAACCGAATTACAGCACGAAAAAGATATCAT
GACGAATgtagaaagtttttttgaaactgATGAATTCTCGAGTGAAGATG
AATTGACTGACGTGTCGATTTCTTCTGATGATGGAAACACCAATCATTCC
GATATAGATACAAGTAATTTGTTCTATATTTAGTTTATACATTACTTTTT
CAGCTTTGGAGGCTCTGAAAAttgattaccttaagggaacttattttggc
gggaactaattttggtgaatttggcgaatttagacaaaaCTCGCCAAAAG
TTAGTTCCcatcaaaattaaatattttggtcactcgccaaaataaattct
cgccaaaattaaataataaaaattaaataaactaGTGGCCGcatatagca
gtgcctatagaccaagagtaaggcctaaaagcctggagctgtataTTATG
TAGACNAAATATTCAGCatgttaaaattagcaaaatctgaaactttggtg
gtaaaaaagttaaaacttcttcttttatcgtactttgaagacttcaaaat
atttt
Run BLAST on NCBI

protein sequence of TCONS_00018888-protein

>TCONS_00018888-protein ID=TCONS_00018888-protein|Name=TCONS_00018888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
YYHSNKFFILLCFYIFILDGSSIAERLSKQINKVCKEIKNLLASYNSMNH
KMYSRFKNVDYIEALNVKSSMYNAVNFVFQRQSSNVPTIVIKSLVQFYVR
KQRAIEEVLIIRQEMEDTICNWKQQLSILINQTAVEKTVGIQFILHERVS
NVKSFIAELERLFAFVLNPNVDINYINDDIWKPAEPKEKITELQHEKDIM
TNVESFFETDEFSSEDELTDVSISSDDGNTNHSDIDTSNLFYI
Run BLAST on NCBI

transcript from alignment at sc0000310:312628..316743-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018888 ID=TCONS_00018888|Name=TCONS_00018888|organism=Clytia hemisphaerica|type=transcript|length=4116bp|location=Sequence derived from alignment at sc0000310:312628..316743- (Clytia hemisphaerica)
GTATTATCATTCAAATAAGTTTTTCATATTATTGTGTTTTTATATTTTTA
TTTTAGATGGATCTTCAATCGCTGAAAGACTTTCCAAACAGATTAATAAA
GTTTGCAAGGAAATCAAAAATCTATTGGCAAGTTACAATTCTATGAATCA
CAAAATGTATTCTAGATTCAAAAATGTGGATTACATTGAGGCTCTAAATG
TAAAATCATCGATGTATAACGCTGTCAACTTTGTTTTTCAGGTAGCGAAT
GTTTTTTTCAGCTTCTTTTGGTGAACTTATTAAATAGGATATATCCGGGG
GCACTCAATCTGAAAACGACCATACATTCGACCAAAAATTTGACTTCCAA
AATCAGACCCTTACAGTGCATTCAAAAGTTGGTCGAAAATTGTCAAAAAC
AGGCTAAAGATTGATCCTTACAGTGCACTTTTTCAAATTTCAATTTAGTC
TAGACTTTGCTATGAGCTTAGGAGTCACATTTACCTGGGTACGTTAATTT
GGACATGAAATTAAACATAATATTTTTACATTTAGGTTTGGTCGATCACG
TATGGTAATATATCTTATATAAGTATCACTATAATATCAGTATTATTAAT
TTCGCTTAGCGAAAGTATTACGATAGCCTTTCTGCGGTGGCGGGGGAGAA
TATTTTTGGGGCGAAGATTATGGCGTGGGCGTTTGGCTGCGGGCGTACTA
CGGCAAATATTCTAAAGGTGGACTCACTCACAAAGATAAAAAGTGATAAA
