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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018915 ID=TCONS_00018915|Name=TCONS_00018915|organism=Clytia hemisphaerica|type=transcript|length=548bp
attcttttcattgaaattccaaATAATAGTGAACGGACTTTACCTCAACA
ACAATGCGCTAAAGGTAAAGATTGGAATAGAACACGTCAGGATCCTACAG
CAGGCGCAATTATTACGAAGACGCGTTTTTCGATGGATGAAGTTTATTAT
GATTCAGTTTCCGTGAAAGTAAGACATTTGGGTTAGTGTTAAATATTTAC
AGAGCATCATCTCAAATACTGATAGTAGCGAATGCTGTAAAAAGGATTTT
CCGCCATTTCGTATTTTTACACAACAAAGAATTCCGACGCAGTGATGTTG
ATGTTGTTGACATAAGAAAACTGTGAAGGGAGCAAAGGGAGATTAATAAG
TATGCAAAGATCGATTGGAACGCCAACACTACTACCAACATAATTTCAAA
TTCCACACCCAAAGTGAaagattattatttttgttatattatatttttgt
gTCAAATAATAAAACCCATGTTAACTCTAACagtgaaaaaaagattgaag
aaaaatgaagaaacgaAATGTTTTTCTAACCCCCTCTTgctaaaaatc Run BLAST on NCBI transcript from alignment at sc0000313:122542..124807+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018915 ID=TCONS_00018915|Name=TCONS_00018915|organism=Clytia hemisphaerica|type=transcript|length=2266bp|location=Sequence derived from alignment at sc0000313:122542..124807+ (Clytia hemisphaerica)
attcttttcattgaaattccaaATAATAGTGAACGGACTTTACCTCAACA
ACAATGCGCTAAAGGTAAAGATTGGAATAGAACACGTCAGGATCCTACAG
CAGGCGCAATTATTACGAAGACGCGTTTTTCGATGGATGAAGTTTATTAT
GATTCAGTTTCCGTGAAAGTAAGACATTTGGGTTAGTGTTAAATATTTAC
AGAGCATCATCTCAAATACTGATAGTAGCGAATGCTGTAAAAAGGATTTT
CCGCCATTTCGTATTTTTACACAACAAAGAATTCCGACGCAGTGATGTTG
ATGTTGTTGACATAAGAAAACTGTGAAGGGAGCAAAGGGAGATTAATAAG
TATGCAAAGGTAAGTGGATTGAGATTAACGAGGGGGTCTTAATTAAATGG
AAGCACATTTTTAATTACAGTGTTGTCAATCGGTATCAATTTTTAATGAT
AATACACGTTCATATTATGAAGTATAGGTATacacaatgaagtataagcc
cgaagggctagaatcgaatctccttggtaggatttgaagccaacaaatcc
taccgaAGTTGTGCGGcattgagcggctcgcctggtttttacacaaatga
aagatttataaaatttaccgctaaacttcgaaaaaaatatcaatcgtaaa
caaaggaattgctagattcaatctatcggcaaaaatacggcgcatttttt
taggcttcactttttcttgcctgagaaaggttagagattctactctagcc
ctttgggctttaaactcaatgggtatACAGCGATGAAGGAAAAGAACact
ctttttttaagaaacagtagatttttatttttgttgttcttATACTTTTG
AGCCCTAGATTGTTCTTAAACTGTAATTAATATGGGAAAATTCACCCCTG
GCTTGACACTCTATTTTTACTATTATAATTTGCCTTGTTTTTTAATTTAG
TCAATGTATGAGAGAGATCTAGAAGATGTTTTGctgttttgctgacgtca
gcagatgAATATTGTTTCAGTATTTTTCAgataaataatgaaatatttat
GTAGGATATAGTTTGGACTCATTTACTTCTGGTAAAGACAGTGAATGAGG
ATACCCGCTAAAGTCTCCTAAAGTCTTTCTTTGTCCTATAATTCTTGgat
agagtagaatctctaacctttctcaggcaagaaaaagtgaagccttaaaa
aatgcgccgtatttttgacgacggattgaatctagcaattcctttgttta
tgattgatatttttttcgaaatttagcggtaaattttagtttcaatttgt
catttgtgtaaaaaccaggcgagccgctcaaggccgcgcaactttggtac
gatttgttggcttcaaatcctaccaaggagattcgattctagcccacaga
tatctaagcccgaagggctagatttgcaactttaagctttctccagcaaa
aaaaagtgaagctaaaatttgacttcttaaattttgtaccggtggatagg
atctagcattttaattgttttcggagcgcgagatctaaaaaagtaggcgg
caaacgctatttcacatctctcaaaccggtgaaattgcatatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcaaatctagcccttcgggctttacagatatctgtgttcTAGCccttt
cgggcttatacttcattggtaaAGAATTAGATCATAACTGGGGAGGGAAA
TAATTTAAGAATTTaggatttttaaaaagaacattTGAATATCTAAAGCC
TGGAAATTCATAAAATTAAGCTTTAAGGTATCTTGGACTCAGGGCTCAAA
AACACACAGATCACTAAGCCTAAGGCAGAAAAAAACGTCAGGGTttacct
tttttgaagtttctcctTCTTGTTTAGATCGATTGGAACGCCAACACTAC
TACCAACATAATTTCAAATTCCACACCCAAAGTGAaagattattattttt
gttatattatatttttgtgTCAAATAATAAAACCCATGTTAACTCTAACa
gtgaaaaaaagattgaagaaaaatgaagaaacgaAATGTTTTTCTAACCC
CCTCTTgctaaaaatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018915-exon-sc0000313-1491911889:122542..122900 | TCONS_00018915-exon-sc0000313-1491911889:122542..122900 | Clytia hemisphaerica | exon |
| TCONS_00018915-exon-sc0000313-1510915933:122542..122900 | TCONS_00018915-exon-sc0000313-1510915933:122542..122900 | Clytia hemisphaerica | exon |
| TCONS_00018915-exon-sc0000313-1575043694:122542..122900 | TCONS_00018915-exon-sc0000313-1575043694:122542..122900 | Clytia hemisphaerica | exon |
| TCONS_00018915-exon-sc0000313-1491911889:124619..124807 | TCONS_00018915-exon-sc0000313-1491911889:124619..124807 | Clytia hemisphaerica | exon |
| TCONS_00018915-exon-sc0000313-1510915933:124619..124807 | TCONS_00018915-exon-sc0000313-1510915933:124619..124807 | Clytia hemisphaerica | exon |
| TCONS_00018915-exon-sc0000313-1575043694:124619..124807 | TCONS_00018915-exon-sc0000313-1575043694:124619..124807 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000313 | supercontig | sc0000313:122542..124807 + |
Blast
The following BLAST results are available for this feature:
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