ACAGGGCTTTTCTTAATAAATAAAATACGCTAGTGCAAGAAGTGTAACCA
AGCCTTTGTAAACATTCATCGTGAGAACTTTTAATGGCTGCTTGATTGCA
CATGCTTTTGAAAATTTTTATCATATTTTCTGGTCTTTTGTAGAGTGTTT
AAAGAGGTTTATATTTGTTTACTACATGTTACTACTAAGTATTTGATGTT
TGTGTAGTTAGTGAATGCACCAATAAATTGATCATGCTCAGTAAGTAGTA
CAAAAAGAGTTAATTTTCCACAACAAACAACAACATTATTAAAACCCTCT
CTTCTCTTCTTCACCAAAACTACAAACAGCACAGGTATGATATTTCTTTC
CTTTTTTCACCAGATAGTTATGTGTTAATAGTGAAACCAGTTGTGACAAA
CAGTCAGTTTTAGCAAGTACTGTGAAGTCGGGTAACTTGCATCAGTGGAG
GGTAACTTGCACAGCCATCAAATGACTGACTGAAATTCAGCAATCATTTT
TGTATAATCAAAACGAGCCTGCCTAGACACTGCCGTACATTGTCATTGTA
CGGTGATTTATGGTGGGTAAGGTGGGGTGTACAGATAATACAGTAGATTT
CAAATTAACCTATTTTCATCGCCGTACAAAAAGGACATTTAAATCCAGCC
CCACCTTACACCACCGCACAATGTACAGCGGTCCCTCGTTAATGATGACA
GTTTTTTATCCGATGAAGTTTGATTGGTGTTCGATGAGTTTGGTTAGTAA
AAGTTCCAGCTTTTCCTCCCCGATGGGATGATAGATATTGGCTCGCTCTT
TAAGCTTTAGCGTGGGCGTCTGCTAATAAGCCTTCGGAATGTAAAAAGAA
TGGGCAACAAGGTAATAAATCAAACTAAACGAGCTTCAATCAAACTTCGC
CGATCTTGATACACCTTTTGCTAATTAGGATTTTCATTTTGAACCATGGT
ACGTTGTTTGTATAAGATTTCCATTTCCGCACTAAGATTCTTGTTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATTAAGCATATGCTAAGCATACCTTGAGGAAATTTTA
GAATCATAATTTCCCAAACTTCAGAAAATAACAGAAGAATGAAGAAGAGA
ATTACAAACAAAATTCGAATAATTGGTGATTTTATTTTGTTTAATCTCTT
ACAAATAACACAACTTGGTCTCTTAAGAATGTACACTATCTAAACTTACA
TATTTTTTTACCAATCAAAAATTGAGATTTACTTAAGCATAGTGAGCTTC
AGCCGAAATTTACTGTATGCTTATAAAAAAATGAGTGTGCTCAACTGCTT
TTTGCCTTTAATGGGCTCTTCCAGAAAATTTCTGTACATGGGGGTGGAGG
ATATAGTGTCTGGAGGGGAGGGTAGTAAAAAATCTACAAAATTTGCCTTG
TCCTGGGGGAAGTAAACTTGCTCTCGATGGGATCAACTGATGATGCTTGT
CCGGGGCGGGGAGGGTTAGACCTGCTGTCCGGGCGATCAAAAGTCACAAT
GTCCGGGGGGGGGGGGGGTTTGCCCGGGGTCCGGGGCAATAAAAAGCCAA
ATAGCCGGGGGGGGGGGGGGGGGAAGGATAAAACATTTTTTGGAAATCCC
CCCCCCCCTGGACATTGAGTTTTTTGCATTTCCAGCATTCAGGTCAGTGC
CCCCCCCCCCCCGGGAAATTTGGCCTTTTGTTCCCCCGGCCGCCGGTCCC
CCCCCCCCCCCCCATATTCAAATTTTTTCTGGAAAAGTCCAATGATTTTG
ATGGTGGTGGGCCATCATTCATATCAGAAAGCGAAGATAGTATACAACAG
ATTTTTCTGACTAGCCATTTTTTTCAATTTTAGATAAATTCTACTGTTTA
TAAAAAGAAGTTGATATAAACTTTGCTCAAGTGAAAGAAGTCTTTATCAC
AAGTTCCTTCAAAGCACAAAATGAGGTTCCTGGCATCAAAGAATGAAAAG
TTCTTTTTTTTCTTCTTCTTTTTCAAAAAAATTTAAAATTATTTTTCTCA
AGTATATTGCAGTTCTCTTAAAGGAATCTTTTTTTTAATGGATTGAGATT
TTTCATTAAAAAAACAGCGGGTATCTATGACCTGTGTGTACAATACATTG
TGTATATTTTGTGTAACGCTTCATTCAAAATGCATAATGGTTGATGTTCA
AGTATTATGCGAAATTTTCGACTTTTAGTCGTCTTATTTTTTTTATTTTC
AGAGACAAAGTTCGAACGTTCCAACCATTGTGATTAAATCACTAGTCCAA
TTTTATGTTCGCAAACAAAGGGCAATTGAAGAAGTATTAATCATCAGACA
AGAGATGGAAGATACAATCTGCAATTGGAAACAACAATTAAGCATATTAA
TCAATCAGACTGCCGTAGAAAAAACTGTTGGAATACAGTTCATTTTACAT
GAAAGAGTTTCTAATGTCAAAAGCTTTATTGCAGAGTTAGAAAGACTTTT
CGCATTTGTATTGAATCCGAACGTCGATATCAACTATATCAATGACGATA
TTTGGAAACCCGCTGAACCCAAAGAGAAAATAACCGAATTACAGCACGAA
AAAGATATCATGACGAATGTAGAAAGTTTTTTTGAAACTGATGAATTCTC
GAGTGAAGATGAATTGACTGACGTGTCGATTTCTTCTGATGATGGAAACA
CCAATCATTCCGATATAGATACAAGTAATTTGTTCTATATTTAGTTTATA
CATTACTTTTTCAGCTTTGGAGGCTCTGAAAATTGATTACCTTAAGGGAA
CTTATTTTGGCGGGAACTAATTTTGGTGAATTTGGCGAATTTAGACAAAA
CTCGCCAAAAGTTAGTTCCCATCAAAATTAAATATTTTGGTCACTCGCCA
AAATAAATTCTCGCCAAAATTAAATAATAAAAATTAAATAAACTAGTGGC
CGCATATAGCAGTGCCTATAGACCAAGAGTAAGGCCTAAAAGCCTGGAGC
TGTATATTATGTAGACNAAATATTCAGCATGTTAAAATTAGCAAAATCTG
AAACTTTGGTGGTAAAAAAGTTAAAACTTCTTCTTTTATCGTACTTTGAA
GACTTCAAAATATTTT

Coding sequence (CDS) from alignment at sc0000310:312628..316743-

>TCONS_00018888 ID=TCONS_00018888|Name=TCONS_00018888|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at sc0000310:312628..316743- (Clytia hemisphaerica)
AGACAAAGTTCGAACGTTCCAACCATTGTGATTAAATCACTAGTCCAATT
TTATGTTCGCAAACAAAGGGCAATTGAAGAAGTATTAATCATCAGACAAG
AGATGGAAGATACAATCTGCAATTGGAAACAACAATTAAGCATATTAATC
AATCAGACTGCCGTAGAAAAAACTGTTGGAATACAGTTCATTTTACATGA
AAGAGTTTCTAATGTCAAAAGCTTTATTGCAGAGTTAGAAAGACTTTTCG
CATTTGTATTGAATCCGAACGTCGATATCAACTATATCAATGACGATATT
TGGAAACCCGCTGAACCCAAAGAGAAAATAACCGAATTACAGCACGAAAA
AGATATCATGACGAATGTAGAAAGTTTTTTTGAAACTGATGAATTCTCGA
GTGAAGATGAATTGACTGACGTGTCGATTTCTTCTGATGATGGAAACACC
AATCATTCCGATATAGATACAAGTAATTTGTTCTATATTTAGTATTATCA
TTCAAATAAGTTTTTCATATTATTGTGTTTTTATATTTTTATTTTAGATG
GATCTTCAATCGCTGAAAGACTTTCCAAACAGATTAATAAAGTTTGCAAG
GAAATCAAAAATCTATTGGCAAGTTACAATTCTATGAATCACAAAATGTA
TTCTAGATTCAAAAATGTGGATTACATTGAGGCTCTAAATGTAAAATCAT
CGATGTATAACGCTGTCAACTTTGTTTTTCAGAGACAAAGTTCGAACGTT
CCAACCATTGTGATTAAATCACTAGTCCAATTTTATGTTCGCAAACAAAG
GGCAATTGAAGAAGTATTAATCATCAGACAAGAGATGGAAGATACAATCT
GCAATTGGAAACAACAATTAAGCATATTAATCAATCAGACTGCCGTAGAA
AAAACTGTTGGAATACAGTTCATTTTACATGAAAGAGTTTCTAATGTCAA
AAGCTTTATTGCAGAGTTAGAAAGACTTTTCGCATTTGTATTGAATCCGA
ACGTCGATATCAACTATATCAATGACGATATTTGGAAACCCGCTGAACCC
AAAGAGAAAATAACCGAATTACAGCACGAAAAAGATATCATGACGAATGT
AGAAAGTTTTTTTGAAACTGATGAATTCTCGAGTGAAGATGAATTGACTG
ACGTGTCGATTTCTTCTGATGATGGAAACACCAATCATTCCGATATAGAT
ACAAGTAATTTGTTCTATATTTAGTATTATCATTCAAATAAGTTTTTCAT
ATTATTGTGTTTTTATATTTTTATTTTAGATGGATCTTCAATCGCTGAAA
GACTTTCCAAACAGATTAATAAAGTTTGCAAGGAAATCAAAAATCTATTG
GCAAGTTACAATTCTATGAATCACAAAATGTATTCTAGATTCAAAAATGT
GGATTACATTGAGGCTCTAAATGTAAAATCATCGATGTATAACGCTGTCA
ACTTTGTTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010581XLOC_010581Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018888-proteinTCONS_00018888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018888-exon-sc0000310-1575043694:316503..316743TCONS_00018888-exon-sc0000310-1575043694:316503..316743Clytia hemisphaericaexon
TCONS_00018888-exon-sc0000310-1575043694:312628..313491TCONS_00018888-exon-sc0000310-1575043694:312628..313491Clytia hemisphaericaexon
TCONS_00018888-exon-sc0000310-1510915933:316503..316743TCONS_00018888-exon-sc0000310-1510915933:316503..316743Clytia hemisphaericaexon
TCONS_00018888-exon-sc0000310-1510915933:312628..313491TCONS_00018888-exon-sc0000310-1510915933:312628..313491Clytia hemisphaericaexon
TCONS_00018888-exon-sc0000310-1491911889:316503..316743TCONS_00018888-exon-sc0000310-1491911889:316503..316743Clytia hemisphaericaexon
TCONS_00018888-exon-sc0000310-1491911889:312628..313491TCONS_00018888-exon-sc0000310-1491911889:312628..313491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000310supercontigsc0000310:312628..316743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125183	0.234531	0.18285	0.0834036	6.78221	7.34051	6.18136	8.82115	2.83876	3.85515	6.19626	4.29667	4.33261	3.26364	0.169611	0.141193	0	0.2673	0.129346	0.147572	0.265538	0.0874521	0.086423	0.489067	1.06262	5.39013	0.560108	0.568646	0.221385	0.495861
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